Wall clock time and date at job start Tue Mar 31 2020 20:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47294 * 2 1 4 4 C 1.53000 * 109.47203 * 239.99585 * 2 1 3 5 5 N 1.46505 * 109.47157 * 119.99666 * 2 1 3 6 6 N 1.28718 * 125.31619 * 0.02863 * 5 2 1 7 7 N 1.28987 * 108.98999 * 179.73565 * 6 5 2 8 8 C 1.34189 * 107.24798 * 359.97438 * 7 6 5 9 9 C 1.48000 * 126.69771 * 179.97438 * 8 7 6 10 10 O 1.21537 * 120.00301 * 179.97438 * 9 8 7 11 11 N 1.34777 * 120.00057 * 359.97438 * 9 8 7 12 12 C 1.46501 * 119.99782 * 179.97438 * 11 9 8 13 13 H 1.08995 * 109.36985 * 35.00389 * 12 11 9 14 14 C 1.50882 * 109.36454 * 154.74406 * 12 11 9 15 15 C 1.52719 * 109.27704 * 212.17868 * 14 12 11 16 16 C 1.47095 * 114.22776 * 274.83495 * 15 14 12 17 17 C 1.54864 * 110.32633 * 62.83097 * 16 15 14 18 18 N 1.44581 * 109.59890 * 288.73688 * 17 16 15 19 19 C 1.36934 * 118.64296 * 270.69842 * 18 17 16 20 20 H 1.08007 * 119.99777 * 26.52373 * 19 18 17 21 21 C 1.38810 * 120.00331 * 206.52456 * 19 18 17 22 22 N 1.31624 * 119.99792 * 15.66984 * 21 19 18 23 23 Si 1.86803 * 120.00266 * 195.67339 * 21 19 18 24 24 H 1.48500 * 109.47307 * 89.99623 * 23 21 19 25 25 H 1.48499 * 109.47052 * 209.99897 * 23 21 19 26 26 H 1.48496 * 109.47118 * 329.99962 * 23 21 19 27 27 C 1.47608 * 122.71308 * 90.72375 * 18 17 16 28 28 N 1.28864 * 125.32092 * 179.71879 * 5 2 1 29 29 H 1.08998 * 109.47093 * 300.00086 * 1 2 3 30 30 H 1.09002 * 109.46938 * 60.00574 * 1 2 3 31 31 H 1.09000 * 109.47219 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47612 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47133 * 299.99834 * 3 2 1 34 34 H 1.08997 * 109.47196 * 59.99383 * 3 2 1 35 35 H 1.08995 * 109.47498 * 300.00019 * 4 2 1 36 36 H 1.09003 * 109.46872 * 60.00381 * 4 2 1 37 37 H 1.09005 * 109.46724 * 180.02562 * 4 2 1 38 38 H 0.97000 * 119.99927 * 359.97438 * 11 9 8 39 39 H 1.08998 * 109.48965 * 332.04955 * 14 12 11 40 40 H 1.09005 * 109.48843 * 92.11635 * 14 12 11 41 41 H 1.08996 * 108.54350 * 153.62373 * 15 14 12 42 42 H 1.09000 * 108.58999 * 36.07197 * 15 14 12 43 43 H 1.08999 * 109.32616 * 302.56669 * 16 15 14 44 44 H 1.09004 * 109.19059 * 183.00519 * 16 15 14 45 45 H 1.08996 * 109.44987 * 168.69331 * 17 16 15 46 46 H 1.09003 * 109.44732 * 48.77174 * 17 16 15 47 47 H 0.96996 * 119.99839 * 180.02562 * 22 21 19 48 48 H 1.08999 * 108.94428 * 197.17845 * 27 18 17 49 49 H 1.08994 * 108.94358 * 78.55552 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1962 6 7 1.2761 -1.2168 2.1068 7 7 2.0306 -1.7445 3.0101 8 6 3.3028 -1.5342 2.6386 9 6 4.5188 -1.9612 3.3662 10 8 5.6181 -1.7049 2.9157 11 7 4.4071 -2.6344 4.5284 12 6 5.6108 -3.0576 5.2483 13 1 6.3904 -2.3064 5.1221 14 6 5.2907 -3.2045 6.7155 15 6 6.5269 -2.8505 7.5392 16 6 7.4666 -3.9663 7.7277 17 6 8.0340 -4.4282 6.3628 18 7 7.0008 -5.1063 5.6125 19 6 6.8521 -6.4579 5.7739 20 1 7.1552 -6.9280 6.6978 21 6 6.3119 -7.2239 4.7501 22 7 6.2288 -6.7306 3.5326 23 14 5.7029 -8.9549 5.1001 24 1 4.2694 -8.9069 5.4850 25 1 5.8609 -9.7908 3.8829 26 1 6.4941 -9.5429 6.2106 27 6 6.1000 -4.4018 4.6792 28 7 3.2580 -0.8710 1.4985 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 1.6767 -1.7490 -1.2492 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7217 -1.2489 38 1 3.5298 -2.8387 4.8882 39 1 4.4743 -2.5320 6.9786 40 1 4.9957 -4.2334 6.9221 41 1 6.2021 -2.5022 8.5196 42 1 7.0532 -2.0350 7.0431 43 1 6.9475 -4.7987 8.2030 44 1 8.2866 -3.6401 8.3676 45 1 8.8687 -5.1094 6.5285 46 1 8.3802 -3.5604 5.8013 47 1 5.8509 -7.2658 2.8173 48 1 5.2366 -5.0349 4.4749 49 1 6.6312 -4.2184 3.7453 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034219496.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:03:34 Heat of formation + Delta-G solvation = 89.570190 kcal Electronic energy + Delta-G solvation = -30121.442475 eV Core-core repulsion = 26121.572731 eV Total energy + Delta-G solvation = -3999.869744 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -45.62412 -41.11971 -39.30273 -38.61334 -36.19994 -35.25915 -34.68261 -33.70826 -32.67131 -31.60285 -28.64100 -28.55222 -27.98113 -26.74088 -25.82854 -25.62912 -24.55024 -22.35247 -21.75660 -21.45142 -20.92364 -19.09246 -18.64217 -18.52351 -17.74836 -17.42108 -17.05754 -16.17996 -16.10093 -15.67968 -15.36192 -15.29435 -15.19975 -15.06544 -14.96991 -14.37265 -14.08550 -14.06388 -13.76340 -13.49658 -13.30821 -13.23818 -13.01205 -12.95018 -12.86238 -12.83447 -12.65867 -12.46735 -12.38166 -12.20578 -12.14010 -12.12831 -12.07186 -11.89156 -11.62195 -11.48970 -11.46411 -11.35239 -11.14700 -10.51040 -10.18545 -8.66061 -7.83946 -5.32211 -0.18624 0.22908 0.62868 1.46148 1.47380 1.56337 1.64926 1.90007 2.51795 2.76524 2.92904 3.29258 3.47082 3.54313 3.61777 3.71030 3.91767 3.96128 4.07270 4.27582 4.28947 4.39600 4.42871 4.45787 4.51146 4.57008 4.59259 4.62318 4.71522 4.71967 4.83816 4.96474 5.00892 5.07717 5.09746 5.10062 5.16462 5.21184 5.27347 5.31636 5.34588 5.45539 5.53933 5.64547 5.71337 5.77902 6.24685 6.40592 6.85463 7.01593 7.17529 7.93484 8.34223 9.20174 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014126 B = 0.003018 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.737888 B = 9275.465982 C =10411.235058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.157 3.843 3 C -0.156 4.156 4 C -0.160 4.160 5 N -0.109 5.109 6 N -0.056 5.056 7 N -0.266 5.266 8 C 0.116 3.884 9 C 0.613 3.387 10 O -0.546 6.546 11 N -0.682 5.682 12 C 0.136 3.864 13 H 0.072 0.928 14 C -0.109 4.109 15 C -0.100 4.100 16 C -0.132 4.132 17 C 0.144 3.856 18 N -0.599 5.599 19 C -0.258 4.258 20 H 0.073 0.927 21 C -0.052 4.052 22 N -0.937 5.937 23 Si 0.964 3.036 24 H -0.285 1.285 25 H -0.301 1.301 26 H -0.265 1.265 27 C 0.193 3.807 28 N -0.258 5.258 29 H 0.073 0.927 30 H 0.129 0.871 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.131 0.869 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.133 0.867 37 H 0.060 0.940 38 H 0.417 0.583 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.080 0.920 42 H 0.056 0.944 43 H 0.050 0.950 44 H 0.078 0.922 45 H 0.039 0.961 46 H 0.033 0.967 47 H 0.245 0.755 48 H 0.048 0.952 49 H -0.021 1.021 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.311 18.155 -4.397 22.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.079 3.921 3 C -0.214 4.214 4 C -0.218 4.218 5 N -0.026 5.026 6 N -0.048 5.048 7 N -0.140 5.140 8 C -0.167 4.167 9 C 0.394 3.606 10 O -0.421 6.421 11 N -0.333 5.333 12 C 0.031 3.969 13 H 0.090 0.910 14 C -0.147 4.147 15 C -0.138 4.138 16 C -0.172 4.172 17 C 0.018 3.982 18 N -0.322 5.322 19 C -0.388 4.388 20 H 0.090 0.910 21 C -0.247 4.247 22 N -0.584 5.584 23 Si 0.793 3.207 24 H -0.211 1.211 25 H -0.228 1.228 26 H -0.190 1.190 27 C 0.066 3.934 28 N -0.112 5.112 29 H 0.092 0.908 30 H 0.148 0.852 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.149 0.851 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.151 0.849 37 H 0.079 0.921 38 H 0.254 0.746 39 H 0.105 0.895 40 H 0.081 0.919 41 H 0.099 0.901 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.097 0.903 45 H 0.058 0.942 46 H 0.051 0.949 47 H 0.054 0.946 48 H 0.066 0.934 49 H -0.003 1.003 Dipole moment (debyes) X Y Z Total from point charges -13.153 18.358 -4.969 23.124 hybrid contribution 0.109 -1.557 -0.130 1.566 sum -13.044 16.802 -5.099 21.873 Atomic orbital electron populations 1.22180 0.87650 1.04720 1.06102 1.22268 0.98269 0.93504 0.78024 1.22304 1.02459 0.90773 1.05883 1.22330 1.02431 1.01095 0.95937 1.51354 0.99957 1.32796 1.18491 1.78758 1.21425 1.08872 0.95771 1.76090 0.99686 1.17901 1.20372 1.25086 0.94383 1.03188 0.94078 1.16333 0.84649 0.78593 0.81066 1.90819 1.26814 1.57189 1.67235 1.45785 1.11474 1.54593 1.21478 1.21604 0.85700 0.96896 0.92717 0.90975 1.21277 0.99514 1.02670 0.91195 1.20265 0.95121 0.98136 1.00230 1.21328 0.99418 0.98400 0.98087 1.20984 0.90199 0.94947 0.92058 1.43727 1.34730 1.04160 1.49557 1.19538 1.37444 0.84226 0.97597 0.90960 1.25829 1.02880 1.01500 0.94521 1.70293 1.49503 1.38367 1.00215 0.85304 0.78485 0.80154 0.76763 1.21143 1.22774 1.18967 1.20923 0.93142 0.89928 0.89386 1.74958 1.04133 1.17278 1.14807 0.90835 0.85246 0.91407 0.92003 0.85052 0.91623 0.92321 0.84916 0.92122 0.74562 0.89514 0.91851 0.90111 0.92571 0.93074 0.90333 0.94242 0.94903 0.94601 0.93379 1.00258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 7.90 71.98 0.57 -0.73 16 2 C 0.16 2.25 1.30 3.60 0.00 2.26 16 3 C -0.16 -1.64 8.66 71.98 0.62 -1.01 16 4 C -0.16 -2.00 8.66 71.98 0.62 -1.38 16 5 N -0.11 -2.75 3.72 -152.25 -0.57 -3.32 16 6 N -0.06 -1.57 12.21 37.02 0.45 -1.12 16 7 N -0.27 -8.67 12.26 -52.36 -0.64 -9.31 16 8 C 0.12 4.16 8.14 137.15 1.12 5.27 16 9 C 0.61 24.66 7.80 86.83 0.68 25.33 16 10 O -0.55 -25.79 16.76 -3.83 -0.06 -25.86 16 11 N -0.68 -25.00 4.97 -447.02 -2.22 -27.22 16 12 C 0.14 5.38 2.27 44.62 0.10 5.48 16 13 H 0.07 2.98 6.74 -2.39 -0.02 2.96 16 14 C -0.11 -3.53 5.07 29.81 0.15 -3.38 16 15 C -0.10 -2.89 5.16 28.66 0.15 -2.74 16 16 C -0.13 -4.31 5.74 29.40 0.17 -4.14 16 17 C 0.14 6.06 5.66 87.37 0.49 6.55 16 18 N -0.60 -30.39 2.27 -698.36 -1.58 -31.97 16 19 C -0.26 -14.17 9.44 84.03 0.79 -13.37 16 20 H 0.07 3.83 7.88 -2.91 -0.02 3.81 16 21 C -0.05 -2.99 4.87 84.86 0.41 -2.57 16 22 N -0.94 -57.94 11.01 21.65 0.24 -57.70 16 23 Si 0.96 45.84 29.58 68.60 2.03 47.87 16 24 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 25 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 26 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 27 C 0.19 9.88 4.25 86.49 0.37 10.25 16 28 N -0.26 -8.39 11.85 -52.32 -0.62 -9.01 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.13 0.14 8.14 -2.39 -0.02 0.12 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.13 0.33 8.14 -2.39 -0.02 0.31 16 34 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 36 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.42 13.27 8.30 -92.71 -0.77 12.50 16 39 H 0.09 2.28 7.94 -2.39 -0.02 2.26 16 40 H 0.06 2.37 7.48 -2.38 -0.02 2.35 16 41 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.06 1.60 7.36 -2.39 -0.02 1.58 16 43 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 45 H 0.04 1.68 7.99 -2.39 -0.02 1.66 16 46 H 0.03 1.36 8.07 -2.39 -0.02 1.34 16 47 H 0.24 14.85 8.31 -92.71 -0.77 14.08 16 48 H 0.05 2.74 6.31 -2.39 -0.02 2.72 16 49 H -0.02 -1.26 8.03 -2.39 -0.02 -1.28 16 Total: -1.00 -77.32 392.96 3.45 -73.87 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: 0.18 Total: 17.96 kcal Atomic # 6 Polarization: 19.56 SS G_CDS: 6.25 Total: 25.81 kcal Atomic # 7 Polarization: -134.71 SS G_CDS: -4.94 Total: -139.65 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.06 Total: -25.86 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -77.32 3.45 -73.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034219496.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.437 kcal (2) G-P(sol) polarization free energy of solvation -77.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds