Wall clock time and date at job start Tue Mar 31 2020 19:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99805 * 2 1 4 4 C 1.53003 * 109.46528 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.46762 * 180.02562 * 4 3 2 6 6 N 1.28441 * 125.19268 * 267.26272 * 5 4 3 7 7 C 1.30858 * 110.92852 * 179.97438 * 6 5 4 8 8 C 1.39672 * 107.86498 * 359.77135 * 7 6 5 9 9 C 1.36606 * 125.18875 * 87.24137 * 5 4 3 10 10 C 1.47165 * 126.88162 * 359.97438 * 9 5 4 11 11 O 1.21623 * 119.99993 * 5.46447 * 10 9 5 12 12 N 1.34777 * 119.99573 * 185.46398 * 10 9 5 13 13 C 1.46500 * 119.99909 * 174.93684 * 12 10 9 14 14 H 1.09007 * 109.36223 * 35.25875 * 13 12 10 15 15 C 1.50881 * 109.36747 * 155.00101 * 13 12 10 16 16 C 1.52561 * 109.36058 * 212.08183 * 15 13 12 17 17 C 1.47099 * 114.32585 * 274.98956 * 16 15 13 18 18 C 1.54862 * 110.32478 * 62.79893 * 17 16 15 19 19 N 1.44573 * 109.60112 * 288.73936 * 18 17 16 20 20 C 1.36946 * 118.64066 * 270.70266 * 19 18 17 21 21 H 1.08001 * 119.99674 * 32.60915 * 20 19 18 22 22 C 1.38812 * 119.99884 * 212.60753 * 20 19 18 23 23 N 1.31622 * 119.99767 * 198.04899 * 22 20 19 24 24 Si 1.86803 * 119.99926 * 18.04579 * 22 20 19 25 25 H 1.48503 * 109.47075 * 275.28313 * 24 22 20 26 26 H 1.48504 * 109.46788 * 155.28906 * 24 22 20 27 27 H 1.48491 * 109.47053 * 35.28652 * 24 22 20 28 28 C 1.47601 * 122.71718 * 90.98118 * 19 18 17 29 29 H 1.09001 * 109.47154 * 59.99436 * 1 2 3 30 30 H 1.08997 * 109.47639 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46819 * 300.00180 * 1 2 3 32 32 H 1.08998 * 109.47185 * 60.00502 * 3 2 1 33 33 H 1.08997 * 109.47241 * 299.99875 * 3 2 1 34 34 H 1.08997 * 109.47473 * 60.00715 * 4 3 2 35 35 H 1.09002 * 109.47412 * 299.99930 * 4 3 2 36 36 H 1.07999 * 126.07229 * 179.97438 * 7 6 5 37 37 H 1.07998 * 127.32733 * 180.23106 * 8 7 6 38 38 H 0.97002 * 120.00170 * 354.94678 * 12 10 9 39 39 H 1.08996 * 109.48853 * 92.11385 * 15 13 12 40 40 H 1.09004 * 109.49034 * 332.04909 * 15 13 12 41 41 H 1.08998 * 108.51600 * 153.73544 * 16 15 13 42 42 H 1.09000 * 108.39510 * 36.15048 * 16 15 13 43 43 H 1.09006 * 109.32787 * 302.53871 * 17 16 15 44 44 H 1.08997 * 109.18860 * 182.97268 * 17 16 15 45 45 H 1.08996 * 109.45340 * 168.69267 * 18 17 16 46 46 H 1.09000 * 109.42673 * 48.76133 * 18 17 16 47 47 H 0.96998 * 119.99295 * 179.97438 * 23 22 20 48 48 H 1.08997 * 108.94792 * 78.29476 * 28 19 18 49 49 H 1.09000 * 108.95168 * 196.92611 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1313 2.5230 0.0000 6 7 4.4778 3.1795 -1.0482 7 6 4.9792 4.3444 -0.7256 8 6 4.9494 4.4530 0.6666 9 6 4.4029 3.2633 1.1155 10 6 4.1571 2.8762 2.5138 11 8 3.7551 1.7581 2.7736 12 7 4.3775 3.7607 3.5066 13 6 4.0286 3.4148 4.8867 14 1 4.2115 2.3527 5.0504 15 6 4.8807 4.2213 5.8354 16 6 5.1447 3.4048 7.0968 17 6 4.0850 3.4993 8.1127 18 6 2.7560 2.9295 7.5584 19 7 2.2190 3.8312 6.5640 20 6 1.3790 4.8330 6.9718 21 1 1.5129 5.2886 7.9418 22 6 0.3555 5.2627 6.1384 23 7 -0.2193 6.4279 6.3490 24 14 -0.2061 4.1874 4.7179 25 1 0.6679 4.4256 3.5411 26 1 -1.6097 4.5229 4.3679 27 1 -0.1228 2.7591 5.1153 28 6 2.5339 3.7130 5.1269 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8567 0.6440 -0.8909 35 1 3.8575 0.6435 0.8891 36 1 5.3474 5.0908 -1.4138 37 1 5.2839 5.2870 1.2656 38 1 4.7670 4.6264 3.3072 39 1 4.3593 5.1411 6.1001 40 1 5.8283 4.4653 5.3552 41 1 6.0804 3.7453 7.5400 42 1 5.2585 2.3588 6.8119 43 1 3.9423 4.5441 8.3889 44 1 4.3818 2.9306 8.9939 45 1 2.0404 2.8196 8.3731 46 1 2.9406 1.9562 7.1037 47 1 -0.9343 6.7283 5.7664 48 1 1.9357 2.9089 4.6984 49 1 2.2751 4.6479 4.6297 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034263621.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:20 Heat of formation + Delta-G solvation = 25.081845 kcal Electronic energy + Delta-G solvation = -30759.336917 eV Core-core repulsion = 26724.377997 eV Total energy + Delta-G solvation = -4034.958920 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.69778 -39.68065 -38.16602 -37.86989 -34.88348 -33.97400 -33.62774 -31.59726 -31.30524 -29.81194 -29.46280 -26.50874 -26.27590 -25.00438 -24.07781 -23.39879 -22.46172 -21.43207 -20.47266 -19.81576 -19.55317 -18.05689 -16.92458 -16.79815 -16.29005 -16.23323 -16.09864 -15.62264 -15.42947 -14.89216 -14.82932 -14.39734 -14.32292 -14.06774 -13.82578 -13.68983 -13.26353 -13.11880 -12.98405 -12.83642 -12.29383 -12.14654 -11.84416 -11.75055 -11.55868 -11.53128 -11.46612 -10.98222 -10.67236 -10.63573 -10.39620 -10.15268 -10.04859 -9.98566 -9.94901 -9.90727 -9.51731 -9.39562 -9.22399 -8.85352 -8.59538 -6.89603 -6.02142 -3.43923 1.13812 2.06666 2.46827 3.09566 3.22213 3.28648 3.43734 3.50174 3.73923 4.33735 4.47100 4.51177 4.67794 4.79992 4.92377 5.00269 5.04322 5.13949 5.14616 5.21282 5.21339 5.35681 5.38027 5.45712 5.47214 5.50504 5.53387 5.60047 5.67808 5.72376 5.91310 6.15319 6.21048 6.30044 6.31922 6.35900 6.47353 6.51836 6.54042 6.56497 6.70522 6.76580 6.82492 6.83081 7.01644 7.49742 7.89027 7.99676 8.17214 8.33459 8.95951 9.68464 10.02535 11.13632 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010133 B = 0.004328 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2762.534835 B = 6468.512202 C = 7526.006012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.384 6.384 3 C 0.053 3.947 4 C 0.121 3.879 5 N -0.256 5.256 6 N -0.279 5.279 7 C 0.000 4.000 8 C -0.188 4.188 9 C -0.030 4.030 10 C 0.585 3.415 11 O -0.537 6.537 12 N -0.703 5.703 13 C 0.132 3.868 14 H 0.085 0.915 15 C -0.117 4.117 16 C -0.100 4.100 17 C -0.146 4.146 18 C 0.154 3.846 19 N -0.597 5.597 20 C -0.267 4.267 21 H 0.085 0.915 22 C 0.032 3.968 23 N -0.905 5.905 24 Si 0.883 3.117 25 H -0.289 1.289 26 H -0.304 1.304 27 H -0.274 1.274 28 C 0.123 3.877 29 H 0.042 0.958 30 H 0.091 0.909 31 H 0.046 0.954 32 H 0.060 0.940 33 H 0.056 0.944 34 H 0.107 0.893 35 H 0.126 0.874 36 H 0.188 0.812 37 H 0.163 0.837 38 H 0.402 0.598 39 H 0.087 0.913 40 H 0.058 0.942 41 H 0.049 0.951 42 H 0.050 0.950 43 H 0.066 0.934 44 H 0.051 0.949 45 H 0.056 0.944 46 H 0.035 0.965 47 H 0.263 0.737 48 H 0.024 0.976 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.841 -6.529 -11.145 16.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.302 6.302 3 C -0.025 4.025 4 C 0.000 4.000 5 N -0.045 5.045 6 N -0.111 5.111 7 C -0.176 4.176 8 C -0.217 4.217 9 C -0.158 4.158 10 C 0.370 3.630 11 O -0.414 6.414 12 N -0.354 5.354 13 C 0.027 3.973 14 H 0.103 0.897 15 C -0.155 4.155 16 C -0.138 4.138 17 C -0.186 4.186 18 C 0.027 3.973 19 N -0.320 5.320 20 C -0.396 4.396 21 H 0.103 0.897 22 C -0.168 4.168 23 N -0.547 5.547 24 Si 0.714 3.286 25 H -0.216 1.216 26 H -0.232 1.232 27 H -0.199 1.199 28 C -0.004 4.004 29 H 0.061 0.939 30 H 0.109 0.891 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.126 0.874 35 H 0.144 0.856 36 H 0.205 0.795 37 H 0.180 0.820 38 H 0.237 0.763 39 H 0.106 0.894 40 H 0.076 0.924 41 H 0.068 0.932 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.070 0.930 45 H 0.075 0.925 46 H 0.053 0.947 47 H 0.073 0.927 48 H 0.042 0.958 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 10.171 -8.245 -11.888 17.685 hybrid contribution -0.309 0.826 -0.408 0.971 sum 9.862 -7.419 -12.296 17.421 Atomic orbital electron populations 1.22802 0.79977 1.03126 1.00475 1.87767 1.20514 1.26384 1.95566 1.22647 0.92472 0.85862 1.01521 1.21837 0.92558 0.78375 1.07206 1.45489 1.42612 1.14452 1.01955 1.73210 1.16585 1.07641 1.13658 1.23585 1.03916 0.95157 0.94989 1.22299 1.06113 0.97566 0.95727 1.21580 1.09646 0.94659 0.89956 1.16949 0.78008 0.85015 0.83045 1.90802 1.46478 1.20126 1.83992 1.45904 1.63348 1.18604 1.07514 1.21706 0.97039 1.00365 0.78226 0.89708 1.21289 0.98293 1.00691 0.95269 1.20237 0.98589 0.99311 0.95622 1.21448 0.97556 1.02457 0.97188 1.20825 0.93051 0.91276 0.92143 1.43826 1.53331 1.33972 1.00859 1.18912 1.06027 1.10309 1.04320 0.89719 1.25398 0.96672 0.96508 0.98177 1.69818 1.26934 1.18142 1.39851 0.87033 0.76762 0.82113 0.82734 1.21649 1.23239 1.19918 1.22098 0.91636 1.00167 0.86482 0.93903 0.89057 0.93521 0.92149 0.92592 0.87431 0.85571 0.79506 0.81959 0.76318 0.89440 0.92380 0.93194 0.93123 0.91529 0.93000 0.92522 0.94678 0.92727 0.95834 0.91007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 101.05 1.11 1.47 16 2 O -0.38 -5.21 10.70 -35.23 -0.38 -5.59 16 3 C 0.05 0.72 6.26 37.16 0.23 0.95 16 4 C 0.12 1.57 6.15 -4.04 -0.02 1.54 16 5 N -0.26 -3.57 3.35 -57.13 -0.19 -3.76 16 6 N -0.28 -3.70 11.90 30.59 0.36 -3.34 16 7 C 0.00 0.00 12.03 -17.43 -0.21 -0.21 16 8 C -0.19 -2.14 10.50 -38.98 -0.41 -2.55 16 9 C -0.03 -0.43 6.96 -82.05 -0.57 -1.00 16 10 C 0.59 9.43 7.75 -12.64 -0.10 9.33 16 11 O -0.54 -10.08 14.36 5.26 0.08 -10.00 16 12 N -0.70 -10.43 4.97 -55.34 -0.28 -10.70 16 13 C 0.13 2.24 2.31 -68.32 -0.16 2.08 16 14 H 0.08 1.51 6.68 -51.92 -0.35 1.17 16 15 C -0.12 -1.76 5.07 -28.02 -0.14 -1.90 16 16 C -0.10 -1.43 5.16 -29.79 -0.15 -1.58 16 17 C -0.15 -2.35 5.74 -28.58 -0.16 -2.52 16 18 C 0.15 2.96 5.65 -4.09 -0.02 2.94 16 19 N -0.60 -13.61 1.97 -171.88 -0.34 -13.95 16 20 C -0.27 -7.17 9.82 -15.06 -0.15 -7.32 16 21 H 0.09 2.43 8.06 -52.49 -0.42 2.01 16 22 C 0.03 0.91 5.17 -17.43 -0.09 0.82 16 23 N -0.91 -27.13 13.97 55.49 0.78 -26.36 16 24 Si 0.88 22.80 24.06 -169.99 -4.09 18.71 16 25 H -0.29 -7.28 6.48 56.52 0.37 -6.92 16 26 H -0.30 -7.97 7.11 56.52 0.40 -7.57 16 27 H -0.27 -7.17 6.93 56.52 0.39 -6.78 16 28 C 0.12 2.65 3.58 -2.76 -0.01 2.64 16 29 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.13 1.77 6.36 -51.93 -0.33 1.44 16 36 H 0.19 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.16 1.35 7.58 -52.49 -0.40 0.95 16 38 H 0.40 4.76 7.58 -40.82 -0.31 4.45 16 39 H 0.09 1.53 7.49 -51.93 -0.39 1.14 16 40 H 0.06 0.72 7.94 -51.93 -0.41 0.30 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.71 7.35 -51.93 -0.38 0.33 16 43 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.06 1.11 7.99 -51.93 -0.41 0.70 16 46 H 0.03 0.64 8.06 -51.93 -0.42 0.22 16 47 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 48 H 0.02 0.57 6.03 -51.93 -0.31 0.26 16 49 H 0.07 1.69 5.61 -51.93 -0.29 1.40 16 LS Contribution 385.32 15.07 5.81 5.81 Total: -1.00 -32.97 385.32 -6.94 -39.91 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -7.84 Total: 4.57 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: -0.86 Total: 4.70 kcal Atomic # 7 Polarization: -58.44 SS G_CDS: 0.33 Total: -58.11 kcal Atomic # 8 Polarization: -15.29 SS G_CDS: -0.30 Total: -15.59 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -4.09 Total: 18.71 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.97 -6.94 -39.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034263621.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.995 kcal (2) G-P(sol) polarization free energy of solvation -32.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds