Wall clock time and date at job start Tue Mar 31 2020 20:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36946 * 119.99700 * 2 1 4 4 H 1.07995 * 119.99706 * 202.95237 * 3 2 1 5 5 C 1.38811 * 120.00023 * 22.95598 * 3 2 1 6 6 N 1.31621 * 119.99958 * 11.12232 * 5 3 2 7 7 Si 1.86804 * 119.99987 * 191.12812 * 5 3 2 8 8 H 1.48496 * 109.47273 * 89.99938 * 7 5 3 9 9 H 1.48503 * 109.46572 * 209.99829 * 7 5 3 10 10 H 1.48502 * 109.46728 * 329.99634 * 7 5 3 11 11 C 1.46490 * 120.00446 * 180.02562 * 2 1 3 12 12 H 1.08999 * 109.52992 * 179.91450 * 11 2 1 13 13 C 1.53045 * 109.49487 * 59.83555 * 11 2 1 14 14 C 1.53049 * 109.53621 * 178.68122 * 13 11 2 15 15 C 1.52761 * 109.38147 * 61.24342 * 14 13 11 16 16 N 1.46919 * 109.00905 * 305.58806 * 15 14 13 17 17 C 1.34783 * 120.62994 * 233.58537 * 16 15 14 18 18 O 1.21535 * 119.99796 * 6.76099 * 17 16 15 19 19 C 1.48001 * 120.00017 * 186.76444 * 17 16 15 20 20 N 1.34196 * 126.70163 * 7.39983 * 19 17 16 21 21 N 1.28981 * 107.25347 * 179.97438 * 20 19 17 22 22 N 1.28716 * 108.98894 * 0.02562 * 21 20 19 23 23 C 1.46500 * 125.32213 * 179.97438 * 22 21 20 24 24 C 1.53006 * 109.47058 * 0.02562 * 23 22 21 25 25 C 1.52997 * 109.47175 * 240.02558 * 23 22 21 26 26 C 1.52995 * 109.47084 * 120.02307 * 23 22 21 27 27 N 1.28868 * 109.36224 * 0.22819 * 22 21 20 28 28 C 1.46933 * 118.74105 * 53.30864 * 16 15 14 29 29 H 1.09000 * 109.46976 * 266.10058 * 1 2 3 30 30 H 1.08996 * 109.47615 * 26.09717 * 1 2 3 31 31 H 1.09000 * 109.46841 * 146.10584 * 1 2 3 32 32 H 0.97001 * 119.99631 * 180.02562 * 6 5 3 33 33 H 1.08996 * 109.46012 * 298.70742 * 13 11 2 34 34 H 1.08998 * 109.45668 * 58.66821 * 13 11 2 35 35 H 1.09003 * 109.49313 * 181.31882 * 14 13 11 36 36 H 1.08989 * 109.49777 * 301.41434 * 14 13 11 37 37 H 1.08992 * 109.50969 * 185.69940 * 15 14 13 38 38 H 1.09008 * 109.43140 * 65.41804 * 15 14 13 39 39 H 1.09004 * 109.46942 * 300.00196 * 24 23 22 40 40 H 1.08989 * 109.47115 * 179.97438 * 24 23 22 41 41 H 1.09004 * 109.46869 * 59.99836 * 24 23 22 42 42 H 1.09006 * 109.46958 * 179.97438 * 25 23 22 43 43 H 1.08999 * 109.47417 * 299.99766 * 25 23 22 44 44 H 1.08999 * 109.47636 * 60.00065 * 25 23 22 45 45 H 1.08996 * 109.47236 * 300.00132 * 26 23 22 46 46 H 1.08999 * 109.46980 * 60.00557 * 26 23 22 47 47 H 1.09006 * 109.47122 * 180.02562 * 26 23 22 48 48 H 1.08992 * 109.58768 * 66.43048 * 28 16 15 49 49 H 1.09000 * 109.58716 * 186.71741 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1655 1.2230 -0.3647 5 6 1.5380 2.3405 0.4689 6 7 0.3921 2.2636 1.1117 7 14 2.3412 4.0034 0.1873 8 1 1.8653 4.5715 -1.0996 9 1 1.9804 4.9216 1.2973 10 1 3.8163 3.8390 0.1405 11 6 2.1975 -1.2686 -0.0006 12 1 3.2694 -1.0704 -0.0020 13 6 1.8252 -2.0728 -1.2483 14 6 2.6146 -3.3839 -1.2666 15 6 2.2543 -4.2099 -0.0331 16 7 2.4684 -3.3930 1.1691 17 6 3.2421 -3.8434 2.1766 18 8 3.8685 -4.8768 2.0465 19 6 3.3288 -3.0798 3.4414 20 7 2.5973 -2.0078 3.7828 21 7 2.9789 -1.6432 4.9597 22 7 3.9099 -2.4357 5.3623 23 6 4.5994 -2.3464 6.6518 24 6 4.0414 -1.1647 7.4477 25 6 6.0971 -2.1408 6.4161 26 6 4.3797 -3.6402 7.4383 27 7 4.1443 -3.3169 4.4516 28 6 1.8279 -2.0730 1.2496 29 1 -0.3633 -0.0699 1.0253 30 1 -0.3634 0.9228 -0.4520 31 1 -0.3633 -0.8530 -0.5731 32 1 -0.0355 3.0704 1.4390 33 1 0.7575 -2.2919 -1.2338 34 1 2.0646 -1.4924 -2.1392 35 1 2.3664 -3.9454 -2.1673 36 1 3.6824 -3.1657 -1.2561 37 1 2.8878 -5.0958 0.0094 38 1 1.2076 -4.5090 -0.0901 39 1 4.1979 -0.2430 6.8873 40 1 4.5541 -1.0985 8.4072 41 1 2.9744 -1.3112 7.6155 42 1 6.6100 -2.0739 7.3756 43 1 6.4946 -2.9826 5.8491 44 1 6.2536 -1.2191 5.8558 45 1 3.3127 -3.7866 7.6062 46 1 4.7772 -4.4820 6.8713 47 1 4.8924 -3.5735 8.3979 48 1 0.7459 -2.1943 1.2994 49 1 2.1784 -1.5505 2.1397 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027421153.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:13 Heat of formation + Delta-G solvation = 112.172009 kcal Electronic energy + Delta-G solvation = -30816.444501 eV Core-core repulsion = 26817.554845 eV Total energy + Delta-G solvation = -3998.889656 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -45.61818 -41.31054 -39.04140 -38.64397 -36.70180 -34.76966 -34.26997 -33.59331 -32.76796 -30.37829 -28.68709 -28.54911 -27.99666 -27.41520 -25.98011 -25.26325 -25.12621 -22.93615 -21.97263 -21.42748 -20.28109 -18.90540 -18.59731 -18.39092 -17.81078 -17.45777 -16.93515 -16.30928 -15.85943 -15.61516 -15.36527 -15.27638 -15.16360 -15.10237 -14.91267 -14.37816 -14.11177 -13.96991 -13.71001 -13.56117 -13.47637 -13.28586 -13.24704 -12.95347 -12.87356 -12.81803 -12.65445 -12.48358 -12.38200 -12.16718 -12.15339 -12.11724 -12.10472 -12.03513 -11.71351 -11.56845 -11.52042 -11.49362 -11.06224 -10.57242 -9.83738 -8.70830 -7.81061 -5.27306 -0.18563 0.23737 0.66235 1.46228 1.46266 1.55008 1.57787 1.82353 2.49327 2.66617 2.90763 3.33878 3.46359 3.47310 3.59883 3.69315 3.84710 4.02460 4.05558 4.16629 4.24753 4.26806 4.40231 4.40309 4.50801 4.54398 4.58510 4.62949 4.69640 4.70470 4.75875 4.83267 4.98495 4.99565 5.03107 5.07607 5.09161 5.13925 5.18092 5.20917 5.34576 5.39185 5.49456 5.60810 5.64270 5.77872 6.04240 6.37462 6.68016 7.06642 7.18663 7.89819 8.33385 9.22965 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.009401 B = 0.004379 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2977.769587 B = 6392.471471 C = 8642.068115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.603 5.603 3 C -0.263 4.263 4 H 0.064 0.936 5 C -0.046 4.046 6 N -0.932 5.932 7 Si 0.964 3.036 8 H -0.283 1.283 9 H -0.295 1.295 10 H -0.274 1.274 11 C 0.167 3.833 12 H 0.043 0.957 13 C -0.124 4.124 14 C -0.119 4.119 15 C 0.109 3.891 16 N -0.577 5.577 17 C 0.615 3.385 18 O -0.543 6.543 19 C 0.110 3.890 20 N -0.267 5.267 21 N -0.069 5.069 22 N -0.107 5.107 23 C 0.156 3.844 24 C -0.152 4.152 25 C -0.157 4.157 26 C -0.153 4.153 27 N -0.253 5.253 28 C 0.081 3.919 29 H -0.007 1.007 30 H 0.032 0.968 31 H 0.029 0.971 32 H 0.248 0.752 33 H 0.067 0.933 34 H 0.060 0.940 35 H 0.110 0.890 36 H 0.058 0.942 37 H 0.098 0.902 38 H 0.092 0.908 39 H 0.061 0.939 40 H 0.132 0.868 41 H 0.067 0.933 42 H 0.133 0.867 43 H 0.067 0.933 44 H 0.054 0.946 45 H 0.060 0.940 46 H 0.067 0.933 47 H 0.132 0.868 48 H 0.064 0.936 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.026 -12.950 10.702 18.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.325 5.325 3 C -0.393 4.393 4 H 0.082 0.918 5 C -0.241 4.241 6 N -0.578 5.578 7 Si 0.792 3.208 8 H -0.210 1.210 9 H -0.221 1.221 10 H -0.199 1.199 11 C 0.059 3.941 12 H 0.061 0.939 13 C -0.164 4.164 14 C -0.157 4.157 15 C -0.011 4.011 16 N -0.309 5.309 17 C 0.397 3.603 18 O -0.419 6.419 19 C -0.173 4.173 20 N -0.140 5.140 21 N -0.060 5.060 22 N -0.024 5.024 23 C 0.078 3.922 24 C -0.209 4.209 25 C -0.215 4.215 26 C -0.212 4.212 27 N -0.107 5.107 28 C -0.044 4.044 29 H 0.011 0.989 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.057 0.943 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.128 0.872 36 H 0.077 0.923 37 H 0.117 0.883 38 H 0.110 0.890 39 H 0.080 0.920 40 H 0.150 0.850 41 H 0.086 0.914 42 H 0.151 0.849 43 H 0.086 0.914 44 H 0.074 0.926 45 H 0.079 0.921 46 H 0.086 0.914 47 H 0.151 0.849 48 H 0.082 0.918 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 8.119 -12.907 11.134 18.880 hybrid contribution 0.058 1.094 -0.403 1.167 sum 8.177 -11.813 10.731 17.932 Atomic orbital electron populations 1.20523 0.82458 0.97243 0.96434 1.44063 1.02126 1.00668 1.85664 1.19484 0.98335 0.86715 1.34814 0.91828 1.25699 0.98490 1.01511 0.98415 1.70229 1.19294 1.27480 1.40844 0.85323 0.78213 0.80271 0.76956 1.20958 1.22109 1.19909 1.20758 0.94832 0.85508 0.93042 0.93853 1.21953 1.00611 0.95904 0.97906 1.21781 1.00161 0.95688 0.98086 1.21908 1.03171 0.94002 0.82040 1.48072 1.46600 1.19066 1.17200 1.16259 0.80039 0.83317 0.80675 1.90756 1.45367 1.24575 1.81165 1.25366 0.96342 0.97185 0.98439 1.76220 1.22709 1.10670 1.04407 1.78940 1.03879 1.16618 1.06583 1.51389 1.21832 1.13972 1.15228 1.22270 0.93779 1.01688 0.74449 1.22184 1.02842 0.94592 1.01328 1.22313 0.90136 1.02844 1.06196 1.22292 1.03761 0.93262 1.01854 1.74862 1.22083 1.15241 0.98531 1.23074 0.97592 0.81075 1.02682 0.98899 0.94897 0.95285 0.94260 0.91433 0.92160 0.87162 0.92340 0.88349 0.88968 0.92010 0.84997 0.91377 0.84873 0.91393 0.92637 0.92062 0.91424 0.84947 0.91770 0.87696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.81 7.98 127.77 1.02 9.83 16 2 N -0.60 -30.39 2.82 -702.37 -1.98 -32.36 16 3 C -0.26 -14.71 9.60 84.03 0.81 -13.90 16 4 H 0.06 3.51 7.81 -2.91 -0.02 3.49 16 5 C -0.05 -2.58 5.09 84.86 0.43 -2.15 16 6 N -0.93 -55.55 10.65 21.65 0.23 -55.31 16 7 Si 0.96 45.78 29.57 68.60 2.03 47.81 16 8 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 9 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 10 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 11 C 0.17 6.93 2.75 45.07 0.12 7.05 16 12 H 0.04 1.94 7.87 -2.39 -0.02 1.92 16 13 C -0.12 -4.03 5.11 30.63 0.16 -3.88 16 14 C -0.12 -2.99 6.07 30.53 0.19 -2.80 16 15 C 0.11 2.90 6.41 86.22 0.55 3.45 16 16 N -0.58 -19.84 2.98 -822.97 -2.45 -22.29 16 17 C 0.61 22.94 7.70 86.83 0.67 23.61 16 18 O -0.54 -21.26 16.52 -3.83 -0.06 -21.33 16 19 C 0.11 4.17 7.80 137.14 1.07 5.24 16 20 N -0.27 -10.74 9.07 -52.36 -0.47 -11.21 16 21 N -0.07 -2.44 12.21 37.02 0.45 -1.99 16 22 N -0.11 -3.12 3.72 -152.26 -0.57 -3.69 16 23 C 0.16 2.72 1.30 3.60 0.00 2.73 16 24 C -0.15 -2.14 7.90 71.98 0.57 -1.57 16 25 C -0.16 -2.18 8.66 71.98 0.62 -1.56 16 26 C -0.15 -1.90 8.66 71.98 0.62 -1.28 16 27 N -0.25 -8.50 11.86 -52.31 -0.62 -9.12 16 28 C 0.08 3.20 5.48 86.36 0.47 3.68 16 29 H -0.01 -0.40 7.84 -2.39 -0.02 -0.42 16 30 H 0.03 1.77 6.66 -2.39 -0.02 1.76 16 31 H 0.03 1.21 6.46 -2.39 -0.02 1.20 16 32 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 33 H 0.07 2.11 6.74 -2.39 -0.02 2.09 16 34 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 35 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.10 2.52 7.00 -2.39 -0.02 2.50 16 38 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 39 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 40 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 42 H 0.13 0.71 8.14 -2.38 -0.02 0.69 16 43 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 45 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 47 H 0.13 0.55 8.14 -2.38 -0.02 0.53 16 48 H 0.06 2.57 7.51 -2.39 -0.02 2.56 16 49 H 0.11 4.75 4.16 -20.74 -0.09 4.67 16 Total: -1.00 -74.41 387.41 4.73 -69.67 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 0.87 Total: 11.40 kcal Atomic # 6 Polarization: 21.12 SS G_CDS: 7.31 Total: 28.43 kcal Atomic # 7 Polarization: -130.57 SS G_CDS: -5.41 Total: -135.98 kcal Atomic # 8 Polarization: -21.26 SS G_CDS: -0.06 Total: -21.33 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -74.41 4.73 -69.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027421153.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.843 kcal (2) G-P(sol) polarization free energy of solvation -74.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds