Wall clock time and date at job start Tue Mar 31 2020 19:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99732 * 2 1 4 4 C 1.52999 * 109.46949 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47185 * 180.02562 * 4 3 2 6 6 C 1.35032 * 124.88466 * 124.99632 * 5 4 3 7 7 C 1.35368 * 107.23064 * 180.02562 * 6 5 4 8 8 C 1.41505 * 105.49911 * 0.02562 * 7 6 5 9 9 C 1.47714 * 126.51326 * 179.97438 * 8 7 6 10 10 O 1.21571 * 120.00188 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99513 * 179.97438 * 9 8 7 12 12 C 1.46506 * 119.99700 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.26212 * 35.32174 * 12 11 9 14 14 C 1.50880 * 109.36519 * 155.00353 * 12 11 9 15 15 C 1.52572 * 109.37691 * 212.08758 * 14 12 11 16 16 C 1.47096 * 114.32262 * 274.97651 * 15 14 12 17 17 C 1.54856 * 110.32493 * 62.80113 * 16 15 14 18 18 N 1.44575 * 109.60006 * 288.73174 * 17 16 15 19 19 C 1.36943 * 118.64749 * 270.72649 * 18 17 16 20 20 H 1.07998 * 119.99268 * 26.49404 * 19 18 17 21 21 C 1.38808 * 120.00358 * 206.49310 * 19 18 17 22 22 N 1.31621 * 119.99870 * 15.67235 * 21 19 18 23 23 Si 1.86795 * 120.00070 * 195.67173 * 21 19 18 24 24 H 1.48498 * 109.47259 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47278 * 120.00363 * 23 21 19 26 26 H 1.48504 * 109.47119 * 240.00308 * 23 21 19 27 27 C 1.47607 * 122.71574 * 90.70335 * 18 17 16 28 28 N 1.28469 * 124.88540 * 305.32829 * 5 4 3 29 29 H 1.09005 * 109.47173 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47604 * 299.99906 * 1 2 3 31 31 H 1.09002 * 109.47724 * 60.00121 * 1 2 3 32 32 H 1.08995 * 109.46937 * 60.00317 * 3 2 1 33 33 H 1.08998 * 109.47277 * 300.00063 * 3 2 1 34 34 H 1.09001 * 109.47124 * 59.99879 * 4 3 2 35 35 H 1.08998 * 109.47060 * 300.00046 * 4 3 2 36 36 H 1.07998 * 126.39102 * 0.02562 * 6 5 4 37 37 H 1.07994 * 127.25201 * 179.97438 * 7 6 5 38 38 H 0.96998 * 120.00225 * 0.02562 * 11 9 8 39 39 H 1.08994 * 109.49451 * 92.10825 * 14 12 11 40 40 H 1.09006 * 109.49183 * 332.05997 * 14 12 11 41 41 H 1.09001 * 108.51055 * 36.22257 * 15 14 12 42 42 H 1.08995 * 108.51595 * 153.71793 * 15 14 12 43 43 H 1.09002 * 109.32299 * 183.05992 * 16 15 14 44 44 H 1.09000 * 109.32704 * 302.70955 * 16 15 14 45 45 H 1.09001 * 109.45355 * 48.76957 * 17 16 15 46 46 H 1.09004 * 109.45212 * 168.69595 * 17 16 15 47 47 H 0.97000 * 120.00069 * 179.97438 * 22 21 19 48 48 H 1.09005 * 108.94477 * 78.57292 * 27 18 17 49 49 H 1.08999 * 108.95084 * 197.20293 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1312 2.5230 0.0000 6 6 5.0260 2.9696 0.9073 7 6 5.3350 4.2442 0.5720 8 6 4.5714 4.5265 -0.5853 9 6 4.5556 5.7963 -1.3398 10 8 5.2480 6.7275 -0.9772 11 7 3.7742 5.9222 -2.4307 12 6 3.7589 7.1815 -3.1793 13 1 4.7572 7.6189 -3.1676 14 6 3.3479 6.9106 -4.6055 15 6 4.0461 7.9029 -5.5306 16 6 3.3513 9.1917 -5.6718 17 6 3.2868 9.9203 -4.3068 18 7 2.3558 9.2379 -3.4364 19 6 1.0382 9.6099 -3.4636 20 1 0.6197 10.0495 -4.3569 21 6 0.2406 9.4220 -2.3432 22 7 0.7947 9.1831 -1.1735 23 14 -1.6192 9.5083 -2.4955 24 1 -1.9878 9.7879 -3.9066 25 1 -2.2108 8.2124 -2.0763 26 1 -2.1374 10.5938 -1.6247 27 6 2.7668 8.1564 -2.5197 28 7 3.8731 3.4427 -0.8591 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8567 0.6439 -0.8909 35 1 3.8574 0.6436 0.8891 36 1 5.4215 2.4136 1.7445 37 1 6.0195 4.9064 1.0811 38 1 3.2220 5.1791 -2.7202 39 1 2.2679 7.0229 -4.7004 40 1 3.6334 5.8950 -4.8797 41 1 5.0479 8.0903 -5.1443 42 1 4.1388 7.4497 -6.5176 43 1 3.8878 9.8141 -6.3880 44 1 2.3379 9.0176 -6.0332 45 1 4.2763 9.9227 -3.8495 46 1 2.9553 10.9475 -4.4590 47 1 0.2374 9.0522 -0.3905 48 1 3.2360 8.5972 -1.6401 49 1 1.8818 7.6024 -2.2066 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034305414.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:29 Heat of formation + Delta-G solvation = 24.981050 kcal Electronic energy + Delta-G solvation = -29758.744340 eV Core-core repulsion = 25723.781049 eV Total energy + Delta-G solvation = -4034.963291 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.69529 -39.25020 -38.36316 -37.48103 -34.29661 -34.13301 -33.46647 -31.00231 -30.67548 -30.14782 -29.26692 -26.75708 -26.00125 -24.65998 -24.09569 -23.07389 -21.98764 -21.42939 -20.10806 -19.57062 -19.09348 -17.91638 -17.05410 -16.57925 -16.55892 -16.28582 -15.82956 -15.51564 -15.25449 -14.98836 -14.26904 -14.23831 -14.00187 -13.75388 -13.55631 -13.34184 -13.28212 -13.08707 -12.60546 -12.39692 -12.35167 -12.02851 -12.00706 -11.74739 -11.26265 -11.09100 -10.96721 -10.88796 -10.66284 -10.38150 -10.18347 -10.15033 -10.10393 -9.89411 -9.73445 -9.63276 -9.41998 -9.30068 -9.09672 -8.44253 -8.30484 -6.58573 -5.70795 -3.15688 1.65184 2.10187 2.19760 3.37787 3.38975 3.46397 3.48560 3.62208 3.81816 4.16600 4.44666 4.54198 4.67807 4.70191 4.79257 4.96152 4.98887 5.17770 5.22230 5.29959 5.31055 5.39577 5.40799 5.52837 5.65036 5.70241 5.77336 5.80576 5.99546 6.09992 6.28150 6.39028 6.40423 6.55009 6.55822 6.67472 6.69169 6.72391 6.73976 6.87447 6.98280 7.05354 7.17183 7.46710 7.77813 7.83755 7.90248 8.11331 8.52914 8.69667 9.29789 9.97358 10.42718 11.35286 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.009576 B = 0.003354 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.371748 B = 8346.110238 C = 9823.455926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.391 6.391 3 C 0.048 3.952 4 C 0.127 3.873 5 N -0.287 5.287 6 C -0.019 4.019 7 C -0.177 4.177 8 C -0.002 4.002 9 C 0.600 3.400 10 O -0.531 6.531 11 N -0.703 5.703 12 C 0.120 3.880 13 H 0.074 0.926 14 C -0.115 4.115 15 C -0.098 4.098 16 C -0.147 4.147 17 C 0.154 3.846 18 N -0.587 5.587 19 C -0.257 4.257 20 H 0.066 0.934 21 C 0.004 3.996 22 N -0.899 5.899 23 Si 0.897 3.103 24 H -0.278 1.278 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.175 3.825 28 N -0.264 5.264 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.058 0.942 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.111 0.889 36 H 0.182 0.818 37 H 0.163 0.837 38 H 0.400 0.600 39 H 0.080 0.920 40 H 0.051 0.949 41 H 0.049 0.951 42 H 0.044 0.956 43 H 0.047 0.953 44 H 0.060 0.940 45 H 0.033 0.967 46 H 0.046 0.954 47 H 0.252 0.748 48 H 0.032 0.968 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.587 -18.934 1.536 19.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.310 6.310 3 C -0.030 4.030 4 C 0.007 3.993 5 N -0.076 5.076 6 C -0.161 4.161 7 C -0.205 4.205 8 C -0.163 4.163 9 C 0.383 3.617 10 O -0.406 6.406 11 N -0.353 5.353 12 C 0.015 3.985 13 H 0.092 0.908 14 C -0.153 4.153 15 C -0.136 4.136 16 C -0.188 4.188 17 C 0.026 3.974 18 N -0.309 5.309 19 C -0.387 4.387 20 H 0.084 0.916 21 C -0.194 4.194 22 N -0.543 5.543 23 Si 0.728 3.272 24 H -0.203 1.203 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.049 3.951 28 N -0.099 5.099 29 H 0.108 0.892 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.120 0.880 35 H 0.129 0.871 36 H 0.199 0.801 37 H 0.181 0.819 38 H 0.234 0.766 39 H 0.099 0.901 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.079 0.921 45 H 0.051 0.949 46 H 0.064 0.936 47 H 0.062 0.938 48 H 0.050 0.950 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.297 -18.987 1.209 19.749 hybrid contribution -1.002 0.052 0.580 1.159 sum 4.295 -18.935 1.789 19.498 Atomic orbital electron populations 1.22798 0.79730 1.03066 1.00715 1.87748 1.20756 1.26780 1.95677 1.22673 0.92130 0.85520 1.02657 1.21625 0.93073 0.78683 1.05957 1.45279 1.31375 1.11369 1.19597 1.22840 0.98188 0.96722 0.98347 1.21820 1.04611 0.95792 0.98309 1.22186 1.00644 0.94058 0.99389 1.16843 0.80185 0.84579 0.80095 1.90794 1.43013 1.39131 1.67623 1.46000 1.44508 1.16687 1.28130 1.21806 1.01734 0.84258 0.90742 0.90760 1.21274 1.02710 0.97614 0.93731 1.20215 0.99087 0.96206 0.98094 1.21503 1.00297 0.96506 1.00473 1.20739 0.92945 0.94451 0.89257 1.43548 1.05101 1.36736 1.45482 1.19235 0.85553 1.37671 0.96263 0.91594 1.25049 0.98134 1.01367 0.94889 1.70109 1.33501 1.52622 0.98054 0.86297 0.86265 0.77176 0.77498 1.20266 1.21786 1.21776 1.21309 0.95811 0.87592 0.90414 1.73490 1.22525 0.97827 1.16094 0.89180 0.93696 0.93450 0.92325 0.91060 0.88036 0.87103 0.80121 0.81900 0.76583 0.90091 0.93068 0.93198 0.93749 0.93456 0.92107 0.94875 0.93591 0.93814 0.94963 0.90499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -3.48 10.70 -35.23 -0.38 -3.85 16 3 C 0.05 0.42 6.04 37.16 0.22 0.65 16 4 C 0.13 0.97 6.77 -4.04 -0.03 0.94 16 5 N -0.29 -3.15 3.41 -61.33 -0.21 -3.35 16 6 C -0.02 -0.19 11.40 -17.17 -0.20 -0.39 16 7 C -0.18 -2.39 10.81 -39.36 -0.43 -2.82 16 8 C 0.00 -0.03 7.13 -82.76 -0.59 -0.62 16 9 C 0.60 11.60 7.78 -12.39 -0.10 11.50 16 10 O -0.53 -11.99 16.59 5.30 0.09 -11.90 16 11 N -0.70 -12.91 4.98 -55.35 -0.28 -13.18 16 12 C 0.12 2.40 2.27 -68.50 -0.16 2.25 16 13 H 0.07 1.58 6.75 -51.93 -0.35 1.23 16 14 C -0.12 -2.03 5.06 -28.01 -0.14 -2.17 16 15 C -0.10 -1.62 5.15 -29.78 -0.15 -1.78 16 16 C -0.15 -2.64 5.74 -28.59 -0.16 -2.80 16 17 C 0.15 3.30 5.66 -4.09 -0.02 3.28 16 18 N -0.59 -14.75 2.27 -172.09 -0.39 -15.14 16 19 C -0.26 -7.03 9.44 -15.06 -0.14 -7.18 16 20 H 0.07 1.78 7.88 -52.49 -0.41 1.36 16 21 C 0.00 0.12 4.87 -17.43 -0.08 0.04 16 22 N -0.90 -26.65 11.01 55.49 0.61 -26.04 16 23 Si 0.90 21.84 29.58 -169.99 -5.03 16.81 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 27 C 0.17 4.35 4.25 -2.94 -0.01 4.34 16 28 N -0.26 -3.77 11.35 33.42 0.38 -3.39 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 34 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.11 0.54 8.04 -51.93 -0.42 0.12 16 36 H 0.18 1.03 8.06 -52.49 -0.42 0.61 16 37 H 0.16 2.05 8.06 -52.49 -0.42 1.63 16 38 H 0.40 6.54 8.27 -40.82 -0.34 6.21 16 39 H 0.08 1.60 7.48 -51.93 -0.39 1.21 16 40 H 0.05 0.78 7.94 -51.93 -0.41 0.37 16 41 H 0.05 0.82 7.36 -51.93 -0.38 0.43 16 42 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.03 0.70 8.07 -51.93 -0.42 0.28 16 46 H 0.05 0.99 7.99 -51.93 -0.41 0.58 16 47 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 48 H 0.03 0.93 8.03 -51.93 -0.42 0.51 16 49 H 0.08 2.11 6.31 -51.93 -0.33 1.78 16 LS Contribution 396.35 15.07 5.97 5.97 Total: -1.00 -33.93 396.35 -8.17 -42.10 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -8.06 Total: 5.39 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -0.88 Total: 6.58 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: 0.11 Total: -61.10 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.29 Total: -15.75 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.93 -8.17 -42.10 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034305414.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.079 kcal (2) G-P(sol) polarization free energy of solvation -33.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds