Wall clock time and date at job start Tue Mar 31 2020 20:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47294 * 2 1 4 4 C 1.53000 * 109.47203 * 239.99585 * 2 1 3 5 5 N 1.46505 * 109.47157 * 119.99666 * 2 1 3 6 6 N 1.28718 * 125.31619 * 0.02863 * 5 2 1 7 7 N 1.28987 * 108.98999 * 179.73565 * 6 5 2 8 8 C 1.34189 * 107.24798 * 359.97438 * 7 6 5 9 9 C 1.48000 * 126.69771 * 179.97438 * 8 7 6 10 10 O 1.21537 * 120.00301 * 179.97438 * 9 8 7 11 11 N 1.34777 * 120.00057 * 359.97438 * 9 8 7 12 12 C 1.46501 * 119.99782 * 179.97438 * 11 9 8 13 13 H 1.08995 * 109.36985 * 35.00389 * 12 11 9 14 14 C 1.50882 * 109.36454 * 154.74406 * 12 11 9 15 15 C 1.52719 * 109.27704 * 212.17868 * 14 12 11 16 16 C 1.47095 * 114.22776 * 274.83495 * 15 14 12 17 17 C 1.54864 * 110.32633 * 62.83097 * 16 15 14 18 18 N 1.44581 * 109.59890 * 288.73688 * 17 16 15 19 19 C 1.36934 * 118.64296 * 270.69842 * 18 17 16 20 20 H 1.08007 * 119.99777 * 26.52373 * 19 18 17 21 21 C 1.38810 * 120.00331 * 206.52456 * 19 18 17 22 22 N 1.31624 * 119.99792 * 15.66984 * 21 19 18 23 23 Si 1.86803 * 120.00266 * 195.67339 * 21 19 18 24 24 H 1.48500 * 109.47307 * 89.99623 * 23 21 19 25 25 H 1.48499 * 109.47052 * 209.99897 * 23 21 19 26 26 H 1.48496 * 109.47118 * 329.99962 * 23 21 19 27 27 C 1.47608 * 122.71308 * 90.72375 * 18 17 16 28 28 N 1.28864 * 125.32092 * 179.71879 * 5 2 1 29 29 H 1.08998 * 109.47093 * 300.00086 * 1 2 3 30 30 H 1.09002 * 109.46938 * 60.00574 * 1 2 3 31 31 H 1.09000 * 109.47219 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47612 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47133 * 299.99834 * 3 2 1 34 34 H 1.08997 * 109.47196 * 59.99383 * 3 2 1 35 35 H 1.08995 * 109.47498 * 300.00019 * 4 2 1 36 36 H 1.09003 * 109.46872 * 60.00381 * 4 2 1 37 37 H 1.09005 * 109.46724 * 180.02562 * 4 2 1 38 38 H 0.97000 * 119.99927 * 359.97438 * 11 9 8 39 39 H 1.08998 * 109.48965 * 332.04955 * 14 12 11 40 40 H 1.09005 * 109.48843 * 92.11635 * 14 12 11 41 41 H 1.08996 * 108.54350 * 153.62373 * 15 14 12 42 42 H 1.09000 * 108.58999 * 36.07197 * 15 14 12 43 43 H 1.08999 * 109.32616 * 302.56669 * 16 15 14 44 44 H 1.09004 * 109.19059 * 183.00519 * 16 15 14 45 45 H 1.08996 * 109.44987 * 168.69331 * 17 16 15 46 46 H 1.09003 * 109.44732 * 48.77174 * 17 16 15 47 47 H 0.96996 * 119.99839 * 180.02562 * 22 21 19 48 48 H 1.08999 * 108.94428 * 197.17845 * 27 18 17 49 49 H 1.08994 * 108.94358 * 78.55552 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1962 6 7 1.2761 -1.2168 2.1068 7 7 2.0306 -1.7445 3.0101 8 6 3.3028 -1.5342 2.6386 9 6 4.5188 -1.9612 3.3662 10 8 5.6181 -1.7049 2.9157 11 7 4.4071 -2.6344 4.5284 12 6 5.6108 -3.0576 5.2483 13 1 6.3904 -2.3064 5.1221 14 6 5.2907 -3.2045 6.7155 15 6 6.5269 -2.8505 7.5392 16 6 7.4666 -3.9663 7.7277 17 6 8.0340 -4.4282 6.3628 18 7 7.0008 -5.1063 5.6125 19 6 6.8521 -6.4579 5.7739 20 1 7.1552 -6.9280 6.6978 21 6 6.3119 -7.2239 4.7501 22 7 6.2288 -6.7306 3.5326 23 14 5.7029 -8.9549 5.1001 24 1 4.2694 -8.9069 5.4850 25 1 5.8609 -9.7908 3.8829 26 1 6.4941 -9.5429 6.2106 27 6 6.1000 -4.4018 4.6792 28 7 3.2580 -0.8710 1.4985 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6767 -1.7490 -1.2492 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7217 -1.2489 38 1 3.5298 -2.8387 4.8882 39 1 4.4743 -2.5320 6.9786 40 1 4.9957 -4.2334 6.9221 41 1 6.2021 -2.5022 8.5196 42 1 7.0532 -2.0350 7.0431 43 1 6.9475 -4.7987 8.2030 44 1 8.2866 -3.6401 8.3676 45 1 8.8687 -5.1094 6.5285 46 1 8.3802 -3.5604 5.8013 47 1 5.8509 -7.2658 2.8173 48 1 5.2366 -5.0349 4.4749 49 1 6.6312 -4.2184 3.7453 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034219496.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:35 Heat of formation + Delta-G solvation = 112.309786 kcal Electronic energy + Delta-G solvation = -30120.456412 eV Core-core repulsion = 26121.572731 eV Total energy + Delta-G solvation = -3998.883682 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -44.44417 -39.54117 -37.97474 -37.53194 -34.50517 -33.61884 -33.42428 -32.54582 -30.74184 -30.01530 -28.07761 -28.01872 -26.17527 -25.29034 -24.53719 -24.15437 -22.85175 -21.01240 -20.58787 -20.00606 -19.19724 -17.83740 -17.43885 -16.83275 -16.60394 -15.76139 -15.30994 -14.76052 -14.75052 -14.50291 -14.24561 -14.01473 -13.88955 -13.53165 -13.35681 -13.23790 -12.96788 -12.84961 -12.79446 -12.40346 -12.31931 -12.28530 -12.05954 -11.96438 -11.59386 -11.32142 -11.12204 -11.07306 -11.03597 -10.97353 -10.69685 -10.45072 -10.36805 -10.22650 -10.15437 -9.93683 -9.90167 -9.76134 -9.47198 -8.59990 -8.35142 -6.61763 -5.72600 -3.17720 1.02783 1.54063 1.57355 3.02552 3.37978 3.40687 3.47480 3.48573 3.77953 4.04943 4.12712 4.17687 4.52626 4.59511 4.93780 4.95229 4.98936 5.12253 5.17036 5.18531 5.23347 5.32193 5.37148 5.46342 5.49800 5.57294 5.63430 5.66416 5.72724 5.76513 5.93065 6.03038 6.04874 6.20377 6.36578 6.50468 6.61948 6.67676 6.69343 6.78022 6.89758 6.98892 7.14106 7.38307 7.73567 7.81200 7.87289 8.18814 8.40524 8.51433 9.27591 9.94737 10.39973 11.33648 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014126 B = 0.003018 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.737888 B = 9275.465982 C =10411.235058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.177 3.823 3 C -0.160 4.160 4 C -0.161 4.161 5 N -0.128 5.128 6 N -0.060 5.060 7 N -0.257 5.257 8 C 0.135 3.865 9 C 0.613 3.387 10 O -0.507 6.507 11 N -0.691 5.691 12 C 0.120 3.880 13 H 0.078 0.922 14 C -0.116 4.116 15 C -0.098 4.098 16 C -0.148 4.148 17 C 0.154 3.846 18 N -0.586 5.586 19 C -0.258 4.258 20 H 0.067 0.933 21 C 0.005 3.995 22 N -0.900 5.900 23 Si 0.900 3.100 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.279 1.279 27 C 0.173 3.827 28 N -0.247 5.247 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.405 0.595 39 H 0.053 0.947 40 H 0.084 0.916 41 H 0.045 0.955 42 H 0.050 0.950 43 H 0.061 0.939 44 H 0.047 0.953 45 H 0.046 0.954 46 H 0.033 0.967 47 H 0.253 0.747 48 H 0.079 0.921 49 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.555 16.523 -5.337 20.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.096 3.904 3 C -0.218 4.218 4 C -0.220 4.220 5 N -0.043 5.043 6 N -0.053 5.053 7 N -0.132 5.132 8 C -0.149 4.149 9 C 0.391 3.609 10 O -0.379 6.379 11 N -0.343 5.343 12 C 0.016 3.984 13 H 0.096 0.904 14 C -0.154 4.154 15 C -0.136 4.136 16 C -0.188 4.188 17 C 0.026 3.974 18 N -0.308 5.308 19 C -0.388 4.388 20 H 0.085 0.915 21 C -0.194 4.194 22 N -0.543 5.543 23 Si 0.730 3.270 24 H -0.215 1.215 25 H -0.219 1.219 26 H -0.204 1.204 27 C 0.047 3.953 28 N -0.100 5.100 29 H 0.095 0.905 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.098 0.902 33 H 0.110 0.890 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.241 0.759 39 H 0.072 0.928 40 H 0.102 0.898 41 H 0.064 0.936 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.051 0.949 47 H 0.063 0.937 48 H 0.097 0.903 49 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -11.375 16.715 -5.965 21.080 hybrid contribution -0.442 -1.132 0.294 1.251 sum -11.818 15.582 -5.671 20.363 Atomic orbital electron populations 1.22101 0.89902 1.04760 1.04301 1.21483 0.96524 0.92831 0.79521 1.22253 1.03615 0.91905 1.04046 1.22271 1.03709 1.01186 0.94823 1.50715 1.01068 1.34394 1.18137 1.78839 1.21749 1.08948 0.95719 1.76132 1.00258 1.17299 1.19483 1.25533 0.94646 1.01519 0.93237 1.16104 0.84451 0.79184 0.81132 1.90851 1.25134 1.55592 1.66282 1.45903 1.11307 1.55259 1.21805 1.21947 0.85211 1.00257 0.91001 0.90390 1.21322 0.97600 1.03072 0.93447 1.20247 0.96054 0.98687 0.98640 1.21510 0.98319 0.98237 1.00748 1.20749 0.90968 0.95383 0.90320 1.43523 1.33482 1.04362 1.49388 1.19200 1.38788 0.83053 0.97783 0.91534 1.25065 1.01933 0.97705 0.94731 1.70090 1.47831 1.37086 0.99343 0.86333 0.78960 0.84601 0.77128 1.21495 1.21867 1.20446 1.21338 0.95049 0.88084 0.90877 1.74999 1.02442 1.17297 1.15219 0.90543 0.89170 0.90461 0.90156 0.89040 0.91345 0.91190 0.89040 0.90084 0.75947 0.92801 0.89785 0.93587 0.93161 0.92014 0.93429 0.93512 0.94865 0.93714 0.90261 0.94845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 7.90 37.16 0.29 -0.58 16 2 C 0.18 1.41 1.30 -131.82 -0.17 1.24 16 3 C -0.16 -1.01 8.66 37.16 0.32 -0.69 16 4 C -0.16 -1.14 8.66 37.16 0.32 -0.81 16 5 N -0.13 -1.64 3.72 0.52 0.00 -1.64 16 6 N -0.06 -0.85 12.21 60.35 0.74 -0.11 16 7 N -0.26 -4.15 12.26 32.10 0.39 -3.76 16 8 C 0.14 2.34 8.14 -156.24 -1.27 1.07 16 9 C 0.61 11.81 7.80 -12.26 -0.10 11.71 16 10 O -0.51 -11.36 16.76 5.33 0.09 -11.27 16 11 N -0.69 -12.36 4.97 -55.26 -0.27 -12.64 16 12 C 0.12 2.34 2.27 -68.50 -0.16 2.18 16 13 H 0.08 1.58 6.74 -51.93 -0.35 1.23 16 14 C -0.12 -1.98 5.07 -27.94 -0.14 -2.12 16 15 C -0.10 -1.57 5.16 -29.71 -0.15 -1.72 16 16 C -0.15 -2.57 5.74 -28.58 -0.16 -2.74 16 17 C 0.15 3.22 5.66 -4.08 -0.02 3.20 16 18 N -0.59 -14.46 2.27 -172.09 -0.39 -14.85 16 19 C -0.26 -6.97 9.44 -15.06 -0.14 -7.12 16 20 H 0.07 1.77 7.88 -52.48 -0.41 1.35 16 21 C 0.00 0.13 4.87 -17.43 -0.08 0.04 16 22 N -0.90 -26.47 11.01 55.49 0.61 -25.86 16 23 Si 0.90 21.82 29.58 -169.99 -5.03 16.79 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 C 0.17 4.20 4.25 -2.94 -0.01 4.19 16 28 N -0.25 -3.93 11.85 32.11 0.38 -3.55 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.41 6.41 8.30 -40.82 -0.34 6.07 16 39 H 0.05 0.79 7.94 -51.93 -0.41 0.38 16 40 H 0.08 1.61 7.48 -51.93 -0.39 1.22 16 41 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.05 0.79 7.36 -51.93 -0.38 0.41 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.05 0.99 7.99 -51.93 -0.41 0.58 16 46 H 0.03 0.68 8.07 -51.93 -0.42 0.26 16 47 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 48 H 0.08 2.13 6.31 -51.93 -0.33 1.81 16 49 H 0.03 0.94 8.03 -51.93 -0.42 0.52 16 LS Contribution 392.96 15.07 5.92 5.92 Total: -1.00 -33.16 392.96 -7.11 -40.27 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -8.07 Total: 2.83 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: -1.48 Total: 7.87 kcal Atomic # 7 Polarization: -63.87 SS G_CDS: 1.46 Total: -62.41 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.09 Total: -11.27 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.16 -7.11 -40.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034219496.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.577 kcal (2) G-P(sol) polarization free energy of solvation -33.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds