Wall clock time and date at job start Tue Mar 31 2020 19:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99579 * 2 1 4 4 C 1.53004 * 109.46625 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46685 * 180.02562 * 4 3 2 6 6 C 1.34257 * 125.75121 * 125.27356 * 5 4 3 7 7 C 1.38045 * 107.41581 * 180.14270 * 6 5 4 8 8 C 1.47426 * 126.41587 * 179.86852 * 7 6 5 9 9 O 1.21604 * 120.00132 * 359.70705 * 8 7 6 10 10 N 1.34776 * 120.00189 * 179.71311 * 8 7 6 11 11 C 1.46496 * 120.00390 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47631 * 154.99604 * 11 10 8 13 13 C 1.52997 * 109.47060 * 59.99933 * 12 11 10 14 14 C 1.52999 * 109.47317 * 59.99960 * 13 12 11 15 15 N 1.46496 * 109.47487 * 179.97438 * 14 13 12 16 16 C 1.36933 * 120.00258 * 274.99944 * 15 14 13 17 17 H 1.07997 * 120.00195 * 0.02562 * 16 15 14 18 18 C 1.38814 * 120.00104 * 179.97438 * 16 15 14 19 19 N 1.31614 * 120.00154 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99883 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47145 * 60.00236 * 20 18 16 22 22 H 1.48498 * 109.47050 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47170 * 300.00435 * 20 18 16 24 24 C 1.53005 * 109.47159 * 300.00546 * 14 13 12 25 25 C 1.52997 * 109.47452 * 59.99536 * 24 14 13 26 26 C 1.41293 * 107.17084 * 359.60433 * 7 6 5 27 27 N 1.30446 * 108.01947 * 0.24339 * 26 7 6 28 28 H 1.08996 * 109.47529 * 300.00109 * 1 2 3 29 29 H 1.09004 * 109.47482 * 60.00145 * 1 2 3 30 30 H 1.09005 * 109.47246 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47254 * 60.00143 * 3 2 1 32 32 H 1.08998 * 109.47151 * 299.99841 * 3 2 1 33 33 H 1.08995 * 109.47124 * 60.00141 * 4 3 2 34 34 H 1.08998 * 109.47290 * 299.99834 * 4 3 2 35 35 H 1.07996 * 126.29618 * 359.97438 * 6 5 4 36 36 H 0.97001 * 120.00215 * 359.97438 * 10 8 7 37 37 H 1.09004 * 109.47374 * 34.99626 * 11 10 8 38 38 H 1.09002 * 109.47398 * 180.02562 * 12 11 10 39 39 H 1.09001 * 109.47194 * 300.00282 * 12 11 10 40 40 H 1.08996 * 109.47853 * 180.02562 * 13 12 11 41 41 H 1.09002 * 109.47153 * 300.00319 * 13 12 11 42 42 H 1.09002 * 109.46716 * 60.00091 * 14 13 12 43 43 H 0.97007 * 119.99693 * 95.00333 * 15 14 13 44 44 H 0.96996 * 120.00649 * 180.02562 * 19 18 16 45 45 H 1.09002 * 109.46935 * 299.99411 * 24 14 13 46 46 H 1.09001 * 109.46812 * 179.97438 * 24 14 13 47 47 H 1.08993 * 109.47194 * 179.97438 * 25 24 14 48 48 H 1.09002 * 109.46695 * 59.99734 * 25 24 14 49 49 H 1.08003 * 125.98839 * 180.20725 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1312 2.5231 0.0013 6 6 5.0246 2.9836 0.8913 7 6 5.3261 4.2839 0.5392 8 6 6.2614 5.1851 1.2367 9 8 6.8501 4.8008 2.2289 10 7 6.4639 6.4349 0.7748 11 6 7.3937 7.3303 1.4676 12 6 7.9213 8.3774 0.4848 13 6 6.7505 9.1898 -0.0722 14 6 6.0231 9.8901 1.0773 15 7 4.9024 10.6684 0.5440 16 6 5.1117 11.9385 0.0769 17 1 6.1031 12.3663 0.1013 18 6 4.0499 12.6758 -0.4289 19 7 2.8418 12.1543 -0.4590 20 14 4.3356 14.4081 -1.0667 21 1 5.3106 14.3689 -2.1862 22 1 3.0510 14.9764 -1.5483 23 1 4.8724 15.2563 0.0276 24 6 5.4955 8.8429 2.0603 25 6 6.6663 8.0305 2.6172 26 6 4.5752 4.5873 -0.6186 27 7 3.8695 3.5350 -0.9291 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6885 1.8464 0.8899 32 1 1.6885 1.8464 -0.8900 33 1 3.8574 0.6436 -0.8891 34 1 3.8567 0.6440 0.8908 35 1 5.4306 2.4381 1.7303 36 1 5.9945 6.7414 -0.0168 37 1 8.2278 6.7516 1.8644 38 1 8.6135 9.0433 1.0002 39 1 8.4395 7.8786 -0.3342 40 1 7.1263 9.9355 -0.7727 41 1 6.0587 8.5236 -0.5877 42 1 6.7149 10.5562 1.5928 43 1 4.0120 10.2840 0.5219 44 1 2.0999 12.6693 -0.8128 45 1 4.8037 8.1767 1.5448 46 1 4.9777 9.3418 2.8794 47 1 6.2905 7.2849 3.3177 48 1 7.3581 8.6968 3.1326 49 1 4.5836 5.5261 -1.1525 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026599918.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:27 Heat of formation + Delta-G solvation = -3.000743 kcal Electronic energy + Delta-G solvation = -28830.946329 eV Core-core repulsion = 24794.769656 eV Total energy + Delta-G solvation = -4036.176672 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.62438 -39.74045 -38.45394 -37.68878 -34.59777 -34.28687 -32.65907 -30.90850 -30.57837 -30.38656 -29.44359 -27.55283 -26.70852 -24.10406 -23.67961 -23.05051 -22.16221 -21.11086 -20.78676 -20.29377 -18.77100 -18.25916 -17.11780 -16.95791 -16.77456 -15.96450 -15.80720 -15.44520 -15.30774 -15.16110 -14.77210 -14.42904 -14.12609 -13.97641 -13.68045 -13.48783 -13.40687 -13.12024 -12.91832 -12.54576 -12.38325 -12.21946 -12.15301 -11.85728 -11.81057 -11.53699 -11.20043 -10.96693 -10.85394 -10.74014 -10.35822 -10.24961 -10.19779 -10.10963 -9.87191 -9.78230 -9.71044 -9.48157 -9.02740 -8.86429 -8.69053 -6.93640 -5.75173 -3.03445 1.32032 1.86888 2.02943 3.25898 3.38795 3.44262 3.49006 3.49707 3.50917 4.11743 4.37246 4.51140 4.56704 4.59810 4.70788 4.85323 4.86877 4.95408 5.03136 5.10590 5.14639 5.15056 5.20063 5.22833 5.30547 5.53065 5.55995 5.61497 5.68929 5.85151 5.91120 6.00818 6.08976 6.12891 6.18971 6.35962 6.43216 6.44041 6.54975 6.56198 6.56617 6.72822 6.77904 7.00957 7.13415 7.27983 7.70849 7.71511 8.39984 8.43824 9.54667 10.13838 10.48173 11.47485 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011853 B = 0.002373 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.731862 B =11795.820165 C =13541.653182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.392 6.392 3 C 0.050 3.950 4 C 0.135 3.865 5 N -0.364 5.364 6 C 0.129 3.871 7 C -0.288 4.288 8 C 0.595 3.405 9 O -0.557 6.557 10 N -0.713 5.713 11 C 0.151 3.849 12 C -0.126 4.126 13 C -0.135 4.135 14 C 0.177 3.823 15 N -0.725 5.725 16 C -0.237 4.237 17 H 0.069 0.931 18 C -0.015 4.015 19 N -0.934 5.934 20 Si 0.905 3.095 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.287 1.287 24 C -0.121 4.121 25 C -0.125 4.125 26 C 0.088 3.912 27 N -0.295 5.295 28 H 0.044 0.956 29 H 0.045 0.955 30 H 0.090 0.910 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.189 0.811 36 H 0.401 0.599 37 H 0.083 0.917 38 H 0.075 0.925 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.051 0.949 42 H 0.046 0.954 43 H 0.383 0.617 44 H 0.255 0.745 45 H 0.057 0.943 46 H 0.060 0.940 47 H 0.062 0.938 48 H 0.069 0.931 49 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.307 -24.033 1.882 24.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.310 6.310 3 C -0.028 4.028 4 C 0.014 3.986 5 N -0.144 5.144 6 C -0.021 4.021 7 C -0.303 4.303 8 C 0.382 3.618 9 O -0.437 6.437 10 N -0.364 5.364 11 C 0.046 3.954 12 C -0.165 4.165 13 C -0.176 4.176 14 C 0.068 3.932 15 N -0.365 5.365 16 C -0.368 4.368 17 H 0.087 0.913 18 C -0.210 4.210 19 N -0.582 5.582 20 Si 0.736 3.264 21 H -0.213 1.213 22 H -0.218 1.218 23 H -0.213 1.213 24 C -0.160 4.160 25 C -0.164 4.164 26 C -0.101 4.101 27 N -0.115 5.115 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.109 0.891 31 H 0.075 0.925 32 H 0.087 0.913 33 H 0.117 0.883 34 H 0.127 0.873 35 H 0.206 0.794 36 H 0.237 0.763 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.216 0.784 44 H 0.065 0.935 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.081 0.919 48 H 0.088 0.912 49 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 1.949 -24.919 1.711 25.054 hybrid contribution -0.165 1.636 -0.295 1.671 sum 1.785 -23.283 1.415 23.394 Atomic orbital electron populations 1.22792 0.79800 1.03126 1.00555 1.87765 1.20706 1.26876 1.95643 1.22659 0.92372 0.85406 1.02338 1.21477 0.92842 0.78651 1.05638 1.48332 1.32890 1.12090 1.21092 1.22966 0.90724 0.94344 0.94088 1.20334 1.10444 0.96259 1.03291 1.17184 0.80394 0.81083 0.83097 1.90744 1.50389 1.76149 1.26422 1.45921 1.46099 1.12686 1.31687 1.20948 0.91525 0.90108 0.92775 1.21854 0.99007 0.97145 0.98452 1.22269 0.96096 0.98728 1.00473 1.20228 0.90535 0.91120 0.91365 1.42432 1.06071 1.14035 1.73977 1.19198 0.94104 0.90621 1.32864 0.91293 1.24730 0.95519 0.98518 1.02281 1.69643 0.99119 1.37323 1.52161 0.86298 0.76598 0.84763 0.78712 1.21330 1.21775 1.21338 1.21759 0.97220 0.97595 0.99382 1.21874 0.98351 0.98931 0.97251 1.24187 0.93201 0.97800 0.94873 1.77197 1.24191 0.96869 1.13218 0.93711 0.93588 0.89148 0.92453 0.91317 0.88340 0.87336 0.79448 0.76318 0.89939 0.90679 0.92145 0.91707 0.93032 0.93596 0.78390 0.93531 0.92410 0.92084 0.91935 0.91239 0.79073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.07 10.70 -35.23 -0.38 -3.45 16 3 C 0.05 0.37 6.11 37.16 0.23 0.60 16 4 C 0.14 0.91 6.86 -4.04 -0.03 0.88 16 5 N -0.36 -3.48 3.65 -60.81 -0.22 -3.70 16 6 C 0.13 1.29 11.25 -16.56 -0.19 1.10 16 7 C -0.29 -3.41 6.13 -105.07 -0.64 -4.06 16 8 C 0.60 8.16 7.78 -12.52 -0.10 8.06 16 9 O -0.56 -9.18 16.56 5.27 0.09 -9.10 16 10 N -0.71 -9.01 4.22 -54.88 -0.23 -9.25 16 11 C 0.15 1.96 2.78 -67.93 -0.19 1.78 16 12 C -0.13 -1.61 5.61 -26.73 -0.15 -1.76 16 13 C -0.13 -2.18 5.33 -26.73 -0.14 -2.32 16 14 C 0.18 3.34 2.77 -67.93 -0.19 3.16 16 15 N -0.72 -17.60 5.12 -53.43 -0.27 -17.87 16 16 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 17 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 18 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 19 N -0.93 -27.93 13.06 55.49 0.72 -27.20 16 20 Si 0.91 22.22 29.55 -169.99 -5.02 17.19 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 24 C -0.12 -1.99 5.23 -26.73 -0.14 -2.13 16 25 C -0.12 -1.75 5.60 -26.73 -0.15 -1.90 16 26 C 0.09 0.98 11.50 -16.98 -0.20 0.79 16 27 N -0.30 -3.45 12.33 30.86 0.38 -3.07 16 28 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.11 0.49 8.06 -51.93 -0.42 0.07 16 35 H 0.19 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.40 4.69 5.82 -40.82 -0.24 4.45 16 37 H 0.08 1.10 7.58 -51.93 -0.39 0.71 16 38 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.05 0.81 6.51 -51.93 -0.34 0.47 16 42 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 43 H 0.38 9.96 7.80 -40.82 -0.32 9.64 16 44 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 45 H 0.06 0.96 7.60 -51.93 -0.39 0.56 16 46 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 49 H 0.19 1.76 7.50 -52.48 -0.39 1.37 16 LS Contribution 400.77 15.07 6.04 6.04 Total: -1.00 -33.73 400.77 -7.87 -41.59 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -7.96 Total: 10.41 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -1.02 Total: -1.59 kcal Atomic # 7 Polarization: -61.47 SS G_CDS: 0.38 Total: -61.10 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -0.29 Total: -12.55 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.73 -7.87 -41.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026599918.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.592 kcal (2) G-P(sol) polarization free energy of solvation -33.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds