Wall clock time and date at job start Tue Mar 31 2020 19:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42902 * 113.99579 * 2 1 4 4 C 1.53004 * 109.46625 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46685 * 180.02562 * 4 3 2 6 6 C 1.34257 * 125.75121 * 125.27356 * 5 4 3 7 7 C 1.38045 * 107.41581 * 180.14270 * 6 5 4 8 8 C 1.47426 * 126.41587 * 179.86852 * 7 6 5 9 9 O 1.21604 * 120.00132 * 359.70705 * 8 7 6 10 10 N 1.34776 * 120.00189 * 179.71311 * 8 7 6 11 11 C 1.46496 * 120.00390 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47631 * 154.99604 * 11 10 8 13 13 C 1.52997 * 109.47060 * 59.99933 * 12 11 10 14 14 C 1.52999 * 109.47317 * 59.99960 * 13 12 11 15 15 N 1.46496 * 109.47487 * 179.97438 * 14 13 12 16 16 C 1.36933 * 120.00258 * 274.99944 * 15 14 13 17 17 H 1.07997 * 120.00195 * 0.02562 * 16 15 14 18 18 C 1.38814 * 120.00104 * 179.97438 * 16 15 14 19 19 N 1.31614 * 120.00154 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99883 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.47145 * 60.00236 * 20 18 16 22 22 H 1.48498 * 109.47050 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47170 * 300.00435 * 20 18 16 24 24 C 1.53005 * 109.47159 * 300.00546 * 14 13 12 25 25 C 1.52997 * 109.47452 * 59.99536 * 24 14 13 26 26 C 1.41293 * 107.17084 * 359.60433 * 7 6 5 27 27 N 1.30446 * 108.01947 * 0.24339 * 26 7 6 28 28 H 1.08996 * 109.47529 * 300.00109 * 1 2 3 29 29 H 1.09004 * 109.47482 * 60.00145 * 1 2 3 30 30 H 1.09005 * 109.47246 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47254 * 60.00143 * 3 2 1 32 32 H 1.08998 * 109.47151 * 299.99841 * 3 2 1 33 33 H 1.08995 * 109.47124 * 60.00141 * 4 3 2 34 34 H 1.08998 * 109.47290 * 299.99834 * 4 3 2 35 35 H 1.07996 * 126.29618 * 359.97438 * 6 5 4 36 36 H 0.97001 * 120.00215 * 359.97438 * 10 8 7 37 37 H 1.09004 * 109.47374 * 34.99626 * 11 10 8 38 38 H 1.09002 * 109.47398 * 180.02562 * 12 11 10 39 39 H 1.09001 * 109.47194 * 300.00282 * 12 11 10 40 40 H 1.08996 * 109.47853 * 180.02562 * 13 12 11 41 41 H 1.09002 * 109.47153 * 300.00319 * 13 12 11 42 42 H 1.09002 * 109.46716 * 60.00091 * 14 13 12 43 43 H 0.97007 * 119.99693 * 95.00333 * 15 14 13 44 44 H 0.96996 * 120.00649 * 180.02562 * 19 18 16 45 45 H 1.09002 * 109.46935 * 299.99411 * 24 14 13 46 46 H 1.09001 * 109.46812 * 179.97438 * 24 14 13 47 47 H 1.08993 * 109.47194 * 179.97438 * 25 24 14 48 48 H 1.09002 * 109.46695 * 59.99734 * 25 24 14 49 49 H 1.08003 * 125.98839 * 180.20725 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1312 2.5231 0.0013 6 6 5.0246 2.9836 0.8913 7 6 5.3261 4.2839 0.5392 8 6 6.2614 5.1851 1.2367 9 8 6.8501 4.8008 2.2289 10 7 6.4639 6.4349 0.7748 11 6 7.3937 7.3303 1.4676 12 6 7.9213 8.3774 0.4848 13 6 6.7505 9.1898 -0.0722 14 6 6.0231 9.8901 1.0773 15 7 4.9024 10.6684 0.5440 16 6 5.1117 11.9385 0.0769 17 1 6.1031 12.3663 0.1013 18 6 4.0499 12.6758 -0.4289 19 7 2.8418 12.1543 -0.4590 20 14 4.3356 14.4081 -1.0667 21 1 5.3106 14.3689 -2.1862 22 1 3.0510 14.9764 -1.5483 23 1 4.8724 15.2563 0.0276 24 6 5.4955 8.8429 2.0603 25 6 6.6663 8.0305 2.6172 26 6 4.5752 4.5873 -0.6186 27 7 3.8695 3.5350 -0.9291 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.6885 1.8464 0.8899 32 1 1.6885 1.8464 -0.8900 33 1 3.8574 0.6436 -0.8891 34 1 3.8567 0.6440 0.8908 35 1 5.4306 2.4381 1.7303 36 1 5.9945 6.7414 -0.0168 37 1 8.2278 6.7516 1.8644 38 1 8.6135 9.0433 1.0002 39 1 8.4395 7.8786 -0.3342 40 1 7.1263 9.9355 -0.7727 41 1 6.0587 8.5236 -0.5877 42 1 6.7149 10.5562 1.5928 43 1 4.0120 10.2840 0.5219 44 1 2.0999 12.6693 -0.8128 45 1 4.8037 8.1767 1.5448 46 1 4.9777 9.3418 2.8794 47 1 6.2905 7.2849 3.3177 48 1 7.3581 8.6968 3.1326 49 1 4.5836 5.5261 -1.1525 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026599918.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:26 Heat of formation + Delta-G solvation = -25.961319 kcal Electronic energy + Delta-G solvation = -28831.941974 eV Core-core repulsion = 24794.769656 eV Total energy + Delta-G solvation = -4037.172318 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.44142 -40.85513 -39.08967 -38.87570 -36.20112 -35.02674 -34.16137 -32.44693 -31.63796 -31.45519 -30.32874 -28.98735 -27.25906 -25.65442 -24.63821 -24.05882 -23.42369 -22.35446 -21.70897 -21.27691 -20.05907 -19.12616 -18.96464 -17.70404 -17.37916 -16.94289 -16.70231 -16.58313 -16.43823 -16.18647 -15.87311 -15.54338 -15.30411 -15.17694 -14.84514 -14.74063 -14.56582 -14.26462 -13.88220 -13.78454 -13.57789 -13.10309 -13.06249 -12.97989 -12.76007 -12.73123 -12.69618 -12.37207 -12.16808 -12.02654 -11.99995 -11.90588 -11.55798 -11.42024 -10.96041 -10.86252 -10.80108 -10.78215 -10.65436 -10.02791 -9.64065 -8.93954 -7.89763 -5.16929 0.51128 1.12903 1.20107 1.49048 1.51295 1.57150 2.39886 2.52014 2.59490 2.70978 3.43424 3.49768 3.77875 3.80260 3.84405 3.85070 3.92122 4.00383 4.13054 4.18063 4.28861 4.34143 4.39776 4.43719 4.46411 4.47465 4.61570 4.63212 4.66952 4.70468 4.74491 4.78011 4.81257 4.89477 5.07748 5.18068 5.21479 5.30459 5.36471 5.38223 5.53084 5.61714 5.69714 5.72513 5.77156 5.99721 6.32958 6.46059 6.70378 7.36765 7.38703 8.17391 8.39454 9.33657 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.011853 B = 0.002373 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.731862 B =11795.820165 C =13541.653182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.403 6.403 3 C 0.055 3.945 4 C 0.131 3.869 5 N -0.358 5.358 6 C 0.141 3.859 7 C -0.312 4.312 8 C 0.597 3.403 9 O -0.588 6.588 10 N -0.709 5.709 11 C 0.154 3.846 12 C -0.113 4.113 13 C -0.125 4.125 14 C 0.173 3.827 15 N -0.738 5.738 16 C -0.232 4.232 17 H 0.075 0.925 18 C -0.079 4.079 19 N -0.971 5.971 20 Si 0.968 3.032 21 H -0.278 1.278 22 H -0.299 1.299 23 H -0.280 1.280 24 C -0.110 4.110 25 C -0.116 4.116 26 C 0.086 3.914 27 N -0.321 5.321 28 H 0.049 0.951 29 H 0.046 0.954 30 H 0.106 0.894 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.106 0.894 34 H 0.137 0.863 35 H 0.213 0.787 36 H 0.405 0.595 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.080 0.920 40 H 0.047 0.953 41 H 0.053 0.947 42 H 0.040 0.960 43 H 0.371 0.629 44 H 0.249 0.751 45 H 0.054 0.946 46 H 0.045 0.955 47 H 0.057 0.943 48 H 0.082 0.918 49 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.696 -25.228 2.017 25.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.322 6.322 3 C -0.023 4.023 4 C 0.011 3.989 5 N -0.138 5.138 6 C -0.011 4.011 7 C -0.327 4.327 8 C 0.385 3.615 9 O -0.470 6.470 10 N -0.360 5.360 11 C 0.050 3.950 12 C -0.151 4.151 13 C -0.165 4.165 14 C 0.065 3.935 15 N -0.377 5.377 16 C -0.364 4.364 17 H 0.093 0.907 18 C -0.271 4.271 19 N -0.622 5.622 20 Si 0.797 3.203 21 H -0.204 1.204 22 H -0.225 1.225 23 H -0.207 1.207 24 C -0.148 4.148 25 C -0.155 4.155 26 C -0.102 4.102 27 N -0.140 5.140 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.124 0.876 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.124 0.876 34 H 0.155 0.845 35 H 0.230 0.770 36 H 0.242 0.758 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.098 0.902 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.058 0.942 43 H 0.202 0.798 44 H 0.057 0.943 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.076 0.924 48 H 0.100 0.900 49 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 3.374 -26.134 1.836 26.415 hybrid contribution -0.609 1.904 -0.290 2.020 sum 2.765 -24.230 1.546 24.436 Atomic orbital electron populations 1.22970 0.78777 1.04330 1.00841 1.87743 1.21900 1.26848 1.95666 1.22557 0.92947 0.85297 1.01476 1.21742 0.92221 0.77474 1.07440 1.48528 1.32443 1.12489 1.20311 1.23360 0.89813 0.93854 0.94097 1.20298 1.11299 0.97024 1.04073 1.17388 0.80135 0.81273 0.82656 1.90721 1.51752 1.76746 1.27787 1.45897 1.45919 1.12491 1.31686 1.20912 0.91566 0.90095 0.92432 1.21760 0.97646 0.96742 0.98977 1.22051 0.97126 0.98509 0.98840 1.20464 0.89156 0.91300 0.92597 1.42647 1.06978 1.13871 1.74182 1.19576 0.94114 0.91604 1.31136 0.90706 1.25497 0.95484 1.02303 1.03767 1.69802 0.99801 1.38604 1.54013 0.85289 0.76129 0.80509 0.78325 1.20391 1.22541 1.20663 1.21611 0.98038 0.96958 0.98212 1.21807 0.97537 0.98620 0.97576 1.24399 0.92819 0.98225 0.94781 1.77160 1.24894 0.97564 1.14396 0.93272 0.93486 0.87551 0.92783 0.92750 0.87581 0.84529 0.77025 0.75790 0.89387 0.89486 0.90157 0.93466 0.92789 0.94193 0.79803 0.94256 0.92755 0.93603 0.92399 0.89957 0.78013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.40 -5.85 10.70 -148.98 -1.59 -7.44 16 3 C 0.05 0.77 6.11 71.98 0.44 1.21 16 4 C 0.13 1.53 6.86 86.38 0.59 2.12 16 5 N -0.36 -6.33 3.65 -346.30 -1.26 -7.59 16 6 C 0.14 2.55 11.25 84.28 0.95 3.50 16 7 C -0.31 -7.04 6.13 -20.15 -0.12 -7.16 16 8 C 0.60 15.63 7.78 86.66 0.67 16.31 16 9 O -0.59 -18.61 16.56 -4.04 -0.07 -18.68 16 10 N -0.71 -16.92 4.22 -445.80 -1.88 -18.80 16 11 C 0.15 3.70 2.78 44.99 0.13 3.83 16 12 C -0.11 -2.60 5.61 30.59 0.17 -2.42 16 13 C -0.12 -3.88 5.33 30.59 0.16 -3.71 16 14 C 0.17 6.42 2.77 44.99 0.12 6.55 16 15 N -0.74 -36.13 5.12 -322.94 -1.65 -37.78 16 16 C -0.23 -12.63 9.93 84.03 0.83 -11.80 16 17 H 0.08 3.90 7.83 -2.91 -0.02 3.88 16 18 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 19 N -0.97 -59.19 13.06 21.65 0.28 -58.90 16 20 Si 0.97 45.93 29.55 68.60 2.03 47.95 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 23 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 24 C -0.11 -3.56 5.23 30.60 0.16 -3.40 16 25 C -0.12 -3.09 5.60 30.59 0.17 -2.91 16 26 C 0.09 1.86 11.50 85.65 0.99 2.84 16 27 N -0.32 -7.25 12.33 -56.27 -0.69 -7.95 16 28 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.11 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.14 0.84 8.06 -2.39 -0.02 0.82 16 35 H 0.21 2.65 8.06 -2.91 -0.02 2.63 16 36 H 0.41 8.98 5.82 -92.71 -0.54 8.44 16 37 H 0.09 2.13 7.58 -2.39 -0.02 2.11 16 38 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.05 1.64 6.51 -2.39 -0.02 1.63 16 42 H 0.04 1.54 8.08 -2.39 -0.02 1.52 16 43 H 0.37 19.72 7.80 -92.70 -0.72 19.00 16 44 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 45 H 0.05 1.79 7.60 -2.39 -0.02 1.77 16 46 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 47 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 49 H 0.20 3.63 7.50 -2.91 -0.02 3.61 16 Total: -1.00 -72.39 400.77 1.83 -70.55 By element: Atomic # 1 Polarization: 36.48 SS G_CDS: -0.30 Total: 36.17 kcal Atomic # 6 Polarization: -4.52 SS G_CDS: 6.98 Total: 2.46 kcal Atomic # 7 Polarization: -125.81 SS G_CDS: -5.21 Total: -131.03 kcal Atomic # 8 Polarization: -24.46 SS G_CDS: -1.66 Total: -26.12 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.95 kcal Total: -72.39 1.83 -70.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026599918.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.593 kcal (2) G-P(sol) polarization free energy of solvation -72.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds