Wall clock time and date at job start Tue Mar 31 2020 20:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47098 * 2 1 4 4 C 1.52997 * 109.46847 * 240.00160 * 2 1 3 5 5 N 1.46504 * 109.46971 * 120.00176 * 2 1 3 6 6 N 1.28720 * 125.32110 * 0.02562 * 5 2 1 7 7 N 1.28976 * 108.98541 * 179.97438 * 6 5 2 8 8 C 1.34184 * 107.25592 * 0.02562 * 7 6 5 9 9 C 1.48008 * 126.70032 * 179.97438 * 8 7 6 10 10 O 1.21541 * 119.99758 * 180.02562 * 9 8 7 11 11 N 1.34775 * 119.99639 * 0.02562 * 9 8 7 12 12 C 1.46502 * 119.99355 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.36179 * 324.72510 * 12 11 9 14 14 C 1.54843 * 109.35442 * 205.00225 * 12 11 9 15 15 C 1.50133 * 110.81433 * 200.92630 * 14 12 11 16 16 C 1.52537 * 105.40949 * 97.68395 * 15 14 12 17 17 C 1.46233 * 114.27505 * 270.59104 * 16 15 14 18 18 N 1.50169 * 107.53454 * 58.41356 * 17 16 15 19 19 C 1.36931 * 120.53924 * 109.56355 * 18 17 16 20 20 H 1.07996 * 120.00359 * 172.85102 * 19 18 17 21 21 C 1.38816 * 119.99720 * 352.84565 * 19 18 17 22 22 N 1.31610 * 120.00352 * 319.29691 * 21 19 18 23 23 Si 1.86800 * 119.99557 * 139.29630 * 21 19 18 24 24 H 1.48502 * 109.46986 * 269.99911 * 23 21 19 25 25 H 1.48503 * 109.47198 * 150.00437 * 23 21 19 26 26 H 1.48497 * 109.47483 * 30.00376 * 23 21 19 27 27 C 1.43437 * 118.92249 * 289.84046 * 18 17 16 28 28 N 1.28863 * 125.31450 * 180.25481 * 5 2 1 29 29 H 1.09002 * 109.46992 * 300.00253 * 1 2 3 30 30 H 1.09002 * 109.47130 * 59.99696 * 1 2 3 31 31 H 1.08996 * 109.47428 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47355 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47378 * 300.00152 * 3 2 1 34 34 H 1.09002 * 109.47406 * 60.00000 * 3 2 1 35 35 H 1.08995 * 109.47229 * 299.99695 * 4 2 1 36 36 H 1.09002 * 109.47138 * 60.00149 * 4 2 1 37 37 H 1.08996 * 109.46963 * 180.02562 * 4 2 1 38 38 H 0.96995 * 120.00714 * 0.02562 * 11 9 8 39 39 H 1.08998 * 109.21360 * 80.58613 * 14 12 11 40 40 H 1.09001 * 109.21273 * 321.27253 * 14 12 11 41 41 H 1.09000 * 110.25000 * 338.71443 * 15 14 12 42 42 H 1.08998 * 110.37335 * 216.71650 * 15 14 12 43 43 H 1.09000 * 108.51819 * 149.35268 * 16 15 14 44 44 H 1.08999 * 108.40112 * 31.74896 * 16 15 14 45 45 H 1.09001 * 109.84973 * 298.90574 * 17 16 15 46 46 H 1.08998 * 109.89795 * 177.95093 * 17 16 15 47 47 H 0.97004 * 120.00139 * 353.65946 * 22 21 19 48 48 H 1.09002 * 108.15737 * 213.02764 * 27 18 17 49 49 H 1.08996 * 108.16255 * 329.59359 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6907 1.1962 6 7 1.2762 -1.2170 2.1068 7 7 2.0308 -1.7403 3.0124 8 6 3.3029 -1.5262 2.6431 9 6 4.5190 -1.9476 3.3740 10 8 5.6183 -1.6873 2.9256 11 7 4.4073 -2.6200 4.5367 12 6 5.6111 -3.0366 5.2603 13 1 6.3872 -3.3077 4.5447 14 6 5.2789 -4.2625 6.1461 15 6 6.2834 -4.4094 7.2521 16 6 5.6375 -3.7651 8.4746 17 6 5.9104 -2.3354 8.6154 18 7 5.4124 -1.6551 7.3727 19 6 4.3066 -0.8487 7.4165 20 1 4.0231 -0.2733 6.5477 21 6 3.5498 -0.7710 8.5777 22 7 3.3036 -1.8586 9.2768 23 14 2.8810 0.8773 9.1479 24 1 3.8693 1.5292 10.0442 25 1 1.6084 0.6673 9.8839 26 1 2.6334 1.7457 7.9690 27 6 6.1104 -1.8685 6.1379 28 7 3.2580 -0.8626 1.5032 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7488 -1.2493 36 1 1.6766 -0.2073 -2.1392 37 1 3.1299 -0.7216 -1.2490 38 1 3.5300 -2.8281 4.8944 39 1 5.2884 -5.1624 5.5313 40 1 4.2862 -4.1345 6.5779 41 1 7.2063 -3.8895 6.9950 42 1 6.4856 -5.4632 7.4436 43 1 5.9989 -4.2762 9.3669 44 1 4.5588 -3.9069 8.4087 45 1 6.9828 -2.1721 8.7222 46 1 5.3878 -1.9421 9.4873 47 1 3.5711 -2.7260 8.9347 48 1 6.0441 -0.9544 5.5479 49 1 7.1616 -2.0427 6.3675 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034219494.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:30 Heat of formation + Delta-G solvation = 123.412712 kcal Electronic energy + Delta-G solvation = -30623.069775 eV Core-core repulsion = 26624.667552 eV Total energy + Delta-G solvation = -3998.402223 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -44.36658 -39.55294 -38.06368 -37.69791 -34.56537 -33.53355 -33.24015 -32.48109 -31.09597 -30.00625 -28.03971 -27.99162 -26.33666 -25.21801 -24.48163 -23.92250 -22.70056 -20.98374 -20.69633 -20.04989 -19.28467 -17.81616 -17.37055 -17.06615 -16.80300 -15.79493 -15.21544 -14.84948 -14.65819 -14.56643 -14.32773 -14.02636 -13.76815 -13.60292 -13.46584 -13.30080 -12.92983 -12.79843 -12.68338 -12.41054 -12.28589 -12.23720 -12.12674 -11.92698 -11.82241 -11.53636 -11.06259 -11.00184 -10.95992 -10.86201 -10.54320 -10.42652 -10.28234 -10.16895 -10.03914 -9.93085 -9.77818 -9.69635 -9.43212 -8.77751 -8.12329 -6.94035 -6.12909 -2.98271 1.08786 1.62317 1.63872 3.10075 3.41384 3.57250 3.59817 3.75943 3.83471 4.08965 4.18393 4.25523 4.64612 4.65174 4.97625 4.98989 5.02094 5.15634 5.16995 5.20005 5.21256 5.22052 5.33166 5.37191 5.42889 5.51449 5.61046 5.65850 5.71545 5.82525 5.93746 5.98042 6.00675 6.09814 6.25522 6.33883 6.37643 6.61186 6.67895 6.69777 6.86545 6.91277 6.99275 7.26288 7.28185 7.78644 8.05350 8.26808 8.44819 8.57673 9.11665 9.89127 10.32479 11.17479 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.012901 B = 0.003567 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.867744 B = 7847.086043 C = 9220.906569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.177 3.823 3 C -0.161 4.161 4 C -0.159 4.159 5 N -0.130 5.130 6 N -0.059 5.059 7 N -0.250 5.250 8 C 0.134 3.866 9 C 0.612 3.388 10 O -0.525 6.525 11 N -0.676 5.676 12 C 0.114 3.886 13 H 0.080 0.920 14 C -0.112 4.112 15 C -0.110 4.110 16 C -0.136 4.136 17 C 0.129 3.871 18 N -0.586 5.586 19 C -0.352 4.352 20 H 0.063 0.937 21 C -0.013 4.013 22 N -0.901 5.901 23 Si 1.037 2.963 24 H -0.295 1.295 25 H -0.293 1.293 26 H -0.295 1.295 27 C 0.152 3.848 28 N -0.251 5.251 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.410 0.590 39 H 0.047 0.953 40 H 0.074 0.926 41 H 0.065 0.935 42 H 0.056 0.944 43 H 0.040 0.960 44 H 0.072 0.928 45 H 0.024 0.976 46 H 0.095 0.905 47 H 0.274 0.726 48 H 0.042 0.958 49 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.702 -0.425 -18.085 18.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.097 3.903 3 C -0.219 4.219 4 C -0.218 4.218 5 N -0.045 5.045 6 N -0.051 5.051 7 N -0.124 5.124 8 C -0.150 4.150 9 C 0.391 3.609 10 O -0.399 6.399 11 N -0.326 5.326 12 C 0.007 3.993 13 H 0.098 0.902 14 C -0.150 4.150 15 C -0.148 4.148 16 C -0.175 4.175 17 C 0.005 3.995 18 N -0.307 5.307 19 C -0.480 4.480 20 H 0.081 0.919 21 C -0.215 4.215 22 N -0.543 5.543 23 Si 0.868 3.132 24 H -0.222 1.222 25 H -0.220 1.220 26 H -0.222 1.222 27 C 0.021 3.979 28 N -0.104 5.104 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.246 0.754 39 H 0.066 0.934 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.059 0.941 44 H 0.090 0.910 45 H 0.042 0.958 46 H 0.113 0.887 47 H 0.087 0.913 48 H 0.060 0.940 49 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.358 0.638 -17.284 17.619 hybrid contribution 0.644 -0.866 -1.076 1.524 sum -2.715 -0.228 -18.360 18.561 Atomic orbital electron populations 1.22103 0.89895 1.04694 1.04418 1.21459 0.96562 0.92869 0.79446 1.22263 1.03567 0.91951 1.04166 1.22246 1.03506 1.01047 0.94963 1.50708 1.01078 1.34594 1.18078 1.78877 1.21736 1.09003 0.95532 1.76199 1.00219 1.17381 1.18642 1.25483 0.94742 1.01655 0.93115 1.16075 0.84411 0.79367 0.81049 1.90798 1.25209 1.55700 1.68147 1.45764 1.11724 1.54684 1.20413 1.22970 0.85718 0.97136 0.93512 0.90215 1.21680 1.00935 0.95557 0.96870 1.20944 0.98428 0.99480 0.95905 1.21106 1.01785 0.98481 0.96168 1.20605 0.96344 0.90608 0.91924 1.44408 1.31073 1.53965 1.01258 1.19908 1.06311 1.20136 1.01634 0.91873 1.25348 0.97108 1.03118 0.95973 1.70832 1.40541 0.98645 1.44277 0.83931 0.76100 0.77328 0.75870 1.22229 1.21995 1.22176 1.20644 0.94326 0.95025 0.87856 1.74956 1.02550 1.17266 1.15595 0.90391 0.89212 0.90522 0.90206 0.89081 0.91166 0.91353 0.89078 0.90251 0.75372 0.93403 0.90713 0.91678 0.92508 0.94149 0.90956 0.95760 0.88710 0.91320 0.93981 0.94027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 7.90 37.16 0.29 -0.72 16 2 C 0.18 1.55 1.30 -131.82 -0.17 1.38 16 3 C -0.16 -1.22 8.66 37.16 0.32 -0.90 16 4 C -0.16 -1.09 8.66 37.16 0.32 -0.77 16 5 N -0.13 -1.79 3.72 0.52 0.00 -1.79 16 6 N -0.06 -0.92 12.21 60.35 0.74 -0.19 16 7 N -0.25 -4.53 12.26 32.10 0.39 -4.13 16 8 C 0.13 2.48 8.14 -156.24 -1.27 1.21 16 9 C 0.61 12.03 7.65 -12.26 -0.09 11.93 16 10 O -0.52 -11.32 16.76 5.33 0.09 -11.23 16 11 N -0.68 -12.78 5.08 -53.04 -0.27 -13.05 16 12 C 0.11 2.10 2.90 -66.22 -0.19 1.91 16 13 H 0.08 1.42 7.58 -51.93 -0.39 1.03 16 14 C -0.11 -1.90 5.23 -27.19 -0.14 -2.05 16 15 C -0.11 -1.79 5.76 -28.39 -0.16 -1.96 16 16 C -0.14 -2.62 4.96 -30.18 -0.15 -2.77 16 17 C 0.13 2.86 5.22 -5.21 -0.03 2.84 16 18 N -0.59 -13.90 2.62 -175.41 -0.46 -14.36 16 19 C -0.35 -9.48 9.46 -15.06 -0.14 -9.62 16 20 H 0.06 1.81 8.05 -52.49 -0.42 1.38 16 21 C -0.01 -0.36 4.53 -17.43 -0.08 -0.43 16 22 N -0.90 -25.45 11.99 55.49 0.67 -24.78 16 23 Si 1.04 25.31 30.05 -169.99 -5.11 20.20 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 26 H -0.30 -7.09 7.11 56.52 0.40 -6.69 16 27 C 0.15 3.21 4.74 -4.93 -0.02 3.19 16 28 N -0.25 -4.17 11.85 32.11 0.38 -3.79 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.41 7.82 8.19 -40.82 -0.33 7.48 16 39 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 1.44 6.58 -51.93 -0.34 1.09 16 41 H 0.06 1.05 6.28 -51.93 -0.33 0.73 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 1.57 4.65 -51.93 -0.24 1.33 16 45 H 0.02 0.50 8.13 -51.93 -0.42 0.08 16 46 H 0.09 2.40 5.61 -51.93 -0.29 2.11 16 47 H 0.27 7.48 4.95 -40.82 -0.20 7.28 16 48 H 0.04 0.99 7.81 -51.93 -0.41 0.58 16 49 H 0.04 0.82 6.89 -51.93 -0.36 0.46 16 LS Contribution 385.40 15.07 5.81 5.81 Total: -1.00 -32.06 385.40 -6.89 -38.95 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: -7.61 Total: 5.13 kcal Atomic # 6 Polarization: 4.75 SS G_CDS: -1.52 Total: 3.23 kcal Atomic # 7 Polarization: -63.54 SS G_CDS: 1.45 Total: -62.09 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.23 kcal Atomic # 14 Polarization: 25.31 SS G_CDS: -5.11 Total: 20.20 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.06 -6.89 -38.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034219494.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.365 kcal (2) G-P(sol) polarization free energy of solvation -32.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 123.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds