Wall clock time and date at job start Tue Mar 31 2020 19:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 114.00188 * 2 1 4 4 C 1.52990 * 109.47425 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47556 * 180.02562 * 4 3 2 6 6 C 1.35037 * 124.88734 * 124.97190 * 5 4 3 7 7 C 1.35372 * 107.22658 * 179.73087 * 6 5 4 8 8 C 1.41499 * 105.50503 * 0.41438 * 7 6 5 9 9 C 1.47708 * 126.51793 * 179.84260 * 8 7 6 10 10 O 1.21565 * 120.00083 * 359.71539 * 9 8 7 11 11 N 1.34780 * 120.00012 * 179.71501 * 9 8 7 12 12 C 1.46496 * 120.00111 * 180.02562 * 11 9 8 13 13 H 1.09001 * 108.45973 * 327.28791 * 12 11 9 14 14 C 1.52522 * 108.52485 * 209.71888 * 12 11 9 15 15 C 1.50124 * 105.41906 * 149.35148 * 14 12 11 16 16 C 1.54842 * 110.81748 * 97.67991 * 15 14 12 17 17 C 1.54400 * 110.07145 * 321.07689 * 16 15 14 18 18 N 1.43427 * 116.39212 * 318.65267 * 17 16 15 19 19 C 1.36934 * 120.53682 * 271.72869 * 18 17 16 20 20 H 1.08003 * 120.00135 * 145.95896 * 19 18 17 21 21 C 1.38810 * 119.99996 * 325.95496 * 19 18 17 22 22 N 1.31620 * 120.00163 * 331.48580 * 21 19 18 23 23 Si 1.86804 * 120.00321 * 151.48096 * 21 19 18 24 24 H 1.48497 * 109.46972 * 270.00657 * 23 21 19 25 25 H 1.48494 * 109.47349 * 150.00254 * 23 21 19 26 26 H 1.48504 * 109.46591 * 29.99908 * 23 21 19 27 27 C 1.46242 * 108.52220 * 84.99701 * 12 11 9 28 28 N 1.28476 * 124.88252 * 304.97968 * 5 4 3 29 29 H 1.08996 * 109.46745 * 59.99805 * 1 2 3 30 30 H 1.09000 * 109.46549 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47121 * 299.99882 * 1 2 3 32 32 H 1.09000 * 109.47006 * 59.99399 * 3 2 1 33 33 H 1.09006 * 109.47229 * 300.00109 * 3 2 1 34 34 H 1.09001 * 109.47427 * 60.00301 * 4 3 2 35 35 H 1.08997 * 109.47190 * 300.00032 * 4 3 2 36 36 H 1.08000 * 126.38315 * 0.02562 * 6 5 4 37 37 H 1.08003 * 127.24315 * 180.25917 * 7 6 5 38 38 H 0.97005 * 119.99877 * 359.97438 * 11 9 8 39 39 H 1.09007 * 110.24852 * 268.32473 * 14 12 11 40 40 H 1.09000 * 110.24996 * 30.23427 * 14 12 11 41 41 H 1.08994 * 109.20840 * 218.03206 * 15 14 12 42 42 H 1.08997 * 109.20190 * 337.38408 * 15 14 12 43 43 H 1.08998 * 109.35446 * 81.34462 * 16 15 14 44 44 H 1.09003 * 109.35890 * 200.92886 * 16 15 14 45 45 H 1.09001 * 107.89339 * 196.92740 * 17 16 15 46 46 H 1.09010 * 108.09974 * 80.53499 * 17 16 15 47 47 H 0.97005 * 119.99731 * 354.21973 * 22 21 19 48 48 H 1.09000 * 109.84427 * 60.14783 * 27 12 11 49 49 H 1.09000 * 109.84912 * 299.15841 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1314 2.5230 0.0013 6 6 5.0252 2.9701 0.9094 7 6 5.3395 4.2422 0.5699 8 6 4.5734 4.5257 -0.5854 9 6 4.5594 5.7947 -1.3413 10 8 5.2517 6.7258 -0.9787 11 7 3.7791 5.9202 -2.4331 12 6 3.7657 7.1785 -3.1831 13 1 3.9213 7.9993 -2.4830 14 6 2.3917 7.3461 -3.8238 15 6 2.1590 8.8279 -3.8872 16 6 2.5111 9.3806 -5.2901 17 6 3.7733 8.6778 -5.8350 18 7 4.8355 8.4574 -4.8968 19 6 5.7947 9.4135 -4.6944 20 1 6.2276 9.5450 -3.7137 21 6 6.2105 10.2137 -5.7496 22 7 6.1579 9.7566 -6.9828 23 14 6.8447 11.9396 -5.4197 24 1 5.7127 12.8996 -5.4632 25 1 7.8445 12.3059 -6.4547 26 1 7.4810 11.9850 -4.0787 27 6 4.8754 7.1636 -4.1354 28 7 3.8787 3.4402 -0.8621 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8464 -0.8900 34 1 3.8575 0.6437 -0.8891 35 1 3.8567 0.6439 0.8908 36 1 5.4196 2.4144 1.7474 37 1 6.0281 4.9027 1.0760 38 1 3.2270 5.1770 -2.7226 39 1 2.3889 6.9205 -4.8273 40 1 1.6283 6.8681 -3.2098 41 1 1.1108 9.0357 -3.6725 42 1 2.7824 9.3209 -3.1413 43 1 1.6761 9.2040 -5.9680 44 1 2.6965 10.4525 -5.2200 45 1 4.1641 9.2799 -6.6553 46 1 3.4740 7.7120 -6.2424 47 1 5.9087 8.8337 -7.1477 48 1 4.7614 6.3258 -4.8234 49 1 5.8212 7.0780 -3.6003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034305413.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:25 Heat of formation + Delta-G solvation = 29.979641 kcal Electronic energy + Delta-G solvation = -29467.533941 eV Core-core repulsion = 25432.787405 eV Total energy + Delta-G solvation = -4034.746536 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.84486 -39.63612 -38.52677 -37.67477 -34.63841 -34.28283 -33.20648 -31.22653 -30.76153 -30.13511 -29.34518 -26.90992 -26.00901 -24.71975 -24.37765 -23.09781 -22.06552 -21.57057 -20.21789 -19.89630 -18.96987 -18.10438 -17.25702 -17.05734 -16.71174 -16.43692 -16.04343 -15.83779 -15.21449 -14.79291 -14.38804 -14.29256 -14.12099 -13.92398 -13.60100 -13.55334 -13.41950 -13.24184 -12.77433 -12.52572 -12.46841 -12.24739 -12.16224 -11.90040 -11.65986 -11.09414 -11.03279 -10.65337 -10.61301 -10.31016 -10.29784 -10.14810 -10.03138 -9.93565 -9.80477 -9.64565 -9.45083 -9.24634 -9.18344 -8.77270 -8.23435 -6.75512 -5.92819 -3.25784 1.49271 1.96313 2.03474 3.23027 3.45619 3.58245 3.59679 3.61270 3.76722 4.02628 4.29098 4.51018 4.56846 4.63737 4.67716 4.79696 4.82570 5.01050 5.06787 5.15071 5.17782 5.23355 5.31800 5.45461 5.50997 5.56311 5.64506 5.65456 6.04129 6.04826 6.10912 6.23740 6.28106 6.31780 6.41061 6.52452 6.53118 6.64662 6.71055 6.78398 6.86987 6.92945 7.02233 7.15778 7.41817 7.60272 7.91353 8.19217 8.50691 8.68890 9.19539 9.91806 10.36508 11.22992 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.017645 B = 0.002486 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.515737 B =11259.114039 C =12226.376021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.390 6.390 3 C 0.050 3.950 4 C 0.126 3.874 5 N -0.286 5.286 6 C -0.017 4.017 7 C -0.177 4.177 8 C -0.004 4.004 9 C 0.596 3.404 10 O -0.526 6.526 11 N -0.716 5.716 12 C 0.134 3.866 13 H 0.088 0.912 14 C -0.117 4.117 15 C -0.106 4.106 16 C -0.138 4.138 17 C 0.137 3.863 18 N -0.580 5.580 19 C -0.344 4.344 20 H 0.053 0.947 21 C -0.021 4.021 22 N -0.904 5.904 23 Si 1.063 2.937 24 H -0.293 1.293 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.127 3.873 28 N -0.265 5.265 29 H 0.046 0.954 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.103 0.897 35 H 0.112 0.888 36 H 0.183 0.817 37 H 0.164 0.836 38 H 0.399 0.601 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.043 0.957 42 H 0.065 0.935 43 H 0.046 0.954 44 H 0.055 0.945 45 H 0.073 0.927 46 H 0.018 0.982 47 H 0.269 0.731 48 H 0.027 0.973 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.301 -19.935 15.188 27.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.028 4.028 4 C 0.005 3.995 5 N -0.075 5.075 6 C -0.159 4.159 7 C -0.205 4.205 8 C -0.165 4.165 9 C 0.379 3.621 10 O -0.400 6.400 11 N -0.367 5.367 12 C 0.030 3.970 13 H 0.106 0.894 14 C -0.155 4.155 15 C -0.144 4.144 16 C -0.179 4.179 17 C 0.009 3.991 18 N -0.302 5.302 19 C -0.473 4.473 20 H 0.071 0.929 21 C -0.224 4.224 22 N -0.543 5.543 23 Si 0.893 3.107 24 H -0.220 1.220 25 H -0.217 1.217 26 H -0.217 1.217 27 C 0.002 3.998 28 N -0.101 5.101 29 H 0.065 0.935 30 H 0.109 0.891 31 H 0.062 0.938 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.121 0.879 35 H 0.130 0.870 36 H 0.200 0.800 37 H 0.182 0.818 38 H 0.233 0.767 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.062 0.938 42 H 0.084 0.916 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.091 0.909 46 H 0.036 0.964 47 H 0.080 0.920 48 H 0.045 0.955 49 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.929 -18.566 13.958 25.670 hybrid contribution -0.505 -1.376 1.347 1.990 sum -11.434 -19.942 15.305 27.616 Atomic orbital electron populations 1.22798 0.79739 1.03202 1.00539 1.87773 1.20743 1.26711 1.95638 1.22651 0.92199 0.85575 1.02380 1.21648 0.93000 0.78672 1.06174 1.45284 1.31580 1.11474 1.19196 1.22868 0.97988 0.96706 0.98381 1.21842 1.04303 0.95979 0.98395 1.22186 1.00987 0.94045 0.99329 1.16922 0.80230 0.84780 0.80142 1.90841 1.41693 1.39032 1.68433 1.46344 1.45058 1.17497 1.27806 1.20967 0.96514 0.84986 0.94557 0.89370 1.21284 0.95175 0.98132 1.00909 1.21308 0.99349 0.94509 0.99279 1.22721 0.99006 1.00943 0.95231 1.20416 0.87386 0.97143 0.94145 1.43816 1.24847 1.13376 1.48187 1.19929 1.18470 1.13380 0.95517 0.92926 1.25847 0.98069 1.05316 0.93143 1.70742 1.44195 1.18141 1.21225 0.83550 0.76310 0.75962 0.74900 1.22018 1.21721 1.21697 1.20715 0.96584 0.89163 0.93307 1.73477 1.23134 0.97756 1.15693 0.93515 0.89086 0.93761 0.92467 0.91183 0.87903 0.86999 0.80026 0.81841 0.76737 0.91016 0.92191 0.93834 0.91608 0.93533 0.92653 0.90896 0.96408 0.92036 0.95499 0.91606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -2.81 10.70 -35.23 -0.38 -3.19 16 3 C 0.05 0.34 6.04 37.15 0.22 0.56 16 4 C 0.13 0.78 6.77 -4.05 -0.03 0.75 16 5 N -0.29 -2.70 3.41 -61.33 -0.21 -2.91 16 6 C -0.02 -0.15 11.40 -17.16 -0.20 -0.35 16 7 C -0.18 -2.16 10.81 -39.36 -0.43 -2.58 16 8 C 0.00 -0.06 7.13 -82.77 -0.59 -0.65 16 9 C 0.60 10.52 7.74 -12.39 -0.10 10.43 16 10 O -0.53 -11.32 16.46 5.31 0.09 -11.24 16 11 N -0.72 -11.65 4.87 -58.21 -0.28 -11.93 16 12 C 0.13 2.53 2.01 -71.39 -0.14 2.39 16 13 H 0.09 1.94 6.22 -51.93 -0.32 1.62 16 14 C -0.12 -1.92 5.25 -28.41 -0.15 -2.07 16 15 C -0.11 -1.90 5.65 -27.19 -0.15 -2.05 16 16 C -0.14 -2.76 6.40 -25.03 -0.16 -2.92 16 17 C 0.14 3.21 4.45 -4.93 -0.02 3.19 16 18 N -0.58 -14.73 2.37 -175.40 -0.41 -15.15 16 19 C -0.34 -9.87 9.43 -15.06 -0.14 -10.01 16 20 H 0.05 1.59 7.97 -52.48 -0.42 1.17 16 21 C -0.02 -0.60 4.82 -17.43 -0.08 -0.69 16 22 N -0.90 -27.28 12.19 55.49 0.68 -26.60 16 23 Si 1.06 26.11 30.00 -169.99 -5.10 21.01 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 27 C 0.13 2.84 5.54 -5.20 -0.03 2.81 16 28 N -0.26 -3.31 11.36 33.42 0.38 -2.93 16 29 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 34 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 35 H 0.11 0.40 8.04 -51.93 -0.42 -0.02 16 36 H 0.18 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.16 1.88 8.06 -52.48 -0.42 1.46 16 38 H 0.40 5.52 8.34 -40.82 -0.34 5.17 16 39 H 0.07 1.19 6.28 -51.92 -0.33 0.86 16 40 H 0.06 0.84 8.03 -51.93 -0.42 0.42 16 41 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 1.32 6.82 -51.93 -0.35 0.96 16 43 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.07 1.96 5.13 -51.93 -0.27 1.69 16 46 H 0.02 0.39 6.89 -51.92 -0.36 0.03 16 47 H 0.27 8.19 7.23 -40.82 -0.30 7.89 16 48 H 0.03 0.57 8.13 -51.93 -0.42 0.15 16 49 H 0.07 1.62 7.93 -51.93 -0.41 1.21 16 LS Contribution 393.48 15.07 5.93 5.93 Total: -1.00 -34.66 393.48 -7.99 -42.65 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -7.79 Total: 4.28 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -0.88 Total: 0.08 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: 0.15 Total: -59.53 kcal Atomic # 8 Polarization: -14.14 SS G_CDS: -0.29 Total: -14.43 kcal Atomic # 14 Polarization: 26.11 SS G_CDS: -5.10 Total: 21.01 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.66 -7.99 -42.65 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034305413.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.628 kcal (2) G-P(sol) polarization free energy of solvation -34.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.649 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds