Wall clock time and date at job start Tue Mar 31 2020 19:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42902 * 114.00188 * 2 1 4 4 C 1.52990 * 109.47425 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.47556 * 180.02562 * 4 3 2 6 6 C 1.35037 * 124.88734 * 124.97190 * 5 4 3 7 7 C 1.35372 * 107.22658 * 179.73087 * 6 5 4 8 8 C 1.41499 * 105.50503 * 0.41438 * 7 6 5 9 9 C 1.47708 * 126.51793 * 179.84260 * 8 7 6 10 10 O 1.21565 * 120.00083 * 359.71539 * 9 8 7 11 11 N 1.34780 * 120.00012 * 179.71501 * 9 8 7 12 12 C 1.46496 * 120.00111 * 180.02562 * 11 9 8 13 13 H 1.09001 * 108.45973 * 327.28791 * 12 11 9 14 14 C 1.52522 * 108.52485 * 209.71888 * 12 11 9 15 15 C 1.50124 * 105.41906 * 149.35148 * 14 12 11 16 16 C 1.54842 * 110.81748 * 97.67991 * 15 14 12 17 17 C 1.54400 * 110.07145 * 321.07689 * 16 15 14 18 18 N 1.43427 * 116.39212 * 318.65267 * 17 16 15 19 19 C 1.36934 * 120.53682 * 271.72869 * 18 17 16 20 20 H 1.08003 * 120.00135 * 145.95896 * 19 18 17 21 21 C 1.38810 * 119.99996 * 325.95496 * 19 18 17 22 22 N 1.31620 * 120.00163 * 331.48580 * 21 19 18 23 23 Si 1.86804 * 120.00321 * 151.48096 * 21 19 18 24 24 H 1.48497 * 109.46972 * 270.00657 * 23 21 19 25 25 H 1.48494 * 109.47349 * 150.00254 * 23 21 19 26 26 H 1.48504 * 109.46591 * 29.99908 * 23 21 19 27 27 C 1.46242 * 108.52220 * 84.99701 * 12 11 9 28 28 N 1.28476 * 124.88252 * 304.97968 * 5 4 3 29 29 H 1.08996 * 109.46745 * 59.99805 * 1 2 3 30 30 H 1.09000 * 109.46549 * 179.97438 * 1 2 3 31 31 H 1.08991 * 109.47121 * 299.99882 * 1 2 3 32 32 H 1.09000 * 109.47006 * 59.99399 * 3 2 1 33 33 H 1.09006 * 109.47229 * 300.00109 * 3 2 1 34 34 H 1.09001 * 109.47427 * 60.00301 * 4 3 2 35 35 H 1.08997 * 109.47190 * 300.00032 * 4 3 2 36 36 H 1.08000 * 126.38315 * 0.02562 * 6 5 4 37 37 H 1.08003 * 127.24315 * 180.25917 * 7 6 5 38 38 H 0.97005 * 119.99877 * 359.97438 * 11 9 8 39 39 H 1.09007 * 110.24852 * 268.32473 * 14 12 11 40 40 H 1.09000 * 110.24996 * 30.23427 * 14 12 11 41 41 H 1.08994 * 109.20840 * 218.03206 * 15 14 12 42 42 H 1.08997 * 109.20190 * 337.38408 * 15 14 12 43 43 H 1.08998 * 109.35446 * 81.34462 * 16 15 14 44 44 H 1.09003 * 109.35890 * 200.92886 * 16 15 14 45 45 H 1.09001 * 107.89339 * 196.92740 * 17 16 15 46 46 H 1.09010 * 108.09974 * 80.53499 * 17 16 15 47 47 H 0.97005 * 119.99731 * 354.21973 * 22 21 19 48 48 H 1.09000 * 109.84427 * 60.14783 * 27 12 11 49 49 H 1.09000 * 109.84912 * 299.15841 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1314 2.5230 0.0013 6 6 5.0252 2.9701 0.9094 7 6 5.3395 4.2422 0.5699 8 6 4.5734 4.5257 -0.5854 9 6 4.5594 5.7947 -1.3413 10 8 5.2517 6.7258 -0.9787 11 7 3.7791 5.9202 -2.4331 12 6 3.7657 7.1785 -3.1831 13 1 3.9213 7.9993 -2.4830 14 6 2.3917 7.3461 -3.8238 15 6 2.1590 8.8279 -3.8872 16 6 2.5111 9.3806 -5.2901 17 6 3.7733 8.6778 -5.8350 18 7 4.8355 8.4574 -4.8968 19 6 5.7947 9.4135 -4.6944 20 1 6.2276 9.5450 -3.7137 21 6 6.2105 10.2137 -5.7496 22 7 6.1579 9.7566 -6.9828 23 14 6.8447 11.9396 -5.4197 24 1 5.7127 12.8996 -5.4632 25 1 7.8445 12.3059 -6.4547 26 1 7.4810 11.9850 -4.0787 27 6 4.8754 7.1636 -4.1354 28 7 3.8787 3.4402 -0.8621 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6886 1.8464 0.8899 33 1 1.6887 1.8464 -0.8900 34 1 3.8575 0.6437 -0.8891 35 1 3.8567 0.6439 0.8908 36 1 5.4196 2.4144 1.7474 37 1 6.0281 4.9027 1.0760 38 1 3.2270 5.1770 -2.7226 39 1 2.3889 6.9205 -4.8273 40 1 1.6283 6.8681 -3.2098 41 1 1.1108 9.0357 -3.6725 42 1 2.7824 9.3209 -3.1413 43 1 1.6761 9.2040 -5.9680 44 1 2.6965 10.4525 -5.2200 45 1 4.1641 9.2799 -6.6553 46 1 3.4740 7.7120 -6.2424 47 1 5.9087 8.8337 -7.1477 48 1 4.7614 6.3258 -4.8234 49 1 5.8212 7.0780 -3.6003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034305413.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:23 Heat of formation + Delta-G solvation = 5.446844 kcal Electronic energy + Delta-G solvation = -29468.597763 eV Core-core repulsion = 25432.787405 eV Total energy + Delta-G solvation = -4035.810358 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.70667 -41.13824 -39.34833 -38.97583 -36.42472 -35.06498 -34.82543 -32.92262 -32.03564 -31.38970 -30.30402 -27.98956 -27.34726 -26.14408 -25.74002 -24.47358 -23.20558 -22.42625 -21.83209 -21.22963 -20.58336 -19.21087 -18.93306 -18.01836 -17.51295 -17.39461 -17.03413 -16.71412 -16.38043 -16.24507 -15.92053 -15.60844 -15.56341 -15.36585 -15.02420 -14.75689 -14.57821 -14.26933 -14.24493 -14.07290 -13.93755 -13.29246 -13.02732 -12.89006 -12.64317 -12.62459 -12.41624 -12.33875 -12.00425 -11.95108 -11.90585 -11.88790 -11.65853 -11.36151 -11.28346 -11.10815 -10.78108 -10.56822 -10.36303 -10.17152 -10.03097 -8.91273 -8.15559 -5.51901 0.46193 1.14460 1.29830 1.55165 1.61923 1.80962 2.07645 2.34558 2.62794 2.77541 3.15389 3.33207 3.53678 3.63443 3.78453 3.82121 3.96129 4.01679 4.11686 4.15363 4.21615 4.35177 4.42769 4.45087 4.48086 4.49013 4.57860 4.61633 4.65385 4.72216 4.73703 4.77401 4.84220 4.91866 4.94464 5.10993 5.18439 5.25846 5.31592 5.39065 5.39510 5.49733 5.55222 5.78999 5.88776 6.00908 6.38948 6.43404 6.85287 7.06932 7.17673 7.76040 8.19606 8.92000 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.017645 B = 0.002486 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.515737 B =11259.114039 C =12226.376021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.053 3.947 4 C 0.121 3.879 5 N -0.275 5.275 6 C 0.013 3.987 7 C -0.205 4.205 8 C -0.038 4.038 9 C 0.593 3.407 10 O -0.577 6.577 11 N -0.703 5.703 12 C 0.147 3.853 13 H 0.053 0.947 14 C -0.105 4.105 15 C -0.101 4.101 16 C -0.132 4.132 17 C 0.138 3.862 18 N -0.596 5.596 19 C -0.352 4.352 20 H 0.026 0.974 21 C -0.064 4.064 22 N -0.920 5.920 23 Si 1.109 2.891 24 H -0.279 1.279 25 H -0.288 1.288 26 H -0.282 1.282 27 C 0.135 3.865 28 N -0.270 5.270 29 H 0.046 0.954 30 H 0.104 0.896 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.108 0.892 35 H 0.148 0.852 36 H 0.233 0.767 37 H 0.160 0.840 38 H 0.414 0.586 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.079 0.921 42 H 0.035 0.965 43 H 0.080 0.920 44 H 0.033 0.967 45 H 0.038 0.962 46 H 0.034 0.966 47 H 0.256 0.744 48 H 0.039 0.961 49 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.346 -22.314 16.553 30.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.025 4.025 4 C 0.002 3.998 5 N -0.065 5.065 6 C -0.130 4.130 7 C -0.234 4.234 8 C -0.197 4.197 9 C 0.379 3.621 10 O -0.455 6.455 11 N -0.355 5.355 12 C 0.042 3.958 13 H 0.071 0.929 14 C -0.143 4.143 15 C -0.139 4.139 16 C -0.172 4.172 17 C 0.010 3.990 18 N -0.319 5.319 19 C -0.482 4.482 20 H 0.044 0.956 21 C -0.262 4.262 22 N -0.561 5.561 23 Si 0.933 3.067 24 H -0.205 1.205 25 H -0.214 1.214 26 H -0.208 1.208 27 C 0.011 3.989 28 N -0.107 5.107 29 H 0.065 0.935 30 H 0.123 0.877 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.127 0.873 35 H 0.166 0.834 36 H 0.249 0.751 37 H 0.178 0.822 38 H 0.251 0.749 39 H 0.097 0.903 40 H 0.114 0.886 41 H 0.098 0.902 42 H 0.054 0.946 43 H 0.098 0.902 44 H 0.052 0.948 45 H 0.056 0.944 46 H 0.052 0.948 47 H 0.066 0.934 48 H 0.057 0.943 49 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -13.030 -20.998 15.315 29.073 hybrid contribution 0.103 -0.831 0.970 1.281 sum -12.927 -21.829 16.285 30.146 Atomic orbital electron populations 1.22967 0.78739 1.04286 1.00915 1.87749 1.21899 1.26756 1.95683 1.22574 0.92592 0.85485 1.01834 1.21997 0.92563 0.76938 1.08313 1.45668 1.30867 1.11807 1.18192 1.23491 0.95880 0.95323 0.98276 1.22023 1.05084 0.97880 0.98368 1.21774 1.03630 0.93581 1.00668 1.17416 0.79136 0.85486 0.80109 1.90803 1.43704 1.41191 1.69809 1.46120 1.45044 1.17052 1.27281 1.20526 0.97048 0.85123 0.93080 0.92911 1.21247 0.93904 0.97502 1.01617 1.21255 1.00857 0.94992 0.96818 1.22623 0.98125 0.99207 0.97267 1.20443 0.88019 0.97661 0.92859 1.43941 1.25165 1.13863 1.48885 1.19914 1.19208 1.14753 0.94319 0.95635 1.27088 0.98212 1.08280 0.92655 1.70854 1.45964 1.17437 1.21809 0.82940 0.76352 0.72262 0.75107 1.20506 1.21377 1.20799 1.20667 0.96415 0.88311 0.93549 1.73405 1.22975 0.97700 1.16642 0.93508 0.87739 0.93040 0.92237 0.92603 0.87336 0.83370 0.75069 0.82239 0.74929 0.90300 0.88631 0.90207 0.94605 0.90187 0.94771 0.94423 0.94803 0.93443 0.94261 0.95278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.40 -4.78 10.70 -148.98 -1.59 -6.37 16 3 C 0.05 0.58 6.04 71.98 0.43 1.01 16 4 C 0.12 1.06 6.77 86.38 0.58 1.64 16 5 N -0.28 -4.41 3.41 -347.96 -1.19 -5.60 16 6 C 0.01 0.18 11.40 83.54 0.95 1.13 16 7 C -0.21 -4.86 10.81 22.41 0.24 -4.62 16 8 C -0.04 -1.10 7.13 42.45 0.30 -0.79 16 9 C 0.59 21.83 7.74 86.75 0.67 22.50 16 10 O -0.58 -26.66 16.46 -3.92 -0.06 -26.72 16 11 N -0.70 -23.16 4.87 -456.35 -2.22 -25.38 16 12 C 0.15 5.69 2.01 42.75 0.09 5.77 16 13 H 0.05 2.45 6.22 -2.39 -0.01 2.44 16 14 C -0.11 -3.24 5.25 29.51 0.16 -3.09 16 15 C -0.10 -3.46 5.65 30.30 0.17 -3.29 16 16 C -0.13 -5.14 6.40 31.70 0.20 -4.94 16 17 C 0.14 6.52 4.45 87.42 0.39 6.91 16 18 N -0.60 -31.45 2.37 -708.84 -1.68 -33.12 16 19 C -0.35 -21.20 9.43 84.03 0.79 -20.41 16 20 H 0.03 1.66 7.97 -2.91 -0.02 1.63 16 21 C -0.06 -3.81 4.82 84.86 0.41 -3.40 16 22 N -0.92 -57.20 12.19 21.65 0.26 -56.93 16 23 Si 1.11 54.02 30.00 68.60 2.06 56.08 16 24 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 25 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 26 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 27 C 0.14 6.29 5.54 83.58 0.46 6.75 16 28 N -0.27 -6.36 11.36 -48.18 -0.55 -6.91 16 29 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.10 0.50 8.14 -2.39 -0.02 0.49 16 31 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.06 0.77 8.09 -2.38 -0.02 0.75 16 34 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.15 0.29 8.04 -2.39 -0.02 0.27 16 36 H 0.23 0.84 8.06 -2.91 -0.02 0.82 16 37 H 0.16 3.77 8.06 -2.91 -0.02 3.74 16 38 H 0.41 11.05 8.34 -92.70 -0.77 10.28 16 39 H 0.08 2.38 6.28 -2.38 -0.01 2.37 16 40 H 0.10 2.33 8.03 -2.39 -0.02 2.31 16 41 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 42 H 0.04 1.44 6.82 -2.39 -0.02 1.43 16 43 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 44 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.04 2.08 5.13 -2.39 -0.01 2.07 16 46 H 0.03 1.46 6.89 -2.38 -0.02 1.45 16 47 H 0.26 16.17 7.23 -92.70 -0.67 15.50 16 48 H 0.04 1.71 8.13 -2.39 -0.02 1.69 16 49 H 0.03 1.53 7.93 -2.39 -0.02 1.51 16 Total: -1.00 -81.50 393.48 2.42 -79.08 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: 0.28 Total: 19.23 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: 7.11 Total: 6.64 kcal Atomic # 7 Polarization: -122.57 SS G_CDS: -5.37 Total: -127.94 kcal Atomic # 8 Polarization: -31.43 SS G_CDS: -1.66 Total: -33.09 kcal Atomic # 14 Polarization: 54.02 SS G_CDS: 2.06 Total: 56.08 kcal Total: -81.50 2.42 -79.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034305413.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.529 kcal (2) G-P(sol) polarization free energy of solvation -81.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds