Wall clock time and date at job start Tue Mar 31 2020 19:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47473 * 2 1 4 4 C 1.50703 * 109.46971 * 119.99854 * 2 1 3 5 5 N 1.31074 * 126.65814 * 300.04492 * 4 2 1 6 6 N 1.28843 * 107.99024 * 179.97438 * 5 4 2 7 7 N 1.28740 * 109.39409 * 359.73037 * 6 5 4 8 8 N 1.29009 * 108.81060 * 0.43865 * 7 6 5 9 9 C 1.46501 * 126.43909 * 179.83348 * 8 7 6 10 10 C 1.50697 * 109.47362 * 269.69129 * 9 8 7 11 11 O 1.21279 * 120.00001 * 0.02562 * 10 9 8 12 12 N 1.34780 * 120.00105 * 180.27128 * 10 9 8 13 13 C 1.46926 * 120.63144 * 359.73307 * 12 10 9 14 14 C 1.53193 * 108.77267 * 233.58150 * 13 12 10 15 15 C 1.53037 * 109.31513 * 305.36471 * 14 13 12 16 16 C 1.53043 * 109.53730 * 61.36006 * 15 14 13 17 17 H 1.09000 * 109.49653 * 58.59435 * 16 15 14 18 18 N 1.46506 * 109.49431 * 178.65191 * 16 15 14 19 19 C 1.46497 * 120.00148 * 60.00498 * 18 16 15 20 20 C 1.36941 * 119.99777 * 240.00135 * 18 16 15 21 21 H 1.07991 * 120.00075 * 22.07743 * 20 18 16 22 22 C 1.38819 * 119.99765 * 202.06786 * 20 18 16 23 23 N 1.31623 * 119.99498 * 12.40865 * 22 20 18 24 24 Si 1.86792 * 120.00157 * 192.40421 * 22 20 18 25 25 H 1.48509 * 109.47042 * 60.00148 * 24 22 20 26 26 H 1.48495 * 109.47333 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47033 * 300.00590 * 24 22 20 28 28 C 1.46926 * 120.63027 * 179.44357 * 12 10 9 29 29 H 1.09000 * 109.47329 * 300.00612 * 1 2 3 30 30 H 1.09002 * 109.47074 * 60.00308 * 1 2 3 31 31 H 1.08999 * 109.47598 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47329 * 239.99388 * 2 1 3 33 33 H 1.09002 * 109.46719 * 299.99909 * 3 2 1 34 34 H 1.09000 * 109.47343 * 59.99397 * 3 2 1 35 35 H 1.08991 * 109.47482 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.47019 * 149.69079 * 9 8 7 37 37 H 1.08998 * 109.47084 * 29.69471 * 9 8 7 38 38 H 1.08997 * 109.58478 * 353.36711 * 13 12 10 39 39 H 1.09000 * 109.59000 * 113.79422 * 13 12 10 40 40 H 1.09008 * 109.49938 * 65.31129 * 14 13 12 41 41 H 1.09001 * 109.49803 * 185.40911 * 14 13 12 42 42 H 1.08998 * 109.46489 * 181.38632 * 15 14 13 43 43 H 1.09002 * 109.45613 * 301.36300 * 15 14 13 44 44 H 1.08998 * 109.47104 * 94.30045 * 19 18 16 45 45 H 1.08996 * 109.47687 * 214.30571 * 19 18 16 46 46 H 1.09007 * 109.46702 * 334.30845 * 19 18 16 47 47 H 0.97001 * 119.99175 * 179.97438 * 23 22 20 48 48 H 1.08995 * 109.59391 * 246.20672 * 28 12 10 49 49 H 1.09008 * 109.58312 * 6.63481 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7967 -0.3787 2.4765 6 7 2.3978 -1.2292 3.2351 7 7 3.0060 -2.0981 2.5053 8 7 2.8092 -1.8090 1.2635 9 6 3.3287 -2.5423 0.1065 10 6 4.6668 -1.9733 -0.2895 11 8 5.1402 -1.0468 0.3337 12 7 5.3352 -2.4908 -1.3392 13 6 4.7749 -3.6134 -2.1037 14 6 5.8140 -4.7376 -2.1617 15 6 7.1256 -4.1861 -2.7251 16 6 7.6558 -3.0853 -1.8034 17 1 7.8090 -3.4908 -0.8033 18 7 8.9277 -2.5802 -2.3264 19 6 8.9842 -1.9806 -3.6618 20 6 10.0637 -2.6685 -1.5669 21 1 10.1262 -3.3963 -0.7714 22 6 11.1350 -1.8227 -1.8195 23 7 10.9801 -0.7834 -2.6123 24 14 12.7962 -2.1593 -1.0345 25 1 13.2847 -3.4947 -1.4629 26 1 13.7650 -1.1174 -1.4599 27 1 12.6594 -2.1333 0.4440 28 6 6.6350 -1.9388 -1.7448 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.6767 1.9562 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.1299 1.4424 0.0005 36 1 2.6324 -2.4468 -0.7267 37 1 3.4436 -3.5948 0.3651 38 1 3.8719 -3.9755 -1.6123 39 1 4.5361 -3.2840 -3.1149 40 1 5.9846 -5.1276 -1.1582 41 1 5.4490 -5.5375 -2.8061 42 1 7.8592 -4.9896 -2.7905 43 1 6.9491 -3.7737 -3.7185 44 1 8.8747 -0.8993 -3.5795 45 1 9.9427 -2.2146 -4.1250 46 1 8.1769 -2.3818 -4.2747 47 1 11.7287 -0.1922 -2.7885 48 1 6.5449 -1.4756 -2.7273 49 1 6.9597 -1.1956 -1.0165 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027608412.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:13 Heat of formation + Delta-G solvation = 106.882077 kcal Electronic energy + Delta-G solvation = -30380.047314 eV Core-core repulsion = 26380.928269 eV Total energy + Delta-G solvation = -3999.119045 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -44.28330 -40.32138 -37.80439 -36.41483 -35.48673 -35.29069 -32.63809 -31.63396 -31.41675 -29.87378 -28.43729 -27.54316 -26.09615 -25.34106 -24.57592 -23.88415 -23.11803 -21.88398 -21.02501 -20.02710 -18.92890 -18.15604 -17.56945 -16.85744 -16.48846 -16.11926 -15.72679 -15.31607 -15.00359 -14.84247 -14.37772 -14.16407 -13.88685 -13.61724 -13.57898 -13.47321 -13.17462 -12.79200 -12.69483 -12.53259 -12.47126 -12.25276 -12.02102 -11.95509 -11.67601 -11.49780 -11.41939 -11.33035 -11.16637 -11.08289 -10.85842 -10.76412 -10.53197 -10.47643 -10.31923 -10.16681 -9.98304 -9.88613 -9.79766 -8.74206 -8.53709 -6.85763 -5.79597 -3.25793 1.07894 1.66671 2.19261 2.28521 2.83192 3.36735 3.41881 3.42534 3.64078 3.90006 3.97169 4.16574 4.37511 4.42988 4.61706 4.64012 4.74114 4.87700 4.91070 5.07477 5.26277 5.29030 5.30806 5.35081 5.37230 5.39305 5.50550 5.55407 5.57740 5.61310 5.70851 5.79887 5.83251 5.92696 5.95861 5.99161 6.06837 6.20012 6.32296 6.40818 6.64252 6.77032 6.82450 7.25680 7.29815 7.63248 7.74824 7.91103 8.32039 8.54473 9.15933 9.77843 10.25228 11.25137 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015271 B = 0.002893 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.105720 B = 9677.303630 C =10111.914423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.010 4.010 3 C -0.145 4.145 4 C 0.201 3.799 5 N -0.301 5.301 6 N -0.075 5.075 7 N -0.084 5.084 8 N -0.293 5.293 9 C 0.092 3.908 10 C 0.496 3.504 11 O -0.518 6.518 12 N -0.596 5.596 13 C 0.102 3.898 14 C -0.132 4.132 15 C -0.134 4.134 16 C 0.169 3.831 17 H 0.066 0.934 18 N -0.590 5.590 19 C 0.161 3.839 20 C -0.260 4.260 21 H 0.069 0.931 22 C 0.005 3.995 23 N -0.906 5.906 24 Si 0.907 3.093 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.282 1.282 28 C 0.098 3.902 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.090 0.910 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.136 0.864 37 H 0.141 0.859 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.060 0.940 44 H 0.029 0.971 45 H 0.045 0.955 46 H -0.001 1.001 47 H 0.254 0.746 48 H 0.066 0.934 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.076 -4.806 -3.579 22.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.032 4.032 3 C -0.203 4.203 4 C -0.077 4.077 5 N -0.150 5.150 6 N -0.068 5.068 7 N -0.070 5.070 8 N -0.094 5.094 9 C -0.034 4.034 10 C 0.280 3.720 11 O -0.393 6.393 12 N -0.331 5.331 13 C -0.021 4.021 14 C -0.171 4.171 15 C -0.174 4.174 16 C 0.059 3.941 17 H 0.084 0.916 18 N -0.312 5.312 19 C 0.017 3.983 20 C -0.390 4.390 21 H 0.086 0.914 22 C -0.194 4.194 23 N -0.550 5.550 24 Si 0.736 3.264 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.208 1.208 28 C -0.025 4.025 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.083 0.917 36 H 0.154 0.846 37 H 0.159 0.841 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.079 0.921 44 H 0.047 0.953 45 H 0.064 0.936 46 H 0.018 0.982 47 H 0.064 0.936 48 H 0.085 0.915 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -21.508 -4.326 -1.871 22.018 hybrid contribution 1.145 -0.248 -0.676 1.352 sum -20.363 -4.574 -2.546 21.025 Atomic orbital electron populations 1.21847 0.91978 1.02584 1.03700 1.19785 0.97214 0.96680 0.89533 1.21834 1.02226 0.92917 1.03335 1.26061 0.94868 0.88784 0.97981 1.74930 1.20782 1.20931 0.98325 1.78596 1.06926 0.98893 1.22413 1.78893 1.18922 1.21932 0.87210 1.47895 1.33708 1.20869 1.06887 1.22104 0.96605 0.98602 0.86064 1.20201 0.86098 0.84261 0.81467 1.90838 1.68028 1.28305 1.52168 1.48311 1.21651 1.33698 1.29403 1.21871 0.96363 0.87093 0.96728 1.21914 0.96142 0.96865 1.02163 1.22107 0.95385 0.99820 1.00087 1.20722 0.85763 0.91255 0.96360 0.91616 1.43947 1.02570 1.70437 1.14200 1.20808 0.97178 0.96324 0.84006 1.19185 0.91552 1.13839 1.14375 0.91352 1.25032 0.99350 0.95439 0.99544 1.70056 1.30537 1.14429 1.39998 0.86304 0.83635 0.77308 0.79116 1.21008 1.21555 1.20837 1.22811 0.79871 0.99102 1.00716 0.90922 0.90789 0.92445 0.89226 0.90890 0.91059 0.91696 0.84636 0.84124 0.90665 0.90604 0.91497 0.90842 0.91431 0.92090 0.95313 0.93589 0.98249 0.93576 0.91530 0.88908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.18 37.16 0.34 -0.54 16 2 C -0.01 -0.09 3.26 -91.77 -0.30 -0.39 16 3 C -0.14 -1.30 9.18 37.16 0.34 -0.96 16 4 C 0.20 2.48 6.64 -155.43 -1.03 1.45 16 5 N -0.30 -4.57 12.36 32.70 0.40 -4.16 16 6 N -0.07 -1.26 13.43 60.35 0.81 -0.45 16 7 N -0.08 -1.33 13.29 60.35 0.80 -0.53 16 8 N -0.29 -3.72 2.83 -59.44 -0.17 -3.89 16 9 C 0.09 0.81 4.91 -5.19 -0.03 0.79 16 10 C 0.50 6.69 7.77 -10.99 -0.09 6.60 16 11 O -0.52 -9.85 15.84 5.56 0.09 -9.76 16 12 N -0.60 -7.56 2.97 -172.51 -0.51 -8.07 16 13 C 0.10 0.83 6.34 -3.71 -0.02 0.81 16 14 C -0.13 -1.28 6.08 -26.61 -0.16 -1.45 16 15 C -0.13 -1.92 5.13 -26.69 -0.14 -2.06 16 16 C 0.17 3.15 2.75 -67.58 -0.19 2.97 16 17 H 0.07 1.33 7.86 -51.93 -0.41 0.93 16 18 N -0.59 -13.95 2.82 -173.09 -0.49 -14.44 16 19 C 0.16 3.71 7.91 59.85 0.47 4.19 16 20 C -0.26 -6.98 9.60 -15.06 -0.14 -7.13 16 21 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 22 C 0.01 0.14 5.11 -17.43 -0.09 0.05 16 23 N -0.91 -25.92 10.63 55.49 0.59 -25.33 16 24 Si 0.91 21.78 29.57 -169.99 -5.03 16.75 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 28 C 0.10 1.70 5.81 -3.49 -0.02 1.68 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 0.56 6.85 -51.93 -0.36 0.20 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.14 0.57 6.93 -51.93 -0.36 0.21 16 37 H 0.14 0.89 7.69 -51.93 -0.40 0.49 16 38 H 0.08 0.33 5.94 -51.93 -0.31 0.02 16 39 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.06 0.86 6.72 -51.93 -0.35 0.52 16 44 H 0.03 0.73 7.41 -51.93 -0.39 0.34 16 45 H 0.05 1.16 7.20 -51.93 -0.37 0.78 16 46 H 0.00 -0.02 6.46 -51.93 -0.34 -0.35 16 47 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 48 H 0.07 1.14 7.53 -51.93 -0.39 0.75 16 49 H 0.09 1.99 7.00 -51.92 -0.36 1.63 16 LS Contribution 389.85 15.07 5.88 5.88 Total: -1.00 -35.46 389.85 -6.48 -41.94 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -7.80 Total: -3.95 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: -1.05 Total: 6.01 kcal Atomic # 7 Polarization: -58.31 SS G_CDS: 1.44 Total: -56.87 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.46 -6.48 -41.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027608412.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.822 kcal (2) G-P(sol) polarization free energy of solvation -35.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds