Wall clock time and date at job start Tue Mar 31 2020 19:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99887 * 2 1 4 4 C 1.52999 * 109.46731 * 180.02562 * 3 2 1 5 5 N 1.46509 * 109.46651 * 179.97438 * 4 3 2 6 6 N 1.28441 * 125.18607 * 85.61284 * 5 4 3 7 7 C 1.30865 * 110.92608 * 179.97438 * 6 5 4 8 8 C 1.39668 * 107.86088 * 0.26292 * 7 6 5 9 9 C 1.36596 * 125.19208 * 265.58765 * 5 4 3 10 10 C 1.47162 * 126.88422 * 359.97438 * 9 5 4 11 11 O 1.21628 * 119.99854 * 5.18956 * 10 9 5 12 12 N 1.34773 * 119.99959 * 185.18519 * 10 9 5 13 13 C 1.46495 * 120.00046 * 185.55298 * 12 10 9 14 14 H 1.09004 * 108.46302 * 325.00668 * 13 12 10 15 15 C 1.52531 * 108.52718 * 207.28982 * 13 12 10 16 16 C 1.50303 * 105.32736 * 149.24518 * 15 13 12 17 17 C 1.54841 * 110.69463 * 97.84536 * 16 15 13 18 18 C 1.54905 * 110.13558 * 321.12851 * 17 16 15 19 19 N 1.43431 * 116.08043 * 318.63338 * 18 17 16 20 20 C 1.36935 * 120.54205 * 271.60005 * 19 18 17 21 21 H 1.08007 * 119.99879 * 325.57290 * 20 19 18 22 22 C 1.38812 * 120.00139 * 145.57313 * 20 19 18 23 23 N 1.31611 * 119.99915 * 3.64382 * 22 20 19 24 24 Si 1.86798 * 119.99909 * 183.64425 * 22 20 19 25 25 H 1.48507 * 109.47313 * 60.00106 * 24 22 20 26 26 H 1.48505 * 109.47397 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47498 * 299.99937 * 24 22 20 28 28 C 1.46245 * 108.52239 * 82.71831 * 13 12 10 29 29 H 1.09000 * 109.47175 * 60.00068 * 1 2 3 30 30 H 1.08998 * 109.47047 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47271 * 300.00151 * 1 2 3 32 32 H 1.08990 * 109.47318 * 59.99770 * 3 2 1 33 33 H 1.09005 * 109.46973 * 299.99622 * 3 2 1 34 34 H 1.08998 * 109.47465 * 60.00074 * 4 3 2 35 35 H 1.08996 * 109.47166 * 299.99686 * 4 3 2 36 36 H 1.08003 * 126.06665 * 180.02562 * 7 6 5 37 37 H 1.08004 * 127.32088 * 179.73202 * 8 7 6 38 38 H 0.97003 * 119.99830 * 5.55977 * 12 10 9 39 39 H 1.08995 * 110.24947 * 268.33090 * 15 13 12 40 40 H 1.09004 * 110.24631 * 30.38441 * 15 13 12 41 41 H 1.08996 * 109.27900 * 337.53155 * 16 15 13 42 42 H 1.09008 * 109.26512 * 218.14772 * 16 15 13 43 43 H 1.08997 * 109.36199 * 200.92415 * 17 16 15 44 44 H 1.09004 * 109.25032 * 81.25682 * 17 16 15 45 45 H 1.09004 * 108.15230 * 196.92359 * 18 17 16 46 46 H 1.08995 * 108.16085 * 80.35950 * 18 17 16 47 47 H 0.97003 * 119.99909 * 179.97438 * 23 22 20 48 48 H 1.09006 * 109.84264 * 299.15557 * 28 13 12 49 49 H 1.08995 * 109.84365 * 60.13736 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1313 2.5231 -0.0013 6 7 4.3594 3.2321 1.0451 7 6 4.8981 4.3805 0.7232 8 6 5.0254 4.4192 -0.6671 9 6 4.5294 3.2070 -1.1146 10 6 4.4435 2.7489 -2.5105 11 8 3.8930 1.6964 -2.7723 12 7 4.9748 3.4956 -3.4987 13 6 4.7842 3.1027 -4.8970 14 1 4.7868 2.0141 -4.9531 15 6 5.9582 3.6328 -5.7138 16 6 6.1434 2.6446 -6.8310 17 6 5.4537 3.1448 -8.1239 18 6 4.1065 3.8277 -7.7797 19 7 3.3097 3.1810 -6.7777 20 6 2.4103 2.2084 -7.1245 21 1 1.8795 2.2736 -8.0629 22 6 2.1807 1.1388 -6.2701 23 7 2.7731 1.0959 -5.0956 24 14 1.0311 -0.2397 -6.7873 25 1 1.5460 -0.8749 -8.0269 26 1 0.9570 -1.2546 -5.7057 27 1 -0.3233 0.3141 -7.0407 28 6 3.4781 3.5876 -5.3419 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8464 -0.8901 34 1 3.8567 0.6439 -0.8908 35 1 3.8574 0.6436 0.8891 36 1 5.1888 5.1614 1.4104 37 1 5.4277 5.2232 -1.2657 38 1 5.4835 4.2932 -3.2840 39 1 5.7243 4.6192 -6.1142 40 1 6.8565 3.6774 -5.0980 41 1 5.7099 1.6876 -6.5405 42 1 7.2085 2.5120 -7.0210 43 1 5.2710 2.2989 -8.7866 44 1 6.1047 3.8618 -8.6242 45 1 3.5158 3.8932 -8.6935 46 1 4.3164 4.8431 -7.4439 47 1 2.6124 0.3486 -4.4983 48 1 2.6909 3.1394 -4.7356 49 1 3.4383 4.6735 -5.2577 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034263618.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:16 Heat of formation + Delta-G solvation = 39.748865 kcal Electronic energy + Delta-G solvation = -31200.165193 eV Core-core repulsion = 27165.842282 eV Total energy + Delta-G solvation = -4034.322910 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.38134 -39.17749 -37.90821 -37.30844 -34.30515 -33.58936 -33.06820 -31.19974 -30.62203 -29.26774 -29.15691 -26.28398 -26.08645 -24.21124 -23.78233 -23.16666 -22.25652 -21.19777 -19.80845 -19.58321 -18.78041 -17.66604 -16.69962 -16.49910 -16.01163 -15.89639 -15.46138 -15.17589 -14.87211 -14.55949 -14.32161 -14.18046 -13.84564 -13.66345 -13.47291 -13.37051 -12.97992 -12.75277 -12.41171 -12.25032 -12.03863 -11.83752 -11.47761 -11.31867 -11.29739 -11.05781 -10.76266 -10.71283 -10.62182 -10.22193 -10.13779 -9.90688 -9.77477 -9.68227 -9.51738 -9.41024 -9.16505 -9.06912 -8.88321 -8.41417 -8.15861 -6.45429 -5.59233 -3.19872 1.56072 2.40488 2.72945 3.44102 3.50972 3.52004 3.67976 3.81057 4.07047 4.58834 4.62239 4.94983 4.99105 5.08697 5.25074 5.32420 5.33722 5.42537 5.45211 5.57317 5.60534 5.63850 5.67653 5.70556 5.77091 5.80968 5.85028 5.94734 6.14247 6.23025 6.34238 6.42824 6.55336 6.59020 6.65736 6.82000 6.88216 6.97222 7.01024 7.08595 7.12880 7.19344 7.26701 7.61445 7.76523 7.92817 8.13420 8.30086 8.63041 8.92103 9.34406 9.93334 10.50876 11.43009 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010011 B = 0.004914 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2796.334851 B = 5696.362187 C = 8015.251299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.384 6.384 3 C 0.058 3.942 4 C 0.121 3.879 5 N -0.258 5.258 6 N -0.291 5.291 7 C -0.004 4.004 8 C -0.204 4.204 9 C -0.015 4.015 10 C 0.564 3.436 11 O -0.479 6.479 12 N -0.716 5.716 13 C 0.135 3.865 14 H 0.129 0.871 15 C -0.124 4.124 16 C -0.104 4.104 17 C -0.144 4.144 18 C 0.159 3.841 19 N -0.581 5.581 20 C -0.276 4.276 21 H 0.061 0.939 22 C 0.018 3.982 23 N -0.864 5.864 24 Si 0.890 3.110 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.287 1.287 28 C 0.156 3.844 29 H 0.046 0.954 30 H 0.088 0.912 31 H 0.039 0.961 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.131 0.869 35 H 0.100 0.900 36 H 0.182 0.818 37 H 0.158 0.842 38 H 0.384 0.616 39 H 0.062 0.938 40 H 0.053 0.947 41 H 0.073 0.927 42 H 0.037 0.963 43 H 0.051 0.949 44 H 0.042 0.958 45 H 0.030 0.970 46 H 0.024 0.976 47 H 0.264 0.736 48 H 0.103 0.897 49 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.499 5.876 9.389 11.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.302 6.302 3 C -0.020 4.020 4 C 0.000 4.000 5 N -0.046 5.046 6 N -0.122 5.122 7 C -0.181 4.181 8 C -0.233 4.233 9 C -0.144 4.144 10 C 0.346 3.654 11 O -0.350 6.350 12 N -0.368 5.368 13 C 0.032 3.968 14 H 0.146 0.854 15 C -0.162 4.162 16 C -0.142 4.142 17 C -0.185 4.185 18 C 0.030 3.970 19 N -0.303 5.303 20 C -0.406 4.406 21 H 0.078 0.922 22 C -0.184 4.184 23 N -0.506 5.506 24 Si 0.720 3.280 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.213 1.213 28 C 0.031 3.969 29 H 0.065 0.935 30 H 0.106 0.894 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.149 0.851 35 H 0.118 0.882 36 H 0.199 0.801 37 H 0.175 0.825 38 H 0.217 0.783 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.055 0.945 43 H 0.070 0.930 44 H 0.060 0.940 45 H 0.049 0.951 46 H 0.042 0.958 47 H 0.075 0.925 48 H 0.121 0.879 49 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges 3.680 3.967 10.236 11.578 hybrid contribution -0.175 0.428 -0.762 0.891 sum 3.505 4.396 9.474 11.017 Atomic orbital electron populations 1.22749 0.80307 1.02890 1.00176 1.87782 1.20248 1.26633 1.95517 1.22597 0.92487 0.85652 1.01277 1.21838 0.92656 0.78385 1.07076 1.45463 1.42479 1.14364 1.02286 1.73158 1.18939 1.05935 1.14189 1.23500 1.03697 0.95793 0.95087 1.22205 1.07912 0.97712 0.95434 1.22081 1.06851 0.94589 0.90883 1.16959 0.80835 0.85310 0.82305 1.90994 1.40690 1.20864 1.82497 1.46165 1.55078 1.28222 1.07352 1.21295 0.95039 1.04891 0.75545 0.85382 1.21407 0.97574 0.99598 0.97603 1.21303 0.97864 0.99856 0.95179 1.22892 0.98978 1.00001 0.96605 1.20430 0.90220 0.93597 0.92790 1.43833 1.41217 1.44069 1.01136 1.18928 1.17046 0.99273 1.05312 0.92162 1.25365 0.98800 0.96898 0.97316 1.69738 1.42971 1.31123 1.06719 0.86601 0.80773 0.82978 0.77604 1.21192 1.21708 1.21350 1.20497 0.96899 0.92882 0.86601 0.93487 0.89381 0.94259 0.93073 0.91773 0.85101 0.88211 0.80059 0.82482 0.78323 0.91929 0.92838 0.90861 0.94465 0.93010 0.93963 0.95136 0.95753 0.92472 0.87941 0.98342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 11.01 101.05 1.11 1.55 16 2 O -0.38 -5.96 10.70 -35.23 -0.38 -6.34 16 3 C 0.06 0.87 6.26 37.16 0.23 1.11 16 4 C 0.12 1.83 6.24 -4.04 -0.03 1.80 16 5 N -0.26 -4.02 3.35 -57.14 -0.19 -4.21 16 6 N -0.29 -4.29 11.90 30.59 0.36 -3.93 16 7 C 0.00 -0.05 12.03 -17.43 -0.21 -0.26 16 8 C -0.20 -2.61 10.50 -38.99 -0.41 -3.02 16 9 C -0.01 -0.24 6.96 -82.06 -0.57 -0.81 16 10 C 0.56 10.42 7.62 -12.64 -0.10 10.32 16 11 O -0.48 -10.58 12.07 5.25 0.06 -10.52 16 12 N -0.72 -12.09 4.88 -58.38 -0.29 -12.38 16 13 C 0.14 2.69 1.82 -71.38 -0.13 2.56 16 14 H 0.13 3.13 4.50 -51.93 -0.23 2.89 16 15 C -0.12 -2.10 5.24 -28.32 -0.15 -2.25 16 16 C -0.10 -1.90 5.66 -27.11 -0.15 -2.05 16 17 C -0.14 -2.63 6.41 -24.76 -0.16 -2.78 16 18 C 0.16 3.24 5.17 -4.66 -0.02 3.21 16 19 N -0.58 -13.88 2.59 -175.08 -0.45 -14.33 16 20 C -0.28 -7.35 9.58 -15.06 -0.14 -7.49 16 21 H 0.06 1.62 7.83 -52.48 -0.41 1.21 16 22 C 0.02 0.48 5.33 -17.43 -0.09 0.39 16 23 N -0.86 -23.40 7.01 55.49 0.39 -23.01 16 24 Si 0.89 21.65 29.55 -169.99 -5.02 16.63 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 C 0.16 3.52 4.63 -5.20 -0.02 3.49 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 34 H 0.13 2.24 6.18 -51.93 -0.32 1.92 16 35 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.18 1.56 8.06 -52.48 -0.42 1.14 16 37 H 0.16 1.54 7.63 -52.48 -0.40 1.14 16 38 H 0.38 5.16 7.67 -40.82 -0.31 4.85 16 39 H 0.06 1.02 6.27 -51.93 -0.33 0.70 16 40 H 0.05 0.80 8.03 -51.93 -0.42 0.38 16 41 H 0.07 1.60 6.82 -51.93 -0.35 1.25 16 42 H 0.04 0.60 8.14 -51.92 -0.42 0.17 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.03 0.63 8.00 -51.93 -0.42 0.21 16 46 H 0.02 0.46 6.88 -51.93 -0.36 0.10 16 47 H 0.26 7.39 8.02 -40.82 -0.33 7.07 16 48 H 0.10 2.71 6.08 -51.93 -0.32 2.39 16 49 H 0.00 -0.03 8.12 -51.93 -0.42 -0.45 16 LS Contribution 381.21 15.07 5.74 5.74 Total: -1.00 -29.97 381.21 -8.25 -38.22 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -7.64 Total: 8.34 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: -0.84 Total: 5.78 kcal Atomic # 7 Polarization: -57.68 SS G_CDS: -0.18 Total: -57.86 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.31 Total: -16.85 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.97 -8.25 -38.22 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034263618.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.965 kcal (2) G-P(sol) polarization free energy of solvation -29.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds