Wall clock time and date at job start Tue Mar 31 2020 20:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47098 * 2 1 4 4 C 1.52997 * 109.46847 * 240.00160 * 2 1 3 5 5 N 1.46504 * 109.46971 * 120.00176 * 2 1 3 6 6 N 1.28720 * 125.32110 * 0.02562 * 5 2 1 7 7 N 1.28976 * 108.98541 * 179.97438 * 6 5 2 8 8 C 1.34184 * 107.25592 * 0.02562 * 7 6 5 9 9 C 1.48008 * 126.70032 * 179.97438 * 8 7 6 10 10 O 1.21541 * 119.99758 * 180.02562 * 9 8 7 11 11 N 1.34775 * 119.99639 * 0.02562 * 9 8 7 12 12 C 1.46502 * 119.99355 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.36179 * 324.72510 * 12 11 9 14 14 C 1.54843 * 109.35442 * 205.00225 * 12 11 9 15 15 C 1.50133 * 110.81433 * 200.92630 * 14 12 11 16 16 C 1.52537 * 105.40949 * 97.68395 * 15 14 12 17 17 C 1.46233 * 114.27505 * 270.59104 * 16 15 14 18 18 N 1.50169 * 107.53454 * 58.41356 * 17 16 15 19 19 C 1.36931 * 120.53924 * 109.56355 * 18 17 16 20 20 H 1.07996 * 120.00359 * 172.85102 * 19 18 17 21 21 C 1.38816 * 119.99720 * 352.84565 * 19 18 17 22 22 N 1.31610 * 120.00352 * 319.29691 * 21 19 18 23 23 Si 1.86800 * 119.99557 * 139.29630 * 21 19 18 24 24 H 1.48502 * 109.46986 * 269.99911 * 23 21 19 25 25 H 1.48503 * 109.47198 * 150.00437 * 23 21 19 26 26 H 1.48497 * 109.47483 * 30.00376 * 23 21 19 27 27 C 1.43437 * 118.92249 * 289.84046 * 18 17 16 28 28 N 1.28863 * 125.31450 * 180.25481 * 5 2 1 29 29 H 1.09002 * 109.46992 * 300.00253 * 1 2 3 30 30 H 1.09002 * 109.47130 * 59.99696 * 1 2 3 31 31 H 1.08996 * 109.47428 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47355 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47378 * 300.00152 * 3 2 1 34 34 H 1.09002 * 109.47406 * 60.00000 * 3 2 1 35 35 H 1.08995 * 109.47229 * 299.99695 * 4 2 1 36 36 H 1.09002 * 109.47138 * 60.00149 * 4 2 1 37 37 H 1.08996 * 109.46963 * 180.02562 * 4 2 1 38 38 H 0.96995 * 120.00714 * 0.02562 * 11 9 8 39 39 H 1.08998 * 109.21360 * 80.58613 * 14 12 11 40 40 H 1.09001 * 109.21273 * 321.27253 * 14 12 11 41 41 H 1.09000 * 110.25000 * 338.71443 * 15 14 12 42 42 H 1.08998 * 110.37335 * 216.71650 * 15 14 12 43 43 H 1.09000 * 108.51819 * 149.35268 * 16 15 14 44 44 H 1.08999 * 108.40112 * 31.74896 * 16 15 14 45 45 H 1.09001 * 109.84973 * 298.90574 * 17 16 15 46 46 H 1.08998 * 109.89795 * 177.95093 * 17 16 15 47 47 H 0.97004 * 120.00139 * 353.65946 * 22 21 19 48 48 H 1.09002 * 108.15737 * 213.02764 * 27 18 17 49 49 H 1.08996 * 108.16255 * 329.59359 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 2.0184 -0.6907 1.1962 6 7 1.2762 -1.2170 2.1068 7 7 2.0308 -1.7403 3.0124 8 6 3.3029 -1.5262 2.6431 9 6 4.5190 -1.9476 3.3740 10 8 5.6183 -1.6873 2.9256 11 7 4.4073 -2.6200 4.5367 12 6 5.6111 -3.0366 5.2603 13 1 6.3872 -3.3077 4.5447 14 6 5.2789 -4.2625 6.1461 15 6 6.2834 -4.4094 7.2521 16 6 5.6375 -3.7651 8.4746 17 6 5.9104 -2.3354 8.6154 18 7 5.4124 -1.6551 7.3727 19 6 4.3066 -0.8487 7.4165 20 1 4.0231 -0.2733 6.5477 21 6 3.5498 -0.7710 8.5777 22 7 3.3036 -1.8586 9.2768 23 14 2.8810 0.8773 9.1479 24 1 3.8693 1.5292 10.0442 25 1 1.6084 0.6673 9.8839 26 1 2.6334 1.7457 7.9690 27 6 6.1104 -1.8685 6.1379 28 7 3.2580 -0.8626 1.5032 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7488 -1.2493 36 1 1.6766 -0.2073 -2.1392 37 1 3.1299 -0.7216 -1.2490 38 1 3.5300 -2.8281 4.8944 39 1 5.2884 -5.1624 5.5313 40 1 4.2862 -4.1345 6.5779 41 1 7.2063 -3.8895 6.9950 42 1 6.4856 -5.4632 7.4436 43 1 5.9989 -4.2762 9.3669 44 1 4.5588 -3.9069 8.4087 45 1 6.9828 -2.1721 8.7222 46 1 5.3878 -1.9421 9.4873 47 1 3.5711 -2.7260 8.9347 48 1 6.0441 -0.9544 5.5479 49 1 7.1616 -2.0427 6.3675 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034219494.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:29 Heat of formation + Delta-G solvation = 102.047397 kcal Electronic energy + Delta-G solvation = -30623.996244 eV Core-core repulsion = 26624.667552 eV Total energy + Delta-G solvation = -3999.328692 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -45.62833 -41.11659 -39.58326 -38.63864 -36.24191 -35.03335 -34.66105 -33.72688 -32.94598 -31.62527 -28.68444 -28.56767 -27.99750 -26.74563 -25.66479 -25.42279 -24.49190 -22.47663 -21.94041 -21.44553 -20.92200 -19.10645 -19.01825 -18.58273 -17.78086 -17.38889 -16.78193 -16.42516 -16.11826 -15.64015 -15.51340 -15.37557 -15.29660 -15.11818 -15.00680 -14.31681 -14.09574 -13.96968 -13.78930 -13.52305 -13.46540 -13.30951 -13.25542 -12.88482 -12.75954 -12.67680 -12.57367 -12.46145 -12.38293 -12.20978 -12.15040 -12.12715 -11.98090 -11.77455 -11.57346 -11.49808 -11.43705 -11.26389 -11.16200 -10.45435 -10.07657 -8.86854 -8.26730 -5.06843 -0.19685 0.23086 0.63744 1.58235 1.60106 1.70341 1.79693 1.91253 2.67200 2.79950 2.93979 3.13450 3.45525 3.46516 3.53651 3.60922 3.78800 3.96458 4.01424 4.22184 4.27660 4.37489 4.39177 4.43232 4.47932 4.49470 4.56012 4.57502 4.67933 4.69204 4.69784 4.74279 4.93505 4.98569 5.07829 5.07875 5.11457 5.14585 5.15522 5.18766 5.28737 5.40426 5.48751 5.52520 5.66153 5.92194 6.25302 6.51328 6.83132 7.01970 7.11464 7.87994 8.31321 9.06032 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.012901 B = 0.003567 C = 0.003036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2169.867744 B = 7847.086043 C = 9220.906569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.156 3.844 3 C -0.158 4.158 4 C -0.155 4.155 5 N -0.109 5.109 6 N -0.060 5.060 7 N -0.273 5.273 8 C 0.114 3.886 9 C 0.613 3.387 10 O -0.549 6.549 11 N -0.674 5.674 12 C 0.119 3.881 13 H 0.093 0.907 14 C -0.104 4.104 15 C -0.100 4.100 16 C -0.129 4.129 17 C 0.132 3.868 18 N -0.598 5.598 19 C -0.349 4.349 20 H 0.037 0.963 21 C -0.052 4.052 22 N -0.923 5.923 23 Si 1.078 2.922 24 H -0.288 1.288 25 H -0.296 1.296 26 H -0.292 1.292 27 C 0.154 3.846 28 N -0.256 5.256 29 H 0.064 0.936 30 H 0.131 0.869 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.134 0.866 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.132 0.868 37 H 0.063 0.937 38 H 0.409 0.591 39 H 0.076 0.924 40 H 0.049 0.951 41 H 0.072 0.928 42 H 0.089 0.911 43 H 0.058 0.942 44 H 0.044 0.956 45 H 0.042 0.958 46 H 0.060 0.940 47 H 0.272 0.728 48 H 0.010 0.990 49 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.686 -0.711 -19.959 20.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.078 3.922 3 C -0.217 4.217 4 C -0.213 4.213 5 N -0.026 5.026 6 N -0.052 5.052 7 N -0.147 5.147 8 C -0.170 4.170 9 C 0.393 3.607 10 O -0.425 6.425 11 N -0.323 5.323 12 C 0.012 3.988 13 H 0.111 0.889 14 C -0.142 4.142 15 C -0.138 4.138 16 C -0.168 4.168 17 C 0.008 3.992 18 N -0.320 5.320 19 C -0.478 4.478 20 H 0.055 0.945 21 C -0.252 4.252 22 N -0.566 5.566 23 Si 0.906 3.094 24 H -0.215 1.215 25 H -0.223 1.223 26 H -0.219 1.219 27 C 0.025 3.975 28 N -0.110 5.110 29 H 0.084 0.916 30 H 0.149 0.851 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.152 0.848 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.151 0.849 37 H 0.082 0.918 38 H 0.244 0.756 39 H 0.095 0.905 40 H 0.067 0.933 41 H 0.091 0.909 42 H 0.108 0.892 43 H 0.076 0.924 44 H 0.063 0.937 45 H 0.060 0.940 46 H 0.079 0.921 47 H 0.085 0.915 48 H 0.029 0.971 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.342 0.338 -19.163 19.455 hybrid contribution 0.620 -0.687 -0.639 1.125 sum -2.722 -0.349 -19.802 19.991 Atomic orbital electron populations 1.22185 0.87920 1.04829 1.05834 1.22284 0.98168 0.93383 0.78329 1.22324 1.02525 0.91213 1.05612 1.22299 1.02534 1.01160 0.95296 1.51387 1.00063 1.32807 1.18343 1.78789 1.21548 1.09185 0.95703 1.76156 1.00220 1.18498 1.19821 1.25259 0.94563 1.03168 0.94011 1.16222 0.84575 0.78837 0.81071 1.90765 1.26164 1.56698 1.68829 1.45796 1.11826 1.54412 1.20245 1.22886 0.85909 0.96546 0.93440 0.88890 1.21622 0.99756 0.95734 0.97105 1.20937 0.97927 1.01229 0.93704 1.20949 1.00363 0.96871 0.98657 1.20566 0.96548 0.92139 0.89899 1.44437 1.30247 1.54547 1.02756 1.19797 1.06956 1.20238 1.00808 0.94457 1.26144 0.97919 1.04668 0.96420 1.70863 1.41933 0.98936 1.44863 0.83350 0.75626 0.74840 0.75571 1.21468 1.22260 1.21870 1.20654 0.95175 0.94781 0.86932 1.74910 1.04018 1.17052 1.15028 0.91650 0.85073 0.91031 0.91859 0.84798 0.92524 0.91812 0.84931 0.91790 0.75575 0.90498 0.93269 0.90931 0.89217 0.92382 0.93725 0.94021 0.92129 0.91483 0.97125 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 7.90 71.98 0.57 -1.06 16 2 C 0.16 2.47 1.30 3.60 0.00 2.47 16 3 C -0.16 -2.11 8.66 71.98 0.62 -1.49 16 4 C -0.15 -1.75 8.66 71.98 0.62 -1.13 16 5 N -0.11 -2.99 3.72 -152.25 -0.57 -3.55 16 6 N -0.06 -1.91 12.21 37.02 0.45 -1.46 16 7 N -0.27 -10.18 12.26 -52.36 -0.64 -10.83 16 8 C 0.11 4.32 8.14 137.15 1.12 5.44 16 9 C 0.61 24.76 7.65 86.83 0.66 25.43 16 10 O -0.55 -24.15 16.76 -3.84 -0.06 -24.22 16 11 N -0.67 -26.04 5.08 -440.01 -2.24 -28.27 16 12 C 0.12 4.32 2.90 46.10 0.13 4.46 16 13 H 0.09 3.18 7.58 -2.39 -0.02 3.17 16 14 C -0.10 -3.36 5.23 30.30 0.16 -3.20 16 15 C -0.10 -3.00 5.76 29.52 0.17 -2.83 16 16 C -0.13 -4.84 4.96 28.36 0.14 -4.70 16 17 C 0.13 5.83 5.22 83.58 0.44 6.27 16 18 N -0.60 -28.75 2.62 -708.87 -1.86 -30.61 16 19 C -0.35 -19.34 9.46 84.04 0.80 -18.55 16 20 H 0.04 2.23 8.05 -2.91 -0.02 2.21 16 21 C -0.05 -2.91 4.53 84.86 0.38 -2.53 16 22 N -0.92 -53.24 11.99 21.65 0.26 -52.98 16 23 Si 1.08 52.33 30.05 68.60 2.06 54.40 16 24 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 25 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 26 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 27 C 0.15 6.52 4.74 87.42 0.41 6.94 16 28 N -0.26 -8.64 11.85 -52.31 -0.62 -9.26 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.13 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.13 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.41 16.14 8.19 -92.71 -0.76 15.38 16 39 H 0.08 2.06 8.14 -2.39 -0.02 2.05 16 40 H 0.05 1.88 6.58 -2.39 -0.02 1.86 16 41 H 0.07 2.10 6.28 -2.39 -0.02 2.09 16 42 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 43 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.04 1.95 4.65 -2.39 -0.01 1.93 16 45 H 0.04 1.67 8.13 -2.39 -0.02 1.65 16 46 H 0.06 3.11 5.61 -2.39 -0.01 3.10 16 47 H 0.27 15.30 4.95 -92.71 -0.46 14.84 16 48 H 0.01 0.51 7.81 -2.39 -0.02 0.49 16 49 H 0.06 2.31 6.89 -2.39 -0.02 2.29 16 Total: -1.00 -72.67 385.40 3.54 -69.13 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.52 Total: 22.16 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: 6.23 Total: 15.50 kcal Atomic # 7 Polarization: -131.75 SS G_CDS: -5.21 Total: -136.96 kcal Atomic # 8 Polarization: -24.15 SS G_CDS: -0.06 Total: -24.22 kcal Atomic # 14 Polarization: 52.33 SS G_CDS: 2.06 Total: 54.40 kcal Total: -72.67 3.54 -69.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034219494.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.173 kcal (2) G-P(sol) polarization free energy of solvation -72.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds