Wall clock time and date at job start Tue Mar 31 2020 19:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42902 * 113.99732 * 2 1 4 4 C 1.52999 * 109.46949 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47185 * 180.02562 * 4 3 2 6 6 C 1.35032 * 124.88466 * 124.99632 * 5 4 3 7 7 C 1.35368 * 107.23064 * 180.02562 * 6 5 4 8 8 C 1.41505 * 105.49911 * 0.02562 * 7 6 5 9 9 C 1.47714 * 126.51326 * 179.97438 * 8 7 6 10 10 O 1.21571 * 120.00188 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99513 * 179.97438 * 9 8 7 12 12 C 1.46506 * 119.99700 * 180.02562 * 11 9 8 13 13 H 1.08996 * 109.26212 * 35.32174 * 12 11 9 14 14 C 1.50880 * 109.36519 * 155.00353 * 12 11 9 15 15 C 1.52572 * 109.37691 * 212.08758 * 14 12 11 16 16 C 1.47096 * 114.32262 * 274.97651 * 15 14 12 17 17 C 1.54856 * 110.32493 * 62.80113 * 16 15 14 18 18 N 1.44575 * 109.60006 * 288.73174 * 17 16 15 19 19 C 1.36943 * 118.64749 * 270.72649 * 18 17 16 20 20 H 1.07998 * 119.99268 * 26.49404 * 19 18 17 21 21 C 1.38808 * 120.00358 * 206.49310 * 19 18 17 22 22 N 1.31621 * 119.99870 * 15.67235 * 21 19 18 23 23 Si 1.86795 * 120.00070 * 195.67173 * 21 19 18 24 24 H 1.48498 * 109.47259 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47278 * 120.00363 * 23 21 19 26 26 H 1.48504 * 109.47119 * 240.00308 * 23 21 19 27 27 C 1.47607 * 122.71574 * 90.70335 * 18 17 16 28 28 N 1.28469 * 124.88540 * 305.32829 * 5 4 3 29 29 H 1.09005 * 109.47173 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47604 * 299.99906 * 1 2 3 31 31 H 1.09002 * 109.47724 * 60.00121 * 1 2 3 32 32 H 1.08995 * 109.46937 * 60.00317 * 3 2 1 33 33 H 1.08998 * 109.47277 * 300.00063 * 3 2 1 34 34 H 1.09001 * 109.47124 * 59.99879 * 4 3 2 35 35 H 1.08998 * 109.47060 * 300.00046 * 4 3 2 36 36 H 1.07998 * 126.39102 * 0.02562 * 6 5 4 37 37 H 1.07994 * 127.25201 * 179.97438 * 7 6 5 38 38 H 0.96998 * 120.00225 * 0.02562 * 11 9 8 39 39 H 1.08994 * 109.49451 * 92.10825 * 14 12 11 40 40 H 1.09006 * 109.49183 * 332.05997 * 14 12 11 41 41 H 1.09001 * 108.51055 * 36.22257 * 15 14 12 42 42 H 1.08995 * 108.51595 * 153.71793 * 15 14 12 43 43 H 1.09002 * 109.32299 * 183.05992 * 16 15 14 44 44 H 1.09000 * 109.32704 * 302.70955 * 16 15 14 45 45 H 1.09001 * 109.45355 * 48.76957 * 17 16 15 46 46 H 1.09004 * 109.45212 * 168.69595 * 17 16 15 47 47 H 0.97000 * 120.00069 * 179.97438 * 22 21 19 48 48 H 1.09005 * 108.94477 * 78.57292 * 27 18 17 49 49 H 1.08999 * 108.95084 * 197.20293 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1312 2.5230 0.0000 6 6 5.0260 2.9696 0.9073 7 6 5.3350 4.2442 0.5720 8 6 4.5714 4.5265 -0.5853 9 6 4.5556 5.7963 -1.3398 10 8 5.2480 6.7275 -0.9772 11 7 3.7742 5.9222 -2.4307 12 6 3.7589 7.1815 -3.1793 13 1 4.7572 7.6189 -3.1676 14 6 3.3479 6.9106 -4.6055 15 6 4.0461 7.9029 -5.5306 16 6 3.3513 9.1917 -5.6718 17 6 3.2868 9.9203 -4.3068 18 7 2.3558 9.2379 -3.4364 19 6 1.0382 9.6099 -3.4636 20 1 0.6197 10.0495 -4.3569 21 6 0.2406 9.4220 -2.3432 22 7 0.7947 9.1831 -1.1735 23 14 -1.6192 9.5083 -2.4955 24 1 -1.9878 9.7879 -3.9066 25 1 -2.2108 8.2124 -2.0763 26 1 -2.1374 10.5938 -1.6247 27 6 2.7668 8.1564 -2.5197 28 7 3.8731 3.4427 -0.8591 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6885 1.8464 -0.8900 34 1 3.8567 0.6439 -0.8909 35 1 3.8574 0.6436 0.8891 36 1 5.4215 2.4136 1.7445 37 1 6.0195 4.9064 1.0811 38 1 3.2220 5.1791 -2.7202 39 1 2.2679 7.0229 -4.7004 40 1 3.6334 5.8950 -4.8797 41 1 5.0479 8.0903 -5.1443 42 1 4.1388 7.4497 -6.5176 43 1 3.8878 9.8141 -6.3880 44 1 2.3379 9.0176 -6.0332 45 1 4.2763 9.9227 -3.8495 46 1 2.9553 10.9475 -4.4590 47 1 0.2374 9.0522 -0.3905 48 1 3.2360 8.5972 -1.6401 49 1 1.8818 7.6024 -2.2066 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034305414.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:28 Heat of formation + Delta-G solvation = 1.210243 kcal Electronic energy + Delta-G solvation = -29759.775120 eV Core-core repulsion = 25723.781049 eV Total energy + Delta-G solvation = -4035.994070 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.67953 -40.83307 -39.19569 -38.97442 -36.05885 -35.21521 -34.96728 -32.70417 -32.12266 -31.40577 -30.30265 -27.97969 -27.38142 -26.06190 -25.63120 -24.50135 -23.17099 -22.40819 -21.60687 -21.10844 -20.65996 -18.91018 -18.59781 -17.97953 -17.45343 -17.25574 -17.06749 -16.94174 -16.65659 -16.05470 -15.88062 -15.62969 -15.44867 -15.11068 -14.92073 -14.73792 -14.45952 -14.22102 -14.09967 -13.93235 -13.76228 -13.03000 -13.01628 -12.95685 -12.85479 -12.64845 -12.43366 -12.36544 -12.20321 -12.06296 -11.92043 -11.86976 -11.56010 -11.40477 -11.20785 -11.12839 -10.80841 -10.51425 -10.33839 -10.12817 -9.95301 -8.66737 -7.84562 -5.33374 0.49780 1.16023 1.34359 1.43371 1.44802 1.56162 2.14895 2.40487 2.51559 2.75718 3.27395 3.37199 3.64896 3.79193 3.81612 3.92221 3.98260 4.06184 4.14332 4.20976 4.29279 4.42154 4.43194 4.45852 4.46331 4.60657 4.62864 4.65049 4.74545 4.76552 4.81199 4.84366 4.95196 5.07405 5.13618 5.28412 5.30659 5.31545 5.38290 5.45690 5.55050 5.63260 5.69343 5.79311 5.82097 5.97898 6.38768 6.48430 6.88025 7.14649 7.22098 7.92532 8.33843 9.19782 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.009576 B = 0.003354 C = 0.002850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.371748 B = 8346.110238 C = 9823.455926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.050 3.950 4 C 0.124 3.876 5 N -0.277 5.277 6 C 0.013 3.987 7 C -0.204 4.204 8 C -0.038 4.038 9 C 0.594 3.406 10 O -0.575 6.575 11 N -0.698 5.698 12 C 0.135 3.865 13 H 0.063 0.937 14 C -0.106 4.106 15 C -0.099 4.099 16 C -0.132 4.132 17 C 0.145 3.855 18 N -0.601 5.601 19 C -0.260 4.260 20 H 0.072 0.928 21 C -0.052 4.052 22 N -0.938 5.938 23 Si 0.965 3.035 24 H -0.261 1.261 25 H -0.292 1.292 26 H -0.295 1.295 27 C 0.198 3.802 28 N -0.275 5.275 29 H 0.109 0.891 30 H 0.048 0.952 31 H 0.043 0.957 32 H 0.054 0.946 33 H 0.051 0.949 34 H 0.113 0.887 35 H 0.151 0.849 36 H 0.235 0.765 37 H 0.163 0.837 38 H 0.410 0.590 39 H 0.060 0.940 40 H 0.082 0.918 41 H 0.053 0.947 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.050 0.950 45 H 0.030 0.970 46 H 0.040 0.960 47 H 0.245 0.755 48 H -0.025 1.025 49 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.761 -21.746 0.446 22.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C -0.028 4.028 4 C 0.005 3.995 5 N -0.067 5.067 6 C -0.130 4.130 7 C -0.232 4.232 8 C -0.197 4.197 9 C 0.380 3.620 10 O -0.453 6.453 11 N -0.348 5.348 12 C 0.030 3.970 13 H 0.081 0.919 14 C -0.144 4.144 15 C -0.137 4.137 16 C -0.172 4.172 17 C 0.018 3.982 18 N -0.323 5.323 19 C -0.390 4.390 20 H 0.090 0.910 21 C -0.247 4.247 22 N -0.584 5.584 23 Si 0.793 3.207 24 H -0.185 1.185 25 H -0.219 1.219 26 H -0.222 1.222 27 C 0.071 3.929 28 N -0.112 5.112 29 H 0.127 0.873 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.131 0.869 35 H 0.168 0.832 36 H 0.251 0.749 37 H 0.180 0.820 38 H 0.247 0.753 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.072 0.928 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.069 0.931 45 H 0.049 0.951 46 H 0.058 0.942 47 H 0.054 0.946 48 H -0.007 1.007 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.465 -21.816 0.058 22.490 hybrid contribution -1.049 0.877 0.976 1.680 sum 4.416 -20.939 1.034 21.425 Atomic orbital electron populations 1.22968 0.78906 1.04356 1.00723 1.87731 1.21709 1.26501 1.95655 1.22589 0.93174 0.85502 1.01509 1.21985 0.91974 0.76991 1.08549 1.45679 1.30700 1.11695 1.18616 1.23512 0.95942 0.95349 0.98171 1.22031 1.05353 0.97728 0.98092 1.21826 1.03345 0.93613 1.00926 1.17374 0.79269 0.85456 0.79879 1.90750 1.44800 1.41055 1.68708 1.45914 1.44577 1.16266 1.28062 1.21432 0.99363 0.83989 0.92266 0.91877 1.21212 1.01458 0.99934 0.91839 1.20232 0.98643 0.95302 0.99545 1.21320 1.00478 0.97289 0.98065 1.20973 0.91898 0.94524 0.90775 1.43755 1.05265 1.37454 1.45822 1.19585 0.86631 1.36625 0.96203 0.91004 1.25840 1.02517 1.01823 0.94516 1.70316 1.34810 1.54569 0.98717 0.85236 0.80808 0.76636 0.77987 1.18541 1.21903 1.22213 1.20876 0.94841 0.87892 0.89291 1.73417 1.22475 0.97966 1.17336 0.87305 0.93378 0.93808 0.92795 0.93051 0.86852 0.83152 0.74857 0.81955 0.75349 0.92154 0.89979 0.92801 0.90201 0.90247 0.93117 0.95125 0.94191 0.94556 1.00667 0.93668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.40 -6.27 10.70 -148.98 -1.59 -7.86 16 3 C 0.05 0.80 6.04 71.98 0.43 1.24 16 4 C 0.12 1.48 6.77 86.38 0.58 2.06 16 5 N -0.28 -5.42 3.41 -347.96 -1.19 -6.61 16 6 C 0.01 0.22 11.40 83.54 0.95 1.17 16 7 C -0.20 -5.43 10.81 22.41 0.24 -5.19 16 8 C -0.04 -1.27 7.13 42.46 0.30 -0.96 16 9 C 0.59 24.34 7.78 86.75 0.68 25.01 16 10 O -0.58 -27.86 16.59 -3.94 -0.07 -27.93 16 11 N -0.70 -26.76 4.98 -447.29 -2.23 -28.99 16 12 C 0.14 5.64 2.27 44.62 0.10 5.74 16 13 H 0.06 2.79 6.75 -2.39 -0.02 2.78 16 14 C -0.11 -3.66 5.06 29.76 0.15 -3.51 16 15 C -0.10 -3.05 5.15 28.62 0.15 -2.90 16 16 C -0.13 -4.46 5.74 29.39 0.17 -4.29 16 17 C 0.14 6.28 5.66 87.37 0.49 6.77 16 18 N -0.60 -31.30 2.27 -698.38 -1.59 -32.89 16 19 C -0.26 -14.56 9.44 84.03 0.79 -13.77 16 20 H 0.07 3.88 7.88 -2.91 -0.02 3.85 16 21 C -0.05 -3.00 4.87 84.86 0.41 -2.59 16 22 N -0.94 -58.62 11.01 21.65 0.24 -58.38 16 23 Si 0.97 45.99 29.58 68.60 2.03 48.02 16 24 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 25 H -0.29 -13.86 7.11 99.48 0.71 -13.15 16 26 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 27 C 0.20 10.47 4.25 86.49 0.37 10.84 16 28 N -0.27 -7.71 11.35 -48.17 -0.55 -8.26 16 29 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 30 H 0.05 0.56 8.14 -2.39 -0.02 0.55 16 31 H 0.04 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.05 1.02 8.08 -2.39 -0.02 1.00 16 34 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.15 0.68 8.04 -2.39 -0.02 0.66 16 36 H 0.24 1.37 8.06 -2.91 -0.02 1.34 16 37 H 0.16 4.18 8.06 -2.91 -0.02 4.16 16 38 H 0.41 13.81 8.27 -92.71 -0.77 13.04 16 39 H 0.06 2.36 7.48 -2.39 -0.02 2.34 16 40 H 0.08 2.33 7.94 -2.38 -0.02 2.31 16 41 H 0.05 1.64 7.36 -2.39 -0.02 1.63 16 42 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 43 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.03 1.32 8.07 -2.39 -0.02 1.30 16 46 H 0.04 1.74 7.99 -2.39 -0.02 1.73 16 47 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 48 H -0.02 -1.57 8.03 -2.38 -0.02 -1.59 16 49 H 0.04 2.65 6.31 -2.39 -0.02 2.63 16 Total: -1.00 -80.18 396.35 2.32 -77.87 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: 0.18 Total: 23.83 kcal Atomic # 6 Polarization: 14.12 SS G_CDS: 7.08 Total: 21.19 kcal Atomic # 7 Polarization: -129.81 SS G_CDS: -5.31 Total: -135.12 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -1.66 Total: -35.79 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -80.18 2.32 -77.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034305414.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.076 kcal (2) G-P(sol) polarization free energy of solvation -80.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.866 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds