Wall clock time and date at job start Tue Mar 31 2020 19:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99887 * 2 1 4 4 C 1.52999 * 109.46731 * 180.02562 * 3 2 1 5 5 N 1.46509 * 109.46651 * 179.97438 * 4 3 2 6 6 N 1.28441 * 125.18607 * 85.61284 * 5 4 3 7 7 C 1.30865 * 110.92608 * 179.97438 * 6 5 4 8 8 C 1.39668 * 107.86088 * 0.26292 * 7 6 5 9 9 C 1.36596 * 125.19208 * 265.58765 * 5 4 3 10 10 C 1.47162 * 126.88422 * 359.97438 * 9 5 4 11 11 O 1.21628 * 119.99854 * 5.18956 * 10 9 5 12 12 N 1.34773 * 119.99959 * 185.18519 * 10 9 5 13 13 C 1.46495 * 120.00046 * 185.55298 * 12 10 9 14 14 H 1.09004 * 108.46302 * 325.00668 * 13 12 10 15 15 C 1.52531 * 108.52718 * 207.28982 * 13 12 10 16 16 C 1.50303 * 105.32736 * 149.24518 * 15 13 12 17 17 C 1.54841 * 110.69463 * 97.84536 * 16 15 13 18 18 C 1.54905 * 110.13558 * 321.12851 * 17 16 15 19 19 N 1.43431 * 116.08043 * 318.63338 * 18 17 16 20 20 C 1.36935 * 120.54205 * 271.60005 * 19 18 17 21 21 H 1.08007 * 119.99879 * 325.57290 * 20 19 18 22 22 C 1.38812 * 120.00139 * 145.57313 * 20 19 18 23 23 N 1.31611 * 119.99915 * 3.64382 * 22 20 19 24 24 Si 1.86798 * 119.99909 * 183.64425 * 22 20 19 25 25 H 1.48507 * 109.47313 * 60.00106 * 24 22 20 26 26 H 1.48505 * 109.47397 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.47498 * 299.99937 * 24 22 20 28 28 C 1.46245 * 108.52239 * 82.71831 * 13 12 10 29 29 H 1.09000 * 109.47175 * 60.00068 * 1 2 3 30 30 H 1.08998 * 109.47047 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47271 * 300.00151 * 1 2 3 32 32 H 1.08990 * 109.47318 * 59.99770 * 3 2 1 33 33 H 1.09005 * 109.46973 * 299.99622 * 3 2 1 34 34 H 1.08998 * 109.47465 * 60.00074 * 4 3 2 35 35 H 1.08996 * 109.47166 * 299.99686 * 4 3 2 36 36 H 1.08003 * 126.06665 * 180.02562 * 7 6 5 37 37 H 1.08004 * 127.32088 * 179.73202 * 8 7 6 38 38 H 0.97003 * 119.99830 * 5.55977 * 12 10 9 39 39 H 1.08995 * 110.24947 * 268.33090 * 15 13 12 40 40 H 1.09004 * 110.24631 * 30.38441 * 15 13 12 41 41 H 1.08996 * 109.27900 * 337.53155 * 16 15 13 42 42 H 1.09008 * 109.26512 * 218.14772 * 16 15 13 43 43 H 1.08997 * 109.36199 * 200.92415 * 17 16 15 44 44 H 1.09004 * 109.25032 * 81.25682 * 17 16 15 45 45 H 1.09004 * 108.15230 * 196.92359 * 18 17 16 46 46 H 1.08995 * 108.16085 * 80.35950 * 18 17 16 47 47 H 0.97003 * 119.99909 * 179.97438 * 23 22 20 48 48 H 1.09006 * 109.84264 * 299.15557 * 28 13 12 49 49 H 1.08995 * 109.84365 * 60.13736 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1313 2.5231 -0.0013 6 7 4.3594 3.2321 1.0451 7 6 4.8981 4.3805 0.7232 8 6 5.0254 4.4192 -0.6671 9 6 4.5294 3.2070 -1.1146 10 6 4.4435 2.7489 -2.5105 11 8 3.8930 1.6964 -2.7723 12 7 4.9748 3.4956 -3.4987 13 6 4.7842 3.1027 -4.8970 14 1 4.7868 2.0141 -4.9531 15 6 5.9582 3.6328 -5.7138 16 6 6.1434 2.6446 -6.8310 17 6 5.4537 3.1448 -8.1239 18 6 4.1065 3.8277 -7.7797 19 7 3.3097 3.1810 -6.7777 20 6 2.4103 2.2084 -7.1245 21 1 1.8795 2.2736 -8.0629 22 6 2.1807 1.1388 -6.2701 23 7 2.7731 1.0959 -5.0956 24 14 1.0311 -0.2397 -6.7873 25 1 1.5460 -0.8749 -8.0269 26 1 0.9570 -1.2546 -5.7057 27 1 -0.3233 0.3141 -7.0407 28 6 3.4781 3.5876 -5.3419 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8464 -0.8901 34 1 3.8567 0.6439 -0.8908 35 1 3.8574 0.6436 0.8891 36 1 5.1888 5.1614 1.4104 37 1 5.4277 5.2232 -1.2657 38 1 5.4835 4.2932 -3.2840 39 1 5.7243 4.6192 -6.1142 40 1 6.8565 3.6774 -5.0980 41 1 5.7099 1.6876 -6.5405 42 1 7.2085 2.5120 -7.0210 43 1 5.2710 2.2989 -8.7866 44 1 6.1047 3.8618 -8.6242 45 1 3.5158 3.8932 -8.6935 46 1 4.3164 4.8431 -7.4439 47 1 2.6124 0.3486 -4.4983 48 1 2.6909 3.1394 -4.7356 49 1 3.4383 4.6735 -5.2577 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034263618.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:15 Heat of formation + Delta-G solvation = 19.915239 kcal Electronic energy + Delta-G solvation = -31201.025243 eV Core-core repulsion = 27165.842282 eV Total energy + Delta-G solvation = -4035.182961 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.48529 -40.68667 -39.09296 -38.86612 -35.82214 -35.00856 -34.59368 -32.70843 -32.30168 -30.61955 -30.31501 -27.90953 -27.33583 -25.78796 -25.24257 -24.51775 -23.63418 -22.43339 -21.36929 -20.93671 -20.29602 -18.93731 -18.53823 -17.73792 -17.19213 -17.15351 -16.86343 -16.71883 -16.41161 -15.98022 -15.68217 -15.48882 -15.38426 -15.21121 -14.82375 -14.59724 -14.43255 -14.08829 -13.92906 -13.72835 -13.41412 -13.15145 -13.14175 -12.91147 -12.66193 -12.61284 -12.41522 -12.39657 -12.05093 -11.91670 -11.76719 -11.61025 -11.29308 -11.19535 -11.03550 -10.86811 -10.65179 -10.33342 -10.22003 -9.99322 -9.72400 -8.34084 -7.63539 -5.24598 0.37311 1.27192 1.44254 1.46710 1.52177 1.73423 2.35398 2.47770 2.57286 2.90014 3.44046 3.50815 3.68385 3.77957 3.97797 3.98754 4.07999 4.09086 4.25819 4.26771 4.33846 4.36451 4.38799 4.54019 4.58485 4.66371 4.70431 4.72415 4.76078 4.80128 4.92257 4.93842 4.98761 5.09888 5.33713 5.42677 5.48447 5.51639 5.58795 5.68216 5.69534 5.74972 5.82850 5.95426 5.98632 6.04613 6.58902 6.83377 7.12832 7.30269 7.61695 7.99464 8.52769 9.31535 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010011 B = 0.004914 C = 0.003493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2796.334851 B = 5696.362187 C = 8015.251299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.404 6.404 3 C 0.070 3.930 4 C 0.126 3.874 5 N -0.269 5.269 6 N -0.305 5.305 7 C 0.004 3.996 8 C -0.181 4.181 9 C -0.047 4.047 10 C 0.559 3.441 11 O -0.525 6.525 12 N -0.703 5.703 13 C 0.147 3.853 14 H 0.082 0.918 15 C -0.111 4.111 16 C -0.101 4.101 17 C -0.136 4.136 18 C 0.152 3.848 19 N -0.597 5.597 20 C -0.285 4.285 21 H 0.052 0.948 22 C -0.025 4.025 23 N -0.863 5.863 24 Si 0.938 3.062 25 H -0.283 1.283 26 H -0.302 1.302 27 H -0.284 1.284 28 C 0.165 3.835 29 H 0.033 0.967 30 H 0.106 0.894 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.032 0.968 34 H 0.103 0.897 35 H 0.117 0.883 36 H 0.224 0.776 37 H 0.193 0.807 38 H 0.405 0.595 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.026 0.974 42 H 0.065 0.935 43 H 0.033 0.967 44 H 0.080 0.920 45 H 0.023 0.977 46 H 0.047 0.953 47 H 0.247 0.753 48 H 0.057 0.943 49 H 0.014 0.986 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.366 8.562 10.215 14.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.322 6.322 3 C -0.008 4.008 4 C 0.005 3.995 5 N -0.058 5.058 6 N -0.137 5.137 7 C -0.173 4.173 8 C -0.209 4.209 9 C -0.175 4.175 10 C 0.343 3.657 11 O -0.400 6.400 12 N -0.357 5.357 13 C 0.043 3.957 14 H 0.100 0.900 15 C -0.149 4.149 16 C -0.139 4.139 17 C -0.177 4.177 18 C 0.024 3.976 19 N -0.320 5.320 20 C -0.416 4.416 21 H 0.070 0.930 22 C -0.226 4.226 23 N -0.504 5.504 24 Si 0.768 3.232 25 H -0.209 1.209 26 H -0.229 1.229 27 H -0.210 1.210 28 C 0.040 3.960 29 H 0.052 0.948 30 H 0.124 0.876 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.051 0.949 34 H 0.121 0.879 35 H 0.135 0.865 36 H 0.241 0.759 37 H 0.210 0.790 38 H 0.241 0.759 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.045 0.955 42 H 0.083 0.917 43 H 0.052 0.948 44 H 0.099 0.901 45 H 0.041 0.959 46 H 0.066 0.934 47 H 0.057 0.943 48 H 0.075 0.925 49 H 0.032 0.968 Dipole moment (debyes) X Y Z Total from point charges 5.574 6.700 11.050 14.073 hybrid contribution -0.777 -0.324 -1.001 1.308 sum 4.797 6.376 10.048 12.831 Atomic orbital electron populations 1.22957 0.78799 1.04301 1.00657 1.87756 1.22025 1.26890 1.95567 1.22448 0.92634 0.85417 1.00316 1.21684 0.92536 0.78846 1.06454 1.45458 1.43303 1.14513 1.02499 1.73165 1.19542 1.06948 1.14034 1.24247 1.01863 0.95556 0.95595 1.22675 1.05492 0.96734 0.96018 1.21903 1.09562 0.96329 0.89675 1.17374 0.79898 0.84764 0.83654 1.90983 1.42583 1.22974 1.83464 1.45888 1.54961 1.28776 1.06063 1.20774 0.95204 1.02228 0.77482 0.90003 1.21335 0.97113 0.99572 0.96855 1.21242 0.99095 0.97982 0.95577 1.22805 0.98271 1.00040 0.96570 1.20567 0.90834 0.94517 0.91640 1.43959 1.41869 1.43837 1.02306 1.19028 1.17771 0.99984 1.04822 0.93016 1.25896 1.00403 0.98564 0.97702 1.69985 1.43444 1.30249 1.06698 0.85836 0.79658 0.80908 0.76766 1.20907 1.22903 1.21022 1.20303 0.96994 0.93123 0.85555 0.94831 0.87596 0.91885 0.91485 0.94943 0.87876 0.86486 0.75927 0.79017 0.75869 0.90221 0.89945 0.95512 0.91682 0.94831 0.90119 0.95860 0.93431 0.94269 0.92451 0.96764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.73 11.01 113.37 1.25 1.97 16 2 O -0.40 -13.08 10.70 -148.98 -1.59 -14.67 16 3 C 0.07 2.22 6.26 71.98 0.45 2.67 16 4 C 0.13 3.98 6.24 86.38 0.54 4.52 16 5 N -0.27 -8.37 3.35 -334.68 -1.12 -9.49 16 6 N -0.31 -8.46 11.90 -57.14 -0.68 -9.14 16 7 C 0.00 0.08 12.03 85.18 1.02 1.11 16 8 C -0.18 -4.04 10.50 22.66 0.24 -3.80 16 9 C -0.05 -1.45 6.96 40.79 0.28 -1.17 16 10 C 0.56 21.20 7.62 86.59 0.66 21.86 16 11 O -0.53 -24.88 12.07 -4.12 -0.05 -24.93 16 12 N -0.70 -23.27 4.88 -456.85 -2.23 -25.50 16 13 C 0.15 5.86 1.82 42.76 0.08 5.94 16 14 H 0.08 4.17 4.50 -2.39 -0.01 4.16 16 15 C -0.11 -3.46 5.24 29.57 0.16 -3.30 16 16 C -0.10 -3.52 5.66 30.35 0.17 -3.35 16 17 C -0.14 -4.70 6.41 31.87 0.20 -4.50 16 18 C 0.15 6.01 5.17 87.60 0.45 6.47 16 19 N -0.60 -28.87 2.59 -707.82 -1.83 -30.70 16 20 C -0.29 -15.68 9.58 84.03 0.80 -14.88 16 21 H 0.05 2.87 7.83 -2.91 -0.02 2.85 16 22 C -0.03 -1.41 5.33 84.86 0.45 -0.95 16 23 N -0.86 -49.57 7.01 21.65 0.15 -49.42 16 24 Si 0.94 46.46 29.55 68.60 2.03 48.49 16 25 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 26 H -0.30 -15.40 7.11 99.48 0.71 -14.70 16 27 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 28 C 0.16 7.53 4.63 83.58 0.39 7.92 16 29 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 31 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.07 1.87 8.14 -2.39 -0.02 1.86 16 33 H 0.03 1.22 8.14 -2.38 -0.02 1.20 16 34 H 0.10 3.86 6.18 -2.39 -0.01 3.84 16 35 H 0.12 3.17 8.14 -2.39 -0.02 3.15 16 36 H 0.22 2.66 8.06 -2.91 -0.02 2.63 16 37 H 0.19 2.79 7.63 -2.91 -0.02 2.77 16 38 H 0.41 9.75 7.67 -92.71 -0.71 9.04 16 39 H 0.08 2.26 6.27 -2.39 -0.01 2.24 16 40 H 0.08 2.12 8.03 -2.38 -0.02 2.10 16 41 H 0.03 1.18 6.82 -2.39 -0.02 1.17 16 42 H 0.06 1.90 8.14 -2.38 -0.02 1.88 16 43 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 45 H 0.02 0.94 8.00 -2.38 -0.02 0.92 16 46 H 0.05 1.65 6.88 -2.39 -0.02 1.63 16 47 H 0.25 14.86 8.02 -92.71 -0.74 14.12 16 48 H 0.06 3.17 6.08 -2.38 -0.01 3.15 16 49 H 0.01 0.60 8.12 -2.39 -0.02 0.58 16 Total: -1.00 -70.72 381.21 2.10 -68.63 By element: Atomic # 1 Polarization: 25.98 SS G_CDS: 0.28 Total: 26.26 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: 7.15 Total: 20.49 kcal Atomic # 7 Polarization: -118.54 SS G_CDS: -5.71 Total: -124.26 kcal Atomic # 8 Polarization: -37.96 SS G_CDS: -1.64 Total: -39.60 kcal Atomic # 14 Polarization: 46.46 SS G_CDS: 2.03 Total: 48.49 kcal Total: -70.72 2.10 -68.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034263618.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.541 kcal (2) G-P(sol) polarization free energy of solvation -70.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds