Wall clock time and date at job start Tue Mar 31 2020 19:49:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47473 * 2 1 4 4 C 1.50703 * 109.46971 * 119.99854 * 2 1 3 5 5 N 1.31074 * 126.65814 * 300.04492 * 4 2 1 6 6 N 1.28843 * 107.99024 * 179.97438 * 5 4 2 7 7 N 1.28740 * 109.39409 * 359.73037 * 6 5 4 8 8 N 1.29009 * 108.81060 * 0.43865 * 7 6 5 9 9 C 1.46501 * 126.43909 * 179.83348 * 8 7 6 10 10 C 1.50697 * 109.47362 * 269.69129 * 9 8 7 11 11 O 1.21279 * 120.00001 * 0.02562 * 10 9 8 12 12 N 1.34780 * 120.00105 * 180.27128 * 10 9 8 13 13 C 1.46926 * 120.63144 * 359.73307 * 12 10 9 14 14 C 1.53193 * 108.77267 * 233.58150 * 13 12 10 15 15 C 1.53037 * 109.31513 * 305.36471 * 14 13 12 16 16 C 1.53043 * 109.53730 * 61.36006 * 15 14 13 17 17 H 1.09000 * 109.49653 * 58.59435 * 16 15 14 18 18 N 1.46506 * 109.49431 * 178.65191 * 16 15 14 19 19 C 1.46497 * 120.00148 * 60.00498 * 18 16 15 20 20 C 1.36941 * 119.99777 * 240.00135 * 18 16 15 21 21 H 1.07991 * 120.00075 * 22.07743 * 20 18 16 22 22 C 1.38819 * 119.99765 * 202.06786 * 20 18 16 23 23 N 1.31623 * 119.99498 * 12.40865 * 22 20 18 24 24 Si 1.86792 * 120.00157 * 192.40421 * 22 20 18 25 25 H 1.48509 * 109.47042 * 60.00148 * 24 22 20 26 26 H 1.48495 * 109.47333 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47033 * 300.00590 * 24 22 20 28 28 C 1.46926 * 120.63027 * 179.44357 * 12 10 9 29 29 H 1.09000 * 109.47329 * 300.00612 * 1 2 3 30 30 H 1.09002 * 109.47074 * 60.00308 * 1 2 3 31 31 H 1.08999 * 109.47598 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47329 * 239.99388 * 2 1 3 33 33 H 1.09002 * 109.46719 * 299.99909 * 3 2 1 34 34 H 1.09000 * 109.47343 * 59.99397 * 3 2 1 35 35 H 1.08991 * 109.47482 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.47019 * 149.69079 * 9 8 7 37 37 H 1.08998 * 109.47084 * 29.69471 * 9 8 7 38 38 H 1.08997 * 109.58478 * 353.36711 * 13 12 10 39 39 H 1.09000 * 109.59000 * 113.79422 * 13 12 10 40 40 H 1.09008 * 109.49938 * 65.31129 * 14 13 12 41 41 H 1.09001 * 109.49803 * 185.40911 * 14 13 12 42 42 H 1.08998 * 109.46489 * 181.38632 * 15 14 13 43 43 H 1.09002 * 109.45613 * 301.36300 * 15 14 13 44 44 H 1.08998 * 109.47104 * 94.30045 * 19 18 16 45 45 H 1.08996 * 109.47687 * 214.30571 * 19 18 16 46 46 H 1.09007 * 109.46702 * 334.30845 * 19 18 16 47 47 H 0.97001 * 119.99175 * 179.97438 * 23 22 20 48 48 H 1.08995 * 109.59391 * 246.20672 * 28 12 10 49 49 H 1.09008 * 109.58312 * 6.63481 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7967 -0.3787 2.4765 6 7 2.3978 -1.2292 3.2351 7 7 3.0060 -2.0981 2.5053 8 7 2.8092 -1.8090 1.2635 9 6 3.3287 -2.5423 0.1065 10 6 4.6668 -1.9733 -0.2895 11 8 5.1402 -1.0468 0.3337 12 7 5.3352 -2.4908 -1.3392 13 6 4.7749 -3.6134 -2.1037 14 6 5.8140 -4.7376 -2.1617 15 6 7.1256 -4.1861 -2.7251 16 6 7.6558 -3.0853 -1.8034 17 1 7.8090 -3.4908 -0.8033 18 7 8.9277 -2.5802 -2.3264 19 6 8.9842 -1.9806 -3.6618 20 6 10.0637 -2.6685 -1.5669 21 1 10.1262 -3.3963 -0.7714 22 6 11.1350 -1.8227 -1.8195 23 7 10.9801 -0.7834 -2.6123 24 14 12.7962 -2.1593 -1.0345 25 1 13.2847 -3.4947 -1.4629 26 1 13.7650 -1.1174 -1.4599 27 1 12.6594 -2.1333 0.4440 28 6 6.6350 -1.9388 -1.7448 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.6767 1.9562 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.1299 1.4424 0.0005 36 1 2.6324 -2.4468 -0.7267 37 1 3.4436 -3.5948 0.3651 38 1 3.8719 -3.9755 -1.6123 39 1 4.5361 -3.2840 -3.1149 40 1 5.9846 -5.1276 -1.1582 41 1 5.4490 -5.5375 -2.8061 42 1 7.8592 -4.9896 -2.7905 43 1 6.9491 -3.7737 -3.7185 44 1 8.8747 -0.8993 -3.5795 45 1 9.9427 -2.2146 -4.1250 46 1 8.1769 -2.3818 -4.2747 47 1 11.7287 -0.1922 -2.7885 48 1 6.5449 -1.4756 -2.7273 49 1 6.9597 -1.1956 -1.0165 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027608412.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:11 Heat of formation + Delta-G solvation = 81.598095 kcal Electronic energy + Delta-G solvation = -30381.143710 eV Core-core repulsion = 26380.928269 eV Total energy + Delta-G solvation = -4000.215440 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -45.30747 -41.42213 -39.09925 -37.17355 -36.86295 -36.46451 -34.10870 -32.85192 -32.57735 -31.15648 -29.65144 -28.11846 -28.07292 -26.40873 -25.49582 -25.37986 -24.25145 -23.09003 -21.90273 -21.23045 -20.13082 -19.11656 -18.83260 -18.49418 -17.59305 -17.09024 -16.92402 -16.62024 -16.30119 -15.71434 -15.61225 -15.34127 -15.25547 -14.82159 -14.56804 -14.41016 -14.20492 -14.14306 -13.87324 -13.69485 -13.54280 -13.21665 -13.10027 -12.96707 -12.82682 -12.69883 -12.52637 -12.46872 -12.31298 -12.28656 -12.23838 -12.20615 -12.07780 -11.90409 -11.78520 -11.67225 -11.40351 -11.18972 -10.91622 -10.67614 -9.81093 -8.80164 -7.88264 -5.35706 0.07393 0.83313 1.12277 1.28672 1.41746 1.43141 1.49786 1.82955 2.46400 2.86769 3.11494 3.13723 3.25336 3.56770 3.60131 3.80407 3.98815 4.01009 4.04789 4.04819 4.13300 4.17646 4.21383 4.36309 4.37948 4.60980 4.62895 4.67703 4.76388 4.79930 4.80973 4.85615 4.91579 4.92660 4.95229 5.03647 5.13928 5.19898 5.26250 5.26866 5.37180 5.41285 5.44623 5.57792 5.58902 5.71532 6.24500 6.28680 6.89443 7.11179 7.47221 7.83751 8.23884 9.13801 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015271 B = 0.002893 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1833.105720 B = 9677.303630 C =10111.914423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.011 4.011 3 C -0.144 4.144 4 C 0.208 3.792 5 N -0.329 5.329 6 N -0.108 5.108 7 N -0.105 5.105 8 N -0.292 5.292 9 C 0.092 3.908 10 C 0.492 3.508 11 O -0.587 6.587 12 N -0.591 5.591 13 C 0.094 3.906 14 C -0.126 4.126 15 C -0.124 4.124 16 C 0.165 3.835 17 H 0.039 0.961 18 N -0.609 5.609 19 C 0.180 3.820 20 C -0.268 4.268 21 H 0.064 0.936 22 C -0.050 4.050 23 N -0.935 5.935 24 Si 0.965 3.035 25 H -0.274 1.274 26 H -0.292 1.292 27 H -0.283 1.283 28 C 0.116 3.884 29 H 0.054 0.946 30 H 0.101 0.899 31 H 0.069 0.931 32 H 0.123 0.877 33 H 0.103 0.897 34 H 0.057 0.943 35 H 0.031 0.969 36 H 0.198 0.802 37 H 0.177 0.823 38 H 0.130 0.870 39 H 0.102 0.898 40 H 0.061 0.939 41 H 0.114 0.886 42 H 0.052 0.948 43 H 0.068 0.932 44 H -0.002 1.002 45 H 0.016 0.984 46 H 0.041 0.959 47 H 0.248 0.752 48 H 0.070 0.930 49 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.496 -7.328 -5.841 27.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.032 4.032 3 C -0.202 4.202 4 C -0.070 4.070 5 N -0.178 5.178 6 N -0.102 5.102 7 N -0.091 5.091 8 N -0.093 5.093 9 C -0.031 4.031 10 C 0.279 3.721 11 O -0.466 6.466 12 N -0.323 5.323 13 C -0.026 4.026 14 C -0.164 4.164 15 C -0.164 4.164 16 C 0.057 3.943 17 H 0.058 0.942 18 N -0.332 5.332 19 C 0.035 3.965 20 C -0.398 4.398 21 H 0.082 0.918 22 C -0.246 4.246 23 N -0.581 5.581 24 Si 0.794 3.206 25 H -0.199 1.199 26 H -0.218 1.218 27 H -0.209 1.209 28 C -0.009 4.009 29 H 0.073 0.927 30 H 0.119 0.881 31 H 0.088 0.912 32 H 0.140 0.860 33 H 0.122 0.878 34 H 0.076 0.924 35 H 0.050 0.950 36 H 0.215 0.785 37 H 0.194 0.806 38 H 0.148 0.852 39 H 0.120 0.880 40 H 0.080 0.920 41 H 0.132 0.868 42 H 0.071 0.929 43 H 0.087 0.913 44 H 0.016 0.984 45 H 0.035 0.965 46 H 0.059 0.941 47 H 0.058 0.942 48 H 0.088 0.912 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -24.985 -6.922 -4.150 26.256 hybrid contribution 2.177 0.519 0.002 2.238 sum -22.808 -6.403 -4.148 24.050 Atomic orbital electron populations 1.21843 0.89887 1.03591 1.04195 1.20136 0.98764 0.95650 0.88688 1.21829 1.00022 0.94120 1.04225 1.26835 0.93560 0.88210 0.98352 1.74842 1.21773 1.21397 0.99808 1.78549 1.08114 0.99829 1.23684 1.78779 1.19256 1.22389 0.88713 1.48145 1.33244 1.21150 1.06771 1.22620 0.94555 0.99284 0.86649 1.21021 0.87473 0.83247 0.80378 1.90831 1.70026 1.31507 1.54273 1.48265 1.19726 1.34632 1.29692 1.22381 0.97330 0.84619 0.98243 1.21922 0.93777 0.98320 1.02406 1.21944 0.97673 0.97416 0.99320 1.20912 0.84448 0.92761 0.96173 0.94247 1.44163 1.03817 1.70779 1.14414 1.20504 0.97058 0.94635 0.84309 1.19479 0.93089 1.13205 1.14041 0.91795 1.25746 1.02489 0.95619 1.00706 1.70217 1.30895 1.15357 1.41677 0.85372 0.79913 0.77314 0.78038 1.19928 1.21825 1.20905 1.22115 0.82402 0.97260 0.99169 0.92681 0.88069 0.91185 0.85957 0.87834 0.92411 0.95013 0.78521 0.80611 0.85200 0.88002 0.92014 0.86811 0.92935 0.91296 0.98412 0.96531 0.94065 0.94232 0.91225 0.94338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.18 71.98 0.66 -0.52 16 2 C -0.01 -0.15 3.26 -11.54 -0.04 -0.18 16 3 C -0.14 -2.42 9.18 71.98 0.66 -1.76 16 4 C 0.21 4.82 6.64 138.13 0.92 5.74 16 5 N -0.33 -10.06 12.36 -50.45 -0.62 -10.69 16 6 N -0.11 -3.72 13.43 37.01 0.50 -3.23 16 7 N -0.11 -3.28 13.29 37.02 0.49 -2.78 16 8 N -0.29 -6.78 2.83 -341.98 -0.97 -7.75 16 9 C 0.09 1.19 4.91 85.63 0.42 1.61 16 10 C 0.49 12.26 7.77 87.66 0.68 12.94 16 11 O -0.59 -22.92 15.84 -3.03 -0.05 -22.97 16 12 N -0.59 -13.37 2.97 -818.08 -2.43 -15.80 16 13 C 0.09 0.95 6.34 86.36 0.55 1.50 16 14 C -0.13 -1.81 6.08 30.67 0.19 -1.62 16 15 C -0.12 -3.25 5.13 30.62 0.16 -3.09 16 16 C 0.16 6.21 2.75 45.21 0.12 6.34 16 17 H 0.04 1.66 7.86 -2.39 -0.02 1.64 16 18 N -0.61 -29.68 2.82 -701.53 -1.98 -31.66 16 19 C 0.18 8.46 7.91 127.77 1.01 9.47 16 20 C -0.27 -14.92 9.60 84.03 0.81 -14.12 16 21 H 0.06 3.52 7.81 -2.92 -0.02 3.50 16 22 C -0.05 -2.86 5.11 84.86 0.43 -2.43 16 23 N -0.94 -55.86 10.63 21.65 0.23 -55.63 16 24 Si 0.97 46.17 29.57 68.60 2.03 48.20 16 25 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 26 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 27 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 28 C 0.12 4.03 5.81 86.51 0.50 4.54 16 29 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.12 0.86 6.85 -2.39 -0.02 0.84 16 33 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.20 0.10 6.93 -2.39 -0.02 0.08 16 37 H 0.18 1.12 7.69 -2.39 -0.02 1.11 16 38 H 0.13 0.00 5.94 -2.39 -0.01 -0.01 16 39 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.06 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.07 1.70 6.72 -2.39 -0.02 1.69 16 44 H 0.00 -0.13 7.41 -2.39 -0.02 -0.15 16 45 H 0.02 0.84 7.20 -2.39 -0.02 0.82 16 46 H 0.04 1.55 6.46 -2.38 -0.02 1.54 16 47 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 48 H 0.07 2.37 7.53 -2.39 -0.02 2.35 16 49 H 0.04 1.76 7.00 -2.38 -0.02 1.74 16 Total: -1.00 -89.68 389.85 5.22 -84.46 By element: Atomic # 1 Polarization: -1.51 SS G_CDS: 0.95 Total: -0.56 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: 7.07 Total: 18.41 kcal Atomic # 7 Polarization: -122.76 SS G_CDS: -4.78 Total: -127.54 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.05 Total: -22.97 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -89.68 5.22 -84.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027608412.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.055 kcal (2) G-P(sol) polarization free energy of solvation -89.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds