Wall clock time and date at job start Tue Mar 31 2020 19:49:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47130 * 2 1 4 4 C 1.50702 * 109.46923 * 120.00180 * 2 1 3 5 5 N 1.31079 * 126.65889 * 300.04199 * 4 2 1 6 6 N 1.28844 * 107.98960 * 179.97438 * 5 4 2 7 7 N 1.28743 * 109.39606 * 359.72960 * 6 5 4 8 8 N 1.29019 * 108.80802 * 0.44432 * 7 6 5 9 9 C 1.46503 * 126.43669 * 179.83615 * 8 7 6 10 10 C 1.50696 * 109.46798 * 269.68384 * 9 8 7 11 11 O 1.21287 * 120.00434 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99885 * 179.97438 * 10 9 8 13 13 C 1.46506 * 120.00033 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47289 * 275.00400 * 13 12 10 15 15 C 1.53002 * 109.46817 * 299.99814 * 14 13 12 16 16 C 1.52997 * 109.47415 * 300.00127 * 15 14 13 17 17 N 1.46497 * 109.47389 * 180.02562 * 16 15 14 18 18 C 1.36931 * 120.00271 * 84.99766 * 17 16 15 19 19 H 1.07997 * 120.00381 * 0.02562 * 18 17 16 20 20 C 1.38815 * 120.00074 * 180.02562 * 18 17 16 21 21 N 1.31615 * 119.99908 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00028 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47368 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47381 * 119.99773 * 22 20 18 25 25 H 1.48504 * 109.47105 * 239.99659 * 22 20 18 26 26 C 1.52997 * 109.47232 * 60.00127 * 16 15 14 27 27 C 1.53002 * 109.47143 * 300.00043 * 26 16 15 28 28 H 1.09006 * 109.47501 * 300.00023 * 1 2 3 29 29 H 1.09004 * 109.47313 * 60.00021 * 1 2 3 30 30 H 1.09001 * 109.47467 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47064 * 239.99726 * 2 1 3 32 32 H 1.09002 * 109.46544 * 180.02562 * 3 2 1 33 33 H 1.08991 * 109.47340 * 299.99653 * 3 2 1 34 34 H 1.08997 * 109.47060 * 60.00269 * 3 2 1 35 35 H 1.09001 * 109.47356 * 149.68387 * 9 8 7 36 36 H 1.08997 * 109.47116 * 29.68442 * 9 8 7 37 37 H 0.97000 * 120.00155 * 0.02562 * 12 10 9 38 38 H 1.09001 * 109.47060 * 35.00669 * 13 12 10 39 39 H 1.08996 * 109.46952 * 59.99873 * 14 13 12 40 40 H 1.09002 * 109.47153 * 180.02562 * 14 13 12 41 41 H 1.09000 * 109.46986 * 180.02562 * 15 14 13 42 42 H 1.09002 * 109.47070 * 60.00180 * 15 14 13 43 43 H 1.09002 * 109.47045 * 300.00068 * 16 15 14 44 44 H 0.97004 * 119.99924 * 265.00034 * 17 16 15 45 45 H 0.97001 * 120.00168 * 179.97438 * 21 20 18 46 46 H 1.09004 * 109.47261 * 180.02562 * 26 16 15 47 47 H 1.09002 * 109.47153 * 60.00008 * 26 16 15 48 48 H 1.09002 * 109.47067 * 300.00018 * 27 26 16 49 49 H 1.08992 * 109.47461 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.7968 -0.3789 2.4766 6 7 2.3979 -1.2294 3.2351 7 7 3.0060 -2.0983 2.5052 8 7 2.8093 -1.8090 1.2633 9 6 3.3287 -2.5423 0.1063 10 6 4.6668 -1.9733 -0.2896 11 8 5.1398 -1.0462 0.3331 12 7 5.3379 -2.4946 -1.3357 13 6 6.6385 -1.9411 -1.7209 14 6 6.4281 -0.7387 -2.6433 15 6 5.6718 -1.1838 -3.8967 16 6 6.4842 -2.2531 -4.6298 17 7 5.7603 -2.6787 -5.8302 18 6 5.8888 -1.9698 -6.9947 19 1 6.5241 -1.0971 -7.0284 20 6 5.2025 -2.3729 -8.1320 21 7 4.4286 -3.4368 -8.0912 22 14 5.3783 -1.4063 -9.7208 23 1 6.2998 -0.2620 -9.5046 24 1 5.9266 -2.2906 -10.7802 25 1 4.0478 -0.8973 -10.1404 26 6 6.6946 -3.4554 -3.7074 27 6 7.4509 -3.0105 -2.4540 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4423 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 2.6324 -2.4468 -0.7269 36 1 3.4436 -3.5949 0.3649 37 1 4.9595 -3.2359 -1.8339 38 1 7.1774 -1.6241 -0.8280 39 1 5.8494 0.0230 -2.1210 40 1 7.3958 -0.3272 -2.9303 41 1 5.5223 -0.3273 -4.5541 42 1 4.7041 -1.5956 -3.6101 43 1 7.4519 -1.8412 -4.9164 44 1 5.1900 -3.4628 -5.8002 45 1 3.9487 -3.7182 -8.8858 46 1 7.2738 -4.2171 -4.2296 47 1 5.7269 -3.8672 -3.4208 48 1 8.4186 -2.5987 -2.7406 49 1 7.6004 -3.8669 -1.7967 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026573840.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:52 Heat of formation + Delta-G solvation = 74.709335 kcal Electronic energy + Delta-G solvation = -30036.171627 eV Core-core repulsion = 26035.657467 eV Total energy + Delta-G solvation = -4000.514160 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.36560 -40.49180 -38.33071 -36.43917 -35.59166 -34.86822 -33.06337 -31.69544 -31.02592 -30.62091 -29.33479 -27.57494 -27.52937 -24.63914 -24.00671 -23.54180 -22.41721 -21.74883 -21.06353 -20.78844 -19.14329 -18.36266 -17.94266 -17.17234 -16.58265 -16.21830 -15.76849 -15.45619 -15.37310 -14.89076 -14.52461 -14.31244 -13.90320 -13.70155 -13.58058 -13.53817 -13.33065 -12.96096 -12.54076 -12.51676 -12.45434 -12.32120 -12.05272 -11.97943 -11.80087 -11.67234 -11.54298 -11.50849 -11.14469 -11.13395 -10.98539 -10.97426 -10.56613 -10.34579 -10.28007 -10.22414 -10.07183 -9.87386 -9.69968 -9.24266 -8.96752 -7.06374 -5.87199 -3.15817 0.99203 1.56590 2.09506 2.11814 2.79840 3.35647 3.42325 3.43849 3.60591 3.84788 4.12234 4.17871 4.36344 4.48798 4.62833 4.73655 4.75787 4.87251 4.89873 4.95528 5.21780 5.32467 5.34809 5.39406 5.41806 5.49604 5.52006 5.54129 5.56842 5.58599 5.69117 5.73075 5.81685 5.84680 5.88808 5.90432 5.95835 6.10641 6.18646 6.24491 6.34843 6.45112 6.57312 6.83081 6.97032 7.11062 7.61704 7.76144 8.31660 8.45702 9.43206 9.99982 10.34128 11.35431 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013955 B = 0.002806 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.987553 B = 9976.200539 C =11102.330686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.012 4.012 3 C -0.143 4.143 4 C 0.206 3.794 5 N -0.301 5.301 6 N -0.075 5.075 7 N -0.088 5.088 8 N -0.294 5.294 9 C 0.089 3.911 10 C 0.501 3.499 11 O -0.523 6.523 12 N -0.705 5.705 13 C 0.149 3.851 14 C -0.129 4.129 15 C -0.131 4.131 16 C 0.177 3.823 17 N -0.725 5.725 18 C -0.238 4.238 19 H 0.070 0.930 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.904 3.096 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.292 1.292 26 C -0.125 4.125 27 C -0.123 4.123 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.405 0.595 38 H 0.085 0.915 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.047 0.953 44 H 0.382 0.618 45 H 0.254 0.746 46 H 0.068 0.932 47 H 0.055 0.945 48 H 0.080 0.920 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.182 1.490 15.015 15.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.034 4.034 3 C -0.202 4.202 4 C -0.072 4.072 5 N -0.150 5.150 6 N -0.068 5.068 7 N -0.073 5.073 8 N -0.094 5.094 9 C -0.037 4.037 10 C 0.284 3.716 11 O -0.399 6.399 12 N -0.358 5.358 13 C 0.046 3.954 14 C -0.168 4.168 15 C -0.172 4.172 16 C 0.067 3.933 17 N -0.365 5.365 18 C -0.369 4.369 19 H 0.088 0.912 20 C -0.209 4.209 21 N -0.582 5.582 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C -0.163 4.163 27 C -0.161 4.161 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.159 0.841 36 H 0.161 0.839 37 H 0.242 0.758 38 H 0.103 0.897 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.216 0.784 45 H 0.064 0.936 46 H 0.087 0.913 47 H 0.073 0.927 48 H 0.099 0.901 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.650 2.094 16.744 17.081 hybrid contribution -0.245 -0.256 -2.226 2.254 sum -2.895 1.837 14.518 14.917 Atomic orbital electron populations 1.21855 0.91855 1.02732 1.03766 1.19825 0.97407 0.96671 0.89519 1.21821 1.01934 0.92981 1.03426 1.26119 0.94509 0.88586 0.97993 1.74955 1.20677 1.20991 0.98354 1.78591 1.06919 0.98871 1.22449 1.78869 1.19305 1.21926 0.87235 1.47835 1.33897 1.20878 1.06792 1.22037 0.96441 0.98732 0.86508 1.20213 0.86171 0.84017 0.81229 1.90812 1.68140 1.27960 1.52944 1.46021 1.21693 1.37011 1.31123 1.21074 0.82356 0.94263 0.97737 1.21939 1.01581 0.96593 0.96705 1.22226 0.99093 1.00853 0.95024 1.20226 0.94683 0.91598 0.86796 1.42416 1.54800 1.33317 1.05995 1.19269 1.22555 1.07146 0.87932 0.91189 1.24725 0.99927 0.98167 0.98079 1.69654 1.33600 1.26134 1.28771 0.86160 0.77249 0.79109 0.83930 1.20555 1.21860 1.21872 1.21828 0.99644 0.99516 0.95351 1.21815 0.99339 0.97925 0.97052 0.91001 0.90581 0.92360 0.88955 0.91912 0.90721 0.91142 0.84111 0.83906 0.75823 0.89734 0.92318 0.91123 0.91982 0.92956 0.93481 0.78425 0.93562 0.91281 0.92682 0.90097 0.91621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.17 37.16 0.34 -0.65 16 2 C -0.01 -0.11 3.26 -91.77 -0.30 -0.40 16 3 C -0.14 -1.26 9.18 37.16 0.34 -0.92 16 4 C 0.21 2.38 6.64 -155.42 -1.03 1.35 16 5 N -0.30 -4.29 12.36 32.70 0.40 -3.88 16 6 N -0.07 -1.16 13.43 60.35 0.81 -0.35 16 7 N -0.09 -1.24 13.29 60.35 0.80 -0.44 16 8 N -0.29 -3.32 2.83 -59.44 -0.17 -3.49 16 9 C 0.09 0.65 6.57 -5.19 -0.03 0.62 16 10 C 0.50 5.16 7.86 -10.99 -0.09 5.07 16 11 O -0.52 -7.73 16.09 5.55 0.09 -7.64 16 12 N -0.71 -6.40 4.23 -53.80 -0.23 -6.63 16 13 C 0.15 1.59 2.78 -67.93 -0.19 1.40 16 14 C -0.13 -1.60 5.60 -26.73 -0.15 -1.74 16 15 C -0.13 -1.97 5.34 -26.73 -0.14 -2.12 16 16 C 0.18 2.97 2.77 -67.93 -0.19 2.78 16 17 N -0.73 -16.23 5.12 -53.43 -0.27 -16.50 16 18 C -0.24 -6.14 9.93 -15.06 -0.15 -6.29 16 19 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 20 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 21 N -0.93 -26.56 13.06 55.49 0.72 -25.83 16 22 Si 0.90 21.38 29.55 -169.99 -5.02 16.35 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 C -0.12 -1.59 5.22 -26.73 -0.14 -1.73 16 27 C -0.12 -1.23 5.61 -26.73 -0.15 -1.38 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.09 0.64 6.85 -51.93 -0.36 0.28 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.14 0.57 7.13 -51.93 -0.37 0.20 16 36 H 0.14 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.41 2.93 6.87 -40.82 -0.28 2.65 16 38 H 0.08 0.98 7.58 -51.93 -0.39 0.58 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 42 H 0.05 0.77 7.60 -51.93 -0.39 0.37 16 43 H 0.05 0.84 8.08 -51.93 -0.42 0.43 16 44 H 0.38 9.08 7.80 -40.82 -0.32 8.76 16 45 H 0.25 7.05 8.31 -40.82 -0.34 6.72 16 46 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.05 0.64 6.51 -51.93 -0.34 0.30 16 48 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 49 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 397.12 15.07 5.98 5.98 Total: -1.00 -34.29 397.12 -6.76 -41.05 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: -7.91 Total: 5.85 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -1.97 Total: -4.47 kcal Atomic # 7 Polarization: -59.20 SS G_CDS: 2.07 Total: -57.13 kcal Atomic # 8 Polarization: -7.73 SS G_CDS: 0.09 Total: -7.64 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.29 -6.76 -41.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026573840.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.762 kcal (2) G-P(sol) polarization free energy of solvation -34.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds