Wall clock time and date at job start Tue Mar 31 2020 19:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47130 * 2 1 4 4 C 1.50702 * 109.46923 * 120.00180 * 2 1 3 5 5 N 1.31079 * 126.65889 * 300.04199 * 4 2 1 6 6 N 1.28844 * 107.98960 * 179.97438 * 5 4 2 7 7 N 1.28743 * 109.39606 * 359.72960 * 6 5 4 8 8 N 1.29019 * 108.80802 * 0.44432 * 7 6 5 9 9 C 1.46503 * 126.43669 * 179.83615 * 8 7 6 10 10 C 1.50696 * 109.46798 * 269.68384 * 9 8 7 11 11 O 1.21287 * 120.00434 * 359.97438 * 10 9 8 12 12 N 1.34777 * 119.99885 * 179.97438 * 10 9 8 13 13 C 1.46506 * 120.00033 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47289 * 275.00400 * 13 12 10 15 15 C 1.53002 * 109.46817 * 299.99814 * 14 13 12 16 16 C 1.52997 * 109.47415 * 300.00127 * 15 14 13 17 17 N 1.46497 * 109.47389 * 180.02562 * 16 15 14 18 18 C 1.36931 * 120.00271 * 84.99766 * 17 16 15 19 19 H 1.07997 * 120.00381 * 0.02562 * 18 17 16 20 20 C 1.38815 * 120.00074 * 180.02562 * 18 17 16 21 21 N 1.31615 * 119.99908 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00028 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47368 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47381 * 119.99773 * 22 20 18 25 25 H 1.48504 * 109.47105 * 239.99659 * 22 20 18 26 26 C 1.52997 * 109.47232 * 60.00127 * 16 15 14 27 27 C 1.53002 * 109.47143 * 300.00043 * 26 16 15 28 28 H 1.09006 * 109.47501 * 300.00023 * 1 2 3 29 29 H 1.09004 * 109.47313 * 60.00021 * 1 2 3 30 30 H 1.09001 * 109.47467 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47064 * 239.99726 * 2 1 3 32 32 H 1.09002 * 109.46544 * 180.02562 * 3 2 1 33 33 H 1.08991 * 109.47340 * 299.99653 * 3 2 1 34 34 H 1.08997 * 109.47060 * 60.00269 * 3 2 1 35 35 H 1.09001 * 109.47356 * 149.68387 * 9 8 7 36 36 H 1.08997 * 109.47116 * 29.68442 * 9 8 7 37 37 H 0.97000 * 120.00155 * 0.02562 * 12 10 9 38 38 H 1.09001 * 109.47060 * 35.00669 * 13 12 10 39 39 H 1.08996 * 109.46952 * 59.99873 * 14 13 12 40 40 H 1.09002 * 109.47153 * 180.02562 * 14 13 12 41 41 H 1.09000 * 109.46986 * 180.02562 * 15 14 13 42 42 H 1.09002 * 109.47070 * 60.00180 * 15 14 13 43 43 H 1.09002 * 109.47045 * 300.00068 * 16 15 14 44 44 H 0.97004 * 119.99924 * 265.00034 * 17 16 15 45 45 H 0.97001 * 120.00168 * 179.97438 * 21 20 18 46 46 H 1.09004 * 109.47261 * 180.02562 * 26 16 15 47 47 H 1.09002 * 109.47153 * 60.00008 * 26 16 15 48 48 H 1.09002 * 109.47067 * 300.00018 * 27 26 16 49 49 H 1.08992 * 109.47461 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2305 5 7 1.7968 -0.3789 2.4766 6 7 2.3979 -1.2294 3.2351 7 7 3.0060 -2.0983 2.5052 8 7 2.8093 -1.8090 1.2633 9 6 3.3287 -2.5423 0.1063 10 6 4.6668 -1.9733 -0.2896 11 8 5.1398 -1.0462 0.3331 12 7 5.3379 -2.4946 -1.3357 13 6 6.6385 -1.9411 -1.7209 14 6 6.4281 -0.7387 -2.6433 15 6 5.6718 -1.1838 -3.8967 16 6 6.4842 -2.2531 -4.6298 17 7 5.7603 -2.6787 -5.8302 18 6 5.8888 -1.9698 -6.9947 19 1 6.5241 -1.0971 -7.0284 20 6 5.2025 -2.3729 -8.1320 21 7 4.4286 -3.4368 -8.0912 22 14 5.3783 -1.4063 -9.7208 23 1 6.2998 -0.2620 -9.5046 24 1 5.9266 -2.2906 -10.7802 25 1 4.0478 -0.8973 -10.1404 26 6 6.6946 -3.4554 -3.7074 27 6 7.4509 -3.0105 -2.4540 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1300 1.4423 -0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 2.6324 -2.4468 -0.7269 36 1 3.4436 -3.5949 0.3649 37 1 4.9595 -3.2359 -1.8339 38 1 7.1774 -1.6241 -0.8280 39 1 5.8494 0.0230 -2.1210 40 1 7.3958 -0.3272 -2.9303 41 1 5.5223 -0.3273 -4.5541 42 1 4.7041 -1.5956 -3.6101 43 1 7.4519 -1.8412 -4.9164 44 1 5.1900 -3.4628 -5.8002 45 1 3.9487 -3.7182 -8.8858 46 1 7.2738 -4.2171 -4.2296 47 1 5.7269 -3.8672 -3.4208 48 1 8.4186 -2.5987 -2.7406 49 1 7.6004 -3.8669 -1.7967 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026573840.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:51 Heat of formation + Delta-G solvation = 50.985049 kcal Electronic energy + Delta-G solvation = -30037.200389 eV Core-core repulsion = 26035.657467 eV Total energy + Delta-G solvation = -4001.542922 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -45.30437 -41.39183 -39.40651 -37.18665 -36.54051 -36.21348 -34.42054 -32.74272 -32.39443 -31.68153 -30.33930 -28.84809 -28.14453 -25.64921 -25.49628 -24.62577 -23.48255 -22.67604 -22.23295 -21.56713 -20.24818 -19.24836 -19.04237 -18.67440 -17.50633 -16.99713 -16.93270 -16.57603 -16.32828 -15.96265 -15.59511 -15.34987 -15.18413 -15.00047 -14.69984 -14.42610 -14.22825 -13.88640 -13.77465 -13.61542 -13.20944 -13.12288 -13.08905 -13.07284 -12.83713 -12.81618 -12.69746 -12.49307 -12.32994 -12.30282 -12.09997 -12.00187 -11.99555 -11.91940 -11.69380 -11.30099 -11.22442 -11.09025 -10.95894 -10.80719 -10.13099 -8.93388 -7.91339 -5.17081 0.08500 0.81646 1.11724 1.33066 1.48052 1.50152 1.58019 2.03516 2.58474 2.85428 3.13584 3.41564 3.43019 3.58786 3.75766 3.87431 3.88467 3.92573 3.98875 4.03219 4.17991 4.31836 4.34716 4.36611 4.40761 4.62306 4.62622 4.67845 4.69540 4.74970 4.80598 4.82527 4.87171 4.92608 5.05571 5.09004 5.12842 5.17832 5.24745 5.28725 5.31832 5.32138 5.46341 5.55317 5.61651 5.69956 6.32817 6.35822 7.01646 7.39651 7.47378 8.17917 8.39919 9.31861 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013955 B = 0.002806 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.987553 B = 9976.200539 C =11102.330686 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.013 4.013 3 C -0.141 4.141 4 C 0.210 3.790 5 N -0.328 5.328 6 N -0.107 5.107 7 N -0.101 5.101 8 N -0.289 5.289 9 C 0.082 3.918 10 C 0.504 3.496 11 O -0.572 6.572 12 N -0.694 5.694 13 C 0.155 3.845 14 C -0.119 4.119 15 C -0.118 4.118 16 C 0.171 3.829 17 N -0.735 5.735 18 C -0.231 4.231 19 H 0.069 0.931 20 C -0.072 4.072 21 N -0.965 5.965 22 Si 0.960 3.040 23 H -0.271 1.271 24 H -0.297 1.297 25 H -0.295 1.295 26 C -0.116 4.116 27 C -0.111 4.111 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.064 0.936 31 H 0.115 0.885 32 H 0.040 0.960 33 H 0.095 0.905 34 H 0.060 0.940 35 H 0.182 0.818 36 H 0.177 0.823 37 H 0.418 0.582 38 H 0.081 0.919 39 H 0.051 0.949 40 H 0.073 0.927 41 H 0.032 0.968 42 H 0.059 0.941 43 H 0.033 0.967 44 H 0.375 0.625 45 H 0.249 0.751 46 H 0.060 0.940 47 H 0.071 0.929 48 H 0.084 0.916 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.265 0.865 14.803 15.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.034 4.034 3 C -0.199 4.199 4 C -0.068 4.068 5 N -0.176 5.176 6 N -0.100 5.100 7 N -0.087 5.087 8 N -0.090 5.090 9 C -0.042 4.042 10 C 0.288 3.712 11 O -0.451 6.451 12 N -0.348 5.348 13 C 0.051 3.949 14 C -0.159 4.159 15 C -0.158 4.158 16 C 0.063 3.937 17 N -0.374 5.374 18 C -0.363 4.363 19 H 0.087 0.913 20 C -0.264 4.264 21 N -0.617 5.617 22 Si 0.790 3.210 23 H -0.195 1.195 24 H -0.224 1.224 25 H -0.223 1.223 26 C -0.154 4.154 27 C -0.149 4.149 28 H 0.078 0.922 29 H 0.113 0.887 30 H 0.083 0.917 31 H 0.133 0.867 32 H 0.059 0.941 33 H 0.114 0.886 34 H 0.079 0.921 35 H 0.199 0.801 36 H 0.194 0.806 37 H 0.256 0.744 38 H 0.099 0.901 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.051 0.949 42 H 0.078 0.922 43 H 0.052 0.948 44 H 0.207 0.793 45 H 0.058 0.942 46 H 0.079 0.921 47 H 0.090 0.910 48 H 0.103 0.897 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.705 1.463 16.545 16.829 hybrid contribution -0.144 -0.024 -2.165 2.170 sum -2.849 1.440 14.381 14.731 Atomic orbital electron populations 1.21848 0.90494 1.03325 1.04130 1.20070 0.98431 0.96102 0.88824 1.21801 1.00458 0.93618 1.04036 1.26662 0.93701 0.88358 0.98122 1.74871 1.21574 1.21543 0.99654 1.78551 1.08120 0.99772 1.23579 1.78761 1.19407 1.22069 0.88456 1.48071 1.33284 1.20866 1.06807 1.22535 0.95459 0.99725 0.86469 1.20629 0.86824 0.83142 0.80597 1.90810 1.69508 1.30217 1.54517 1.45904 1.21076 1.36962 1.30830 1.20929 0.83188 0.93738 0.97083 1.21831 1.01136 0.97331 0.95571 1.21989 0.99466 0.98976 0.95371 1.20470 0.93482 0.93797 0.85957 1.42595 1.55184 1.32804 1.06864 1.19564 1.21017 1.06648 0.89105 0.91322 1.25374 1.00759 0.99468 1.00847 1.69772 1.35073 1.27741 1.29067 0.85267 0.76938 0.78102 0.80652 1.19516 1.22399 1.22258 1.21704 1.00916 0.97307 0.95462 1.21740 0.98818 0.98526 0.95819 0.92194 0.88662 0.91665 0.86729 0.94085 0.88609 0.92073 0.80115 0.80566 0.74353 0.90063 0.93004 0.90876 0.94949 0.92249 0.94840 0.79332 0.94188 0.92118 0.91030 0.89704 0.89088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.17 71.98 0.66 -0.96 16 2 C -0.01 -0.19 3.26 -11.54 -0.04 -0.23 16 3 C -0.14 -2.33 9.18 71.98 0.66 -1.67 16 4 C 0.21 4.61 6.64 138.13 0.92 5.53 16 5 N -0.33 -9.36 12.36 -50.45 -0.62 -9.98 16 6 N -0.11 -3.34 13.43 37.01 0.50 -2.84 16 7 N -0.10 -2.78 13.29 37.02 0.49 -2.29 16 8 N -0.29 -6.05 2.83 -341.97 -0.97 -7.02 16 9 C 0.08 0.92 6.57 85.63 0.56 1.49 16 10 C 0.50 9.05 7.86 87.66 0.69 9.74 16 11 O -0.57 -16.19 16.09 -3.05 -0.05 -16.24 16 12 N -0.69 -10.35 4.23 -442.51 -1.87 -12.22 16 13 C 0.15 2.88 2.78 44.99 0.13 3.01 16 14 C -0.12 -2.75 5.60 30.59 0.17 -2.58 16 15 C -0.12 -3.37 5.34 30.59 0.16 -3.21 16 16 C 0.17 5.51 2.77 44.99 0.12 5.63 16 17 N -0.73 -32.41 5.12 -322.96 -1.65 -34.07 16 18 C -0.23 -11.85 9.93 84.04 0.83 -11.02 16 19 H 0.07 3.47 7.83 -2.91 -0.02 3.45 16 20 C -0.07 -3.88 5.50 84.86 0.47 -3.42 16 21 N -0.97 -55.12 13.06 21.65 0.28 -54.83 16 22 Si 0.96 43.94 29.55 68.60 2.03 45.97 16 23 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 24 H -0.30 -13.70 7.11 99.48 0.71 -13.00 16 25 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 26 C -0.12 -2.65 5.22 30.59 0.16 -2.49 16 27 C -0.11 -1.86 5.61 30.60 0.17 -1.68 16 28 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 29 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.11 1.18 6.85 -2.39 -0.02 1.16 16 32 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.18 0.58 7.13 -2.39 -0.02 0.56 16 36 H 0.18 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.42 4.29 6.87 -92.71 -0.64 3.65 16 38 H 0.08 1.68 7.58 -2.39 -0.02 1.67 16 39 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.06 1.60 7.60 -2.39 -0.02 1.59 16 43 H 0.03 1.17 8.08 -2.39 -0.02 1.15 16 44 H 0.37 17.56 7.80 -92.71 -0.72 16.84 16 45 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 46 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 47 H 0.07 1.41 6.51 -2.39 -0.02 1.39 16 48 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 49 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -76.90 397.12 3.41 -73.49 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: -0.39 Total: 21.89 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: 5.67 Total: -1.86 kcal Atomic # 7 Polarization: -119.41 SS G_CDS: -3.85 Total: -123.26 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: -0.05 Total: -16.24 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -76.90 3.41 -73.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026573840.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.478 kcal (2) G-P(sol) polarization free energy of solvation -76.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds