Wall clock time and date at job start Tue Mar 31 2020 20:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36946 * 119.99700 * 2 1 4 4 H 1.07995 * 119.99706 * 202.95237 * 3 2 1 5 5 C 1.38811 * 120.00023 * 22.95598 * 3 2 1 6 6 N 1.31621 * 119.99958 * 11.12232 * 5 3 2 7 7 Si 1.86804 * 119.99987 * 191.12812 * 5 3 2 8 8 H 1.48496 * 109.47273 * 89.99938 * 7 5 3 9 9 H 1.48503 * 109.46572 * 209.99829 * 7 5 3 10 10 H 1.48502 * 109.46728 * 329.99634 * 7 5 3 11 11 C 1.46490 * 120.00446 * 180.02562 * 2 1 3 12 12 H 1.08999 * 109.52992 * 179.91450 * 11 2 1 13 13 C 1.53045 * 109.49487 * 59.83555 * 11 2 1 14 14 C 1.53049 * 109.53621 * 178.68122 * 13 11 2 15 15 C 1.52761 * 109.38147 * 61.24342 * 14 13 11 16 16 N 1.46919 * 109.00905 * 305.58806 * 15 14 13 17 17 C 1.34783 * 120.62994 * 233.58537 * 16 15 14 18 18 O 1.21535 * 119.99796 * 6.76099 * 17 16 15 19 19 C 1.48001 * 120.00017 * 186.76444 * 17 16 15 20 20 N 1.34196 * 126.70163 * 7.39983 * 19 17 16 21 21 N 1.28981 * 107.25347 * 179.97438 * 20 19 17 22 22 N 1.28716 * 108.98894 * 0.02562 * 21 20 19 23 23 C 1.46500 * 125.32213 * 179.97438 * 22 21 20 24 24 C 1.53006 * 109.47058 * 0.02562 * 23 22 21 25 25 C 1.52997 * 109.47175 * 240.02558 * 23 22 21 26 26 C 1.52995 * 109.47084 * 120.02307 * 23 22 21 27 27 N 1.28868 * 109.36224 * 0.22819 * 22 21 20 28 28 C 1.46933 * 118.74105 * 53.30864 * 16 15 14 29 29 H 1.09000 * 109.46976 * 266.10058 * 1 2 3 30 30 H 1.08996 * 109.47615 * 26.09717 * 1 2 3 31 31 H 1.09000 * 109.46841 * 146.10584 * 1 2 3 32 32 H 0.97001 * 119.99631 * 180.02562 * 6 5 3 33 33 H 1.08996 * 109.46012 * 298.70742 * 13 11 2 34 34 H 1.08998 * 109.45668 * 58.66821 * 13 11 2 35 35 H 1.09003 * 109.49313 * 181.31882 * 14 13 11 36 36 H 1.08989 * 109.49777 * 301.41434 * 14 13 11 37 37 H 1.08992 * 109.50969 * 185.69940 * 15 14 13 38 38 H 1.09008 * 109.43140 * 65.41804 * 15 14 13 39 39 H 1.09004 * 109.46942 * 300.00196 * 24 23 22 40 40 H 1.08989 * 109.47115 * 179.97438 * 24 23 22 41 41 H 1.09004 * 109.46869 * 59.99836 * 24 23 22 42 42 H 1.09006 * 109.46958 * 179.97438 * 25 23 22 43 43 H 1.08999 * 109.47417 * 299.99766 * 25 23 22 44 44 H 1.08999 * 109.47636 * 60.00065 * 25 23 22 45 45 H 1.08996 * 109.47236 * 300.00132 * 26 23 22 46 46 H 1.08999 * 109.46980 * 60.00557 * 26 23 22 47 47 H 1.09006 * 109.47122 * 180.02562 * 26 23 22 48 48 H 1.08992 * 109.58768 * 66.43048 * 28 16 15 49 49 H 1.09000 * 109.58716 * 186.71741 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1655 1.2230 -0.3647 5 6 1.5380 2.3405 0.4689 6 7 0.3921 2.2636 1.1117 7 14 2.3412 4.0034 0.1873 8 1 1.8653 4.5715 -1.0996 9 1 1.9804 4.9216 1.2973 10 1 3.8163 3.8390 0.1405 11 6 2.1975 -1.2686 -0.0006 12 1 3.2694 -1.0704 -0.0020 13 6 1.8252 -2.0728 -1.2483 14 6 2.6146 -3.3839 -1.2666 15 6 2.2543 -4.2099 -0.0331 16 7 2.4684 -3.3930 1.1691 17 6 3.2421 -3.8434 2.1766 18 8 3.8685 -4.8768 2.0465 19 6 3.3288 -3.0798 3.4414 20 7 2.5973 -2.0078 3.7828 21 7 2.9789 -1.6432 4.9597 22 7 3.9099 -2.4357 5.3623 23 6 4.5994 -2.3464 6.6518 24 6 4.0414 -1.1647 7.4477 25 6 6.0971 -2.1408 6.4161 26 6 4.3797 -3.6402 7.4383 27 7 4.1443 -3.3169 4.4516 28 6 1.8279 -2.0730 1.2496 29 1 -0.3633 -0.0699 1.0253 30 1 -0.3634 0.9228 -0.4520 31 1 -0.3633 -0.8530 -0.5731 32 1 -0.0355 3.0704 1.4390 33 1 0.7575 -2.2919 -1.2338 34 1 2.0646 -1.4924 -2.1392 35 1 2.3664 -3.9454 -2.1673 36 1 3.6824 -3.1657 -1.2561 37 1 2.8878 -5.0958 0.0094 38 1 1.2076 -4.5090 -0.0901 39 1 4.1979 -0.2430 6.8873 40 1 4.5541 -1.0985 8.4072 41 1 2.9744 -1.3112 7.6155 42 1 6.6100 -2.0739 7.3756 43 1 6.4946 -2.9826 5.8491 44 1 6.2536 -1.2191 5.8558 45 1 3.3127 -3.7866 7.6062 46 1 4.7772 -4.4820 6.8713 47 1 4.8924 -3.5735 8.3979 48 1 0.7459 -2.1943 1.2994 49 1 2.1784 -1.5505 2.1397 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027421153.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:14 Heat of formation + Delta-G solvation = 133.182469 kcal Electronic energy + Delta-G solvation = -30815.533419 eV Core-core repulsion = 26817.554845 eV Total energy + Delta-G solvation = -3997.978574 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -44.32833 -39.87725 -37.81936 -37.42279 -34.92697 -33.50847 -32.91130 -31.98907 -31.22291 -28.66366 -27.96591 -27.93892 -26.10062 -25.95098 -24.72861 -23.91117 -23.36184 -21.51855 -20.80944 -19.95282 -18.85227 -17.41636 -17.32604 -16.80622 -16.53133 -16.01909 -15.16636 -14.78970 -14.58191 -14.47778 -14.35010 -13.92190 -13.86189 -13.59311 -13.32808 -13.21592 -12.88840 -12.72286 -12.63862 -12.54617 -12.30739 -12.21441 -12.03218 -11.87272 -11.80422 -11.47624 -11.19255 -11.01418 -10.91176 -10.81049 -10.76549 -10.51062 -10.32349 -10.29517 -10.28059 -10.20801 -9.84477 -9.79756 -9.51218 -8.54128 -8.32720 -6.69729 -5.69705 -3.13951 1.11668 1.63186 1.69095 2.89185 3.25665 3.40327 3.46472 3.47696 3.86866 4.07704 4.15921 4.26150 4.51225 4.60802 5.00405 5.03478 5.06802 5.13834 5.21971 5.26265 5.27632 5.31400 5.34356 5.36998 5.49839 5.57558 5.62609 5.63672 5.70364 5.76495 5.79276 5.87623 6.00153 6.12847 6.16193 6.23681 6.34966 6.42754 6.56237 6.76860 6.89784 7.00523 7.06310 7.46228 7.52019 7.75618 7.86017 8.09459 8.41161 8.45598 9.27971 9.90289 10.39558 11.36181 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.009401 B = 0.004379 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2977.769587 B = 6392.471471 C = 8642.068115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.588 5.588 3 C -0.254 4.254 4 H 0.067 0.933 5 C 0.005 3.995 6 N -0.903 5.903 7 Si 0.903 3.097 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.281 1.281 11 C 0.169 3.831 12 H 0.062 0.938 13 C -0.135 4.135 14 C -0.130 4.130 15 C 0.115 3.885 16 N -0.582 5.582 17 C 0.615 3.385 18 O -0.528 6.528 19 C 0.129 3.871 20 N -0.236 5.236 21 N -0.053 5.053 22 N -0.129 5.129 23 C 0.177 3.823 24 C -0.154 4.154 25 C -0.160 4.160 26 C -0.159 4.159 27 N -0.252 5.252 28 C 0.066 3.934 29 H 0.018 0.982 30 H 0.060 0.940 31 H -0.005 1.005 32 H 0.252 0.748 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.090 0.910 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.078 0.922 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.078 0.922 47 H 0.090 0.910 48 H 0.067 0.933 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.829 -11.760 10.208 17.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.310 5.310 3 C -0.384 4.384 4 H 0.085 0.915 5 C -0.194 4.194 6 N -0.548 5.548 7 Si 0.733 3.267 8 H -0.215 1.215 9 H -0.217 1.217 10 H -0.206 1.206 11 C 0.060 3.940 12 H 0.080 0.920 13 C -0.175 4.175 14 C -0.169 4.169 15 C -0.007 4.007 16 N -0.314 5.314 17 C 0.397 3.603 18 O -0.403 6.403 19 C -0.155 4.155 20 N -0.110 5.110 21 N -0.045 5.045 22 N -0.043 5.043 23 C 0.096 3.904 24 C -0.212 4.212 25 C -0.219 4.219 26 C -0.217 4.217 27 N -0.105 5.105 28 C -0.058 4.058 29 H 0.037 0.963 30 H 0.078 0.922 31 H 0.013 0.987 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.108 0.892 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.096 0.904 42 H 0.109 0.891 43 H 0.097 0.903 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.097 0.903 47 H 0.109 0.891 48 H 0.086 0.914 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.914 -11.692 10.662 17.268 hybrid contribution 0.335 0.782 -0.368 0.927 sum 7.249 -10.911 10.294 16.660 Atomic orbital electron populations 1.20809 0.82493 0.97337 0.97766 1.43897 1.01881 0.99848 1.85354 1.19219 0.98315 0.85349 1.35470 0.91544 1.25004 0.97781 0.98413 0.98163 1.70071 1.18022 1.27108 1.39626 0.86277 0.78818 0.84273 0.77283 1.21504 1.21740 1.20627 1.20624 0.96306 0.86363 0.90741 0.91993 1.22106 0.99763 0.95021 1.00562 1.21827 1.01136 0.97217 0.96710 1.21607 1.01551 0.94194 0.83347 1.48080 1.47283 1.19700 1.16370 1.16206 0.80184 0.83472 0.80441 1.90778 1.44711 1.24009 1.80770 1.25282 0.95566 0.96831 0.97782 1.76258 1.21470 1.09887 1.03382 1.79027 1.02763 1.15879 1.06876 1.50727 1.23217 1.15742 1.14639 1.21464 0.93073 0.99690 0.76131 1.22114 1.02881 0.96281 0.99958 1.22258 0.91261 1.04173 1.04192 1.22244 1.03718 0.95199 1.00565 1.74904 1.22388 1.14743 0.98485 1.23504 0.97979 0.80179 1.04147 0.96346 0.92162 0.98652 0.93744 0.92104 0.91669 0.90980 0.91720 0.89207 0.91156 0.90233 0.89255 0.90431 0.89121 0.90328 0.91121 0.91312 0.90330 0.89119 0.91442 0.85643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.90 7.98 59.85 0.48 4.38 16 2 N -0.59 -14.58 2.82 -173.35 -0.49 -15.07 16 3 C -0.25 -6.96 9.60 -15.06 -0.14 -7.10 16 4 H 0.07 1.80 7.81 -52.49 -0.41 1.39 16 5 C 0.00 0.14 5.09 -17.43 -0.09 0.05 16 6 N -0.90 -26.17 10.65 55.49 0.59 -25.58 16 7 Si 0.90 21.93 29.57 -169.99 -5.03 16.91 16 8 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 9 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 C 0.17 3.50 2.75 -67.81 -0.19 3.31 16 12 H 0.06 1.36 7.87 -51.93 -0.41 0.95 16 13 C -0.13 -2.30 5.11 -26.68 -0.14 -2.44 16 14 C -0.13 -1.82 6.07 -26.83 -0.16 -1.98 16 15 C 0.11 1.65 6.41 -3.94 -0.03 1.63 16 16 N -0.58 -10.12 2.98 -174.09 -0.52 -10.64 16 17 C 0.62 11.42 7.70 -12.26 -0.09 11.33 16 18 O -0.53 -10.44 16.52 5.33 0.09 -10.36 16 19 C 0.13 2.38 7.80 -156.23 -1.22 1.16 16 20 N -0.24 -4.56 9.07 32.10 0.29 -4.27 16 21 N -0.05 -0.92 12.21 60.35 0.74 -0.18 16 22 N -0.13 -1.86 3.72 0.52 0.00 -1.86 16 23 C 0.18 1.66 1.30 -131.82 -0.17 1.49 16 24 C -0.15 -1.21 7.90 37.16 0.29 -0.92 16 25 C -0.16 -1.26 8.66 37.16 0.32 -0.94 16 26 C -0.16 -1.16 8.66 37.16 0.32 -0.84 16 27 N -0.25 -4.18 11.86 32.11 0.38 -3.80 16 28 C 0.07 1.29 5.48 -3.71 -0.02 1.27 16 29 H 0.02 0.48 7.84 -51.93 -0.41 0.07 16 30 H 0.06 1.60 6.66 -51.93 -0.35 1.25 16 31 H 0.00 -0.10 6.46 -51.93 -0.34 -0.44 16 32 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.06 1.03 6.74 -51.93 -0.35 0.68 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.06 0.94 8.14 -51.94 -0.42 0.52 16 37 H 0.09 1.26 7.00 -51.93 -0.36 0.90 16 38 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.09 0.41 8.14 -51.94 -0.42 -0.01 16 41 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.07 1.34 7.51 -51.93 -0.39 0.95 16 49 H 0.13 2.73 4.16 -66.13 -0.28 2.46 16 LS Contribution 387.41 15.07 5.84 5.84 Total: -1.00 -32.91 387.41 -6.85 -39.77 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -7.92 Total: -1.16 kcal Atomic # 6 Polarization: 11.24 SS G_CDS: -0.83 Total: 10.41 kcal Atomic # 7 Polarization: -62.39 SS G_CDS: 1.00 Total: -61.40 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.91 -6.85 -39.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027421153.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.948 kcal (2) G-P(sol) polarization free energy of solvation -32.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds