Wall clock time and date at job start Tue Mar 31 2020 19:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99805 * 2 1 4 4 C 1.53003 * 109.46528 * 180.02562 * 3 2 1 5 5 N 1.46504 * 109.46762 * 180.02562 * 4 3 2 6 6 N 1.28441 * 125.19268 * 267.26272 * 5 4 3 7 7 C 1.30858 * 110.92852 * 179.97438 * 6 5 4 8 8 C 1.39672 * 107.86498 * 359.77135 * 7 6 5 9 9 C 1.36606 * 125.18875 * 87.24137 * 5 4 3 10 10 C 1.47165 * 126.88162 * 359.97438 * 9 5 4 11 11 O 1.21623 * 119.99993 * 5.46447 * 10 9 5 12 12 N 1.34777 * 119.99573 * 185.46398 * 10 9 5 13 13 C 1.46500 * 119.99909 * 174.93684 * 12 10 9 14 14 H 1.09007 * 109.36223 * 35.25875 * 13 12 10 15 15 C 1.50881 * 109.36747 * 155.00101 * 13 12 10 16 16 C 1.52561 * 109.36058 * 212.08183 * 15 13 12 17 17 C 1.47099 * 114.32585 * 274.98956 * 16 15 13 18 18 C 1.54862 * 110.32478 * 62.79893 * 17 16 15 19 19 N 1.44573 * 109.60112 * 288.73936 * 18 17 16 20 20 C 1.36946 * 118.64066 * 270.70266 * 19 18 17 21 21 H 1.08001 * 119.99674 * 32.60915 * 20 19 18 22 22 C 1.38812 * 119.99884 * 212.60753 * 20 19 18 23 23 N 1.31622 * 119.99767 * 198.04899 * 22 20 19 24 24 Si 1.86803 * 119.99926 * 18.04579 * 22 20 19 25 25 H 1.48503 * 109.47075 * 275.28313 * 24 22 20 26 26 H 1.48504 * 109.46788 * 155.28906 * 24 22 20 27 27 H 1.48491 * 109.47053 * 35.28652 * 24 22 20 28 28 C 1.47601 * 122.71718 * 90.98118 * 19 18 17 29 29 H 1.09001 * 109.47154 * 59.99436 * 1 2 3 30 30 H 1.08997 * 109.47639 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.46819 * 300.00180 * 1 2 3 32 32 H 1.08998 * 109.47185 * 60.00502 * 3 2 1 33 33 H 1.08997 * 109.47241 * 299.99875 * 3 2 1 34 34 H 1.08997 * 109.47473 * 60.00715 * 4 3 2 35 35 H 1.09002 * 109.47412 * 299.99930 * 4 3 2 36 36 H 1.07999 * 126.07229 * 179.97438 * 7 6 5 37 37 H 1.07998 * 127.32733 * 180.23106 * 8 7 6 38 38 H 0.97002 * 120.00170 * 354.94678 * 12 10 9 39 39 H 1.08996 * 109.48853 * 92.11385 * 15 13 12 40 40 H 1.09004 * 109.49034 * 332.04909 * 15 13 12 41 41 H 1.08998 * 108.51600 * 153.73544 * 16 15 13 42 42 H 1.09000 * 108.39510 * 36.15048 * 16 15 13 43 43 H 1.09006 * 109.32787 * 302.53871 * 17 16 15 44 44 H 1.08997 * 109.18860 * 182.97268 * 17 16 15 45 45 H 1.08996 * 109.45340 * 168.69267 * 18 17 16 46 46 H 1.09000 * 109.42673 * 48.76133 * 18 17 16 47 47 H 0.96998 * 119.99295 * 179.97438 * 23 22 20 48 48 H 1.08997 * 108.94792 * 78.29476 * 28 19 18 49 49 H 1.09000 * 108.95168 * 196.92611 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 4.1313 2.5230 0.0000 6 7 4.4778 3.1795 -1.0482 7 6 4.9792 4.3444 -0.7256 8 6 4.9494 4.4530 0.6666 9 6 4.4029 3.2633 1.1155 10 6 4.1571 2.8762 2.5138 11 8 3.7551 1.7581 2.7736 12 7 4.3775 3.7607 3.5066 13 6 4.0286 3.4148 4.8867 14 1 4.2115 2.3527 5.0504 15 6 4.8807 4.2213 5.8354 16 6 5.1447 3.4048 7.0968 17 6 4.0850 3.4993 8.1127 18 6 2.7560 2.9295 7.5584 19 7 2.2190 3.8312 6.5640 20 6 1.3790 4.8330 6.9718 21 1 1.5129 5.2886 7.9418 22 6 0.3555 5.2627 6.1384 23 7 -0.2193 6.4279 6.3490 24 14 -0.2061 4.1874 4.7179 25 1 0.6679 4.4256 3.5411 26 1 -1.6097 4.5229 4.3679 27 1 -0.1228 2.7591 5.1153 28 6 2.5339 3.7130 5.1269 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8567 0.6440 -0.8909 35 1 3.8575 0.6435 0.8891 36 1 5.3474 5.0908 -1.4138 37 1 5.2839 5.2870 1.2656 38 1 4.7670 4.6264 3.3072 39 1 4.3593 5.1411 6.1001 40 1 5.8283 4.4653 5.3552 41 1 6.0804 3.7453 7.5400 42 1 5.2585 2.3588 6.8119 43 1 3.9423 4.5441 8.3889 44 1 4.3818 2.9306 8.9939 45 1 2.0404 2.8196 8.3731 46 1 2.9406 1.9562 7.1037 47 1 -0.9343 6.7283 5.7664 48 1 1.9357 2.9089 4.6984 49 1 2.2751 4.6479 4.6297 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034263621.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:19 Heat of formation + Delta-G solvation = 1.474979 kcal Electronic energy + Delta-G solvation = -30760.360587 eV Core-core repulsion = 26724.377997 eV Total energy + Delta-G solvation = -4035.982591 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.66020 -41.00596 -39.36256 -39.15197 -36.31531 -35.35926 -34.86935 -33.31131 -32.78425 -31.02651 -30.43423 -28.06012 -27.40946 -26.51096 -25.39408 -24.61439 -23.74983 -22.54557 -21.77159 -21.30379 -20.80400 -19.15141 -18.75702 -17.92873 -17.67052 -17.32818 -17.28497 -16.91503 -16.79491 -16.28840 -16.06931 -15.81443 -15.64291 -15.27611 -14.98783 -14.85016 -14.72157 -14.58543 -14.48009 -13.97445 -13.79652 -13.52437 -13.26022 -13.22994 -13.11889 -12.73056 -12.49261 -12.46008 -12.27413 -12.04381 -11.92967 -11.83093 -11.64381 -11.44053 -11.23826 -11.19989 -10.95789 -10.77160 -10.46818 -10.20315 -10.08344 -8.83028 -8.24133 -5.59682 0.08227 1.07689 1.17092 1.28489 1.37444 1.57761 1.91751 2.08647 2.31311 2.74981 3.01146 3.29566 3.39849 3.52519 3.66643 3.75364 3.85325 3.94877 3.98410 4.08372 4.15354 4.26212 4.30658 4.30914 4.33368 4.42286 4.46355 4.47030 4.58238 4.66768 4.71573 4.75020 4.80783 4.84660 4.94320 5.00862 5.25539 5.28231 5.32319 5.38682 5.43413 5.49527 5.60646 5.66122 5.84290 5.89560 6.14169 6.33096 6.91042 6.95347 7.01677 7.61334 7.97454 8.95824 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.010133 B = 0.004328 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2762.534835 B = 6468.512202 C = 7526.006012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.398 6.398 3 C 0.061 3.939 4 C 0.124 3.876 5 N -0.268 5.268 6 N -0.294 5.294 7 C 0.005 3.995 8 C -0.170 4.170 9 C -0.061 4.061 10 C 0.583 3.417 11 O -0.571 6.571 12 N -0.694 5.694 13 C 0.147 3.853 14 H 0.081 0.919 15 C -0.110 4.110 16 C -0.101 4.101 17 C -0.133 4.133 18 C 0.144 3.856 19 N -0.606 5.606 20 C -0.244 4.244 21 H 0.062 0.938 22 C -0.014 4.014 23 N -0.946 5.946 24 Si 0.934 3.066 25 H -0.284 1.284 26 H -0.309 1.309 27 H -0.283 1.283 28 C 0.127 3.873 29 H 0.059 0.941 30 H 0.113 0.887 31 H 0.032 0.968 32 H 0.029 0.971 33 H 0.065 0.935 34 H 0.127 0.873 35 H 0.111 0.889 36 H 0.226 0.774 37 H 0.195 0.805 38 H 0.418 0.582 39 H 0.061 0.939 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.060 0.940 43 H 0.045 0.955 44 H 0.080 0.920 45 H 0.046 0.954 46 H 0.047 0.953 47 H 0.262 0.738 48 H -0.003 1.003 49 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.518 -6.639 -12.402 19.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C -0.017 4.017 4 C 0.003 3.997 5 N -0.057 5.057 6 N -0.126 5.126 7 C -0.171 4.171 8 C -0.199 4.199 9 C -0.189 4.189 10 C 0.369 3.631 11 O -0.450 6.450 12 N -0.346 5.346 13 C 0.041 3.959 14 H 0.099 0.901 15 C -0.148 4.148 16 C -0.139 4.139 17 C -0.173 4.173 18 C 0.018 3.982 19 N -0.329 5.329 20 C -0.374 4.374 21 H 0.079 0.921 22 C -0.210 4.210 23 N -0.592 5.592 24 Si 0.765 3.235 25 H -0.211 1.211 26 H -0.238 1.238 27 H -0.210 1.210 28 C 0.001 3.999 29 H 0.078 0.922 30 H 0.131 0.869 31 H 0.051 0.949 32 H 0.047 0.953 33 H 0.084 0.916 34 H 0.145 0.855 35 H 0.129 0.871 36 H 0.243 0.757 37 H 0.212 0.788 38 H 0.256 0.744 39 H 0.080 0.920 40 H 0.113 0.887 41 H 0.098 0.902 42 H 0.079 0.921 43 H 0.064 0.936 44 H 0.098 0.902 45 H 0.064 0.936 46 H 0.065 0.935 47 H 0.071 0.929 48 H 0.014 0.986 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 12.890 -8.364 -13.148 20.223 hybrid contribution -1.113 0.841 0.005 1.395 sum 11.778 -7.523 -13.143 19.185 Atomic orbital electron populations 1.23013 0.78743 1.04696 1.00609 1.87750 1.21955 1.26330 1.95563 1.22537 0.93085 0.85770 1.00331 1.21773 0.91970 0.78607 1.07316 1.45549 1.43345 1.14717 1.02059 1.73213 1.17058 1.08658 1.13661 1.24295 1.02443 0.94877 0.95516 1.22781 1.03848 0.96978 0.96292 1.21538 1.11993 0.96244 0.89083 1.17277 0.77140 0.84596 0.84060 1.90783 1.47940 1.21653 1.84650 1.45742 1.63085 1.19291 1.06525 1.21352 0.93953 1.00578 0.79992 0.90116 1.21253 0.99085 0.99086 0.95395 1.20253 0.99006 0.99913 0.94748 1.21299 0.96033 1.01219 0.98761 1.21071 0.94540 0.91428 0.91139 1.43922 1.53213 1.33771 1.01986 1.18873 1.05692 1.09845 1.02951 0.92067 1.25806 0.97489 0.97367 1.00341 1.69901 1.28240 1.19632 1.41423 0.86212 0.76036 0.80117 0.81108 1.21140 1.23760 1.20957 1.21945 0.94866 0.97910 0.85208 0.92234 0.86858 0.94896 0.95268 0.91646 0.85539 0.87129 0.75746 0.78782 0.74407 0.92010 0.88729 0.90221 0.92131 0.93587 0.90188 0.93555 0.93454 0.92907 0.98576 0.93205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 113.37 1.25 1.79 16 2 O -0.40 -10.81 10.70 -148.98 -1.59 -12.41 16 3 C 0.06 1.68 6.26 71.98 0.45 2.13 16 4 C 0.12 3.21 6.15 86.38 0.53 3.74 16 5 N -0.27 -7.18 3.35 -334.67 -1.12 -8.30 16 6 N -0.29 -7.18 11.90 -57.14 -0.68 -7.86 16 7 C 0.00 0.09 12.03 85.18 1.02 1.11 16 8 C -0.17 -3.33 10.50 22.66 0.24 -3.09 16 9 C -0.06 -1.65 6.96 40.79 0.28 -1.37 16 10 C 0.58 18.41 7.75 86.59 0.67 19.08 16 11 O -0.57 -21.73 14.36 -4.10 -0.06 -21.79 16 12 N -0.69 -19.50 4.97 -447.24 -2.22 -21.73 16 13 C 0.15 4.81 2.31 44.74 0.10 4.91 16 14 H 0.08 2.77 6.68 -2.38 -0.02 2.75 16 15 C -0.11 -3.01 5.07 29.76 0.15 -2.86 16 16 C -0.10 -2.56 5.16 28.61 0.15 -2.41 16 17 C -0.13 -4.01 5.74 29.40 0.17 -3.84 16 18 C 0.14 5.44 5.65 87.37 0.49 5.94 16 19 N -0.61 -27.83 1.97 -697.71 -1.37 -29.20 16 20 C -0.24 -13.39 9.82 84.03 0.82 -12.57 16 21 H 0.06 3.63 8.06 -2.91 -0.02 3.61 16 22 C -0.01 -0.81 5.17 84.86 0.44 -0.38 16 23 N -0.95 -58.33 13.97 21.65 0.30 -58.03 16 24 Si 0.93 48.89 24.06 68.60 1.65 50.54 16 25 H -0.28 -14.44 6.48 99.48 0.64 -13.80 16 26 H -0.31 -16.26 7.11 99.48 0.71 -15.55 16 27 H -0.28 -15.08 6.93 99.48 0.69 -14.39 16 28 C 0.13 5.52 3.58 86.61 0.31 5.83 16 29 H 0.06 1.06 8.14 -2.39 -0.02 1.05 16 30 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.03 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 34 H 0.13 2.69 8.14 -2.39 -0.02 2.67 16 35 H 0.11 3.20 6.36 -2.39 -0.02 3.19 16 36 H 0.23 2.23 8.06 -2.91 -0.02 2.20 16 37 H 0.20 2.36 7.58 -2.91 -0.02 2.34 16 38 H 0.42 8.80 7.58 -92.71 -0.70 8.09 16 39 H 0.06 2.06 7.49 -2.39 -0.02 2.04 16 40 H 0.09 1.93 7.94 -2.39 -0.02 1.91 16 41 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.06 1.46 7.35 -2.39 -0.02 1.44 16 43 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 44 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.05 1.82 7.99 -2.39 -0.02 1.80 16 46 H 0.05 1.68 8.06 -2.39 -0.02 1.66 16 47 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 48 H 0.00 -0.17 6.03 -2.39 -0.01 -0.18 16 49 H 0.05 2.37 5.61 -2.39 -0.01 2.36 16 Total: -1.00 -74.72 385.32 2.16 -72.55 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.17 Total: 18.21 kcal Atomic # 6 Polarization: 10.93 SS G_CDS: 7.09 Total: 18.02 kcal Atomic # 7 Polarization: -120.03 SS G_CDS: -5.09 Total: -125.13 kcal Atomic # 8 Polarization: -32.54 SS G_CDS: -1.65 Total: -34.20 kcal Atomic # 14 Polarization: 48.89 SS G_CDS: 1.65 Total: 50.54 kcal Total: -74.72 2.16 -72.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034263621.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.028 kcal (2) G-P(sol) polarization free energy of solvation -74.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.553 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds