Wall clock time and date at job start Tue Mar 31 2020 19:51:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47318 * 2 1 4 4 C 1.50704 * 109.46948 * 119.99797 * 2 1 3 5 5 N 1.31072 * 126.66253 * 300.04183 * 4 2 1 6 6 N 1.28841 * 107.99198 * 179.97438 * 5 4 2 7 7 N 1.28739 * 109.39469 * 359.73020 * 6 5 4 8 8 N 1.29017 * 108.81099 * 0.44680 * 7 6 5 9 9 C 1.46499 * 126.43909 * 179.83112 * 8 7 6 10 10 C 1.50698 * 109.47198 * 269.68534 * 9 8 7 11 11 O 1.21282 * 120.00078 * 359.97438 * 10 9 8 12 12 N 1.34772 * 119.99960 * 180.02562 * 10 9 8 13 13 C 1.46499 * 120.00034 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.35805 * 324.71975 * 13 12 10 15 15 C 1.54845 * 109.35943 * 204.99615 * 13 12 10 16 16 C 1.50121 * 110.81445 * 201.06155 * 15 13 12 17 17 C 1.52527 * 105.41433 * 97.68551 * 16 15 13 18 18 C 1.46238 * 114.27438 * 270.58765 * 17 16 15 19 19 N 1.50164 * 107.53002 * 58.41187 * 18 17 16 20 20 C 1.36940 * 120.53765 * 109.56644 * 19 18 17 21 21 H 1.08004 * 120.00183 * 172.84646 * 20 19 18 22 22 C 1.38815 * 119.99854 * 352.84170 * 20 19 18 23 23 N 1.31620 * 119.99900 * 319.29777 * 22 20 19 24 24 Si 1.86797 * 119.99615 * 139.29920 * 22 20 19 25 25 H 1.48504 * 109.46872 * 179.97438 * 24 22 20 26 26 H 1.48497 * 109.47197 * 299.99684 * 24 22 20 27 27 H 1.48504 * 109.47341 * 60.00223 * 24 22 20 28 28 C 1.43430 * 118.92544 * 289.83407 * 19 18 17 29 29 H 1.08996 * 109.47275 * 300.00139 * 1 2 3 30 30 H 1.08999 * 109.46770 * 60.00272 * 1 2 3 31 31 H 1.08999 * 109.47055 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47275 * 239.99861 * 2 1 3 33 33 H 1.09000 * 109.47107 * 300.00135 * 3 2 1 34 34 H 1.09005 * 109.47058 * 59.99438 * 3 2 1 35 35 H 1.09001 * 109.47197 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.46836 * 149.67952 * 9 8 7 37 37 H 1.09005 * 109.46773 * 29.68714 * 9 8 7 38 38 H 0.97001 * 120.00173 * 359.97438 * 12 10 9 39 39 H 1.08995 * 109.20678 * 80.72016 * 15 13 12 40 40 H 1.09000 * 109.17081 * 321.38192 * 15 13 12 41 41 H 1.08998 * 110.25305 * 338.70962 * 16 15 13 42 42 H 1.09002 * 110.37182 * 216.71684 * 16 15 13 43 43 H 1.09004 * 108.51900 * 149.35009 * 17 16 15 44 44 H 1.08994 * 108.39931 * 31.74574 * 17 16 15 45 45 H 1.08996 * 109.85131 * 298.89823 * 18 17 16 46 46 H 1.09009 * 109.89776 * 177.94655 * 18 17 16 47 47 H 0.97001 * 119.99999 * 353.66198 * 23 22 20 48 48 H 1.09001 * 108.15893 * 213.03183 * 28 19 18 49 49 H 1.09000 * 108.16547 * 329.60142 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7969 -0.3788 2.4766 6 7 2.3979 -1.2293 3.2351 7 7 3.0060 -2.0981 2.5052 8 7 2.8094 -1.8089 1.2634 9 6 3.3289 -2.5422 0.1063 10 6 4.6670 -1.9732 -0.2895 11 8 5.1399 -1.0461 0.3332 12 7 5.3376 -2.4938 -1.3362 13 6 6.6387 -1.9410 -1.7207 14 1 6.6371 -0.8638 -1.5540 15 6 6.8953 -2.2279 -3.2205 16 6 8.3615 -2.1543 -3.5345 17 6 8.8537 -3.5978 -3.5127 18 6 9.3078 -4.0584 -2.2011 19 7 8.1580 -3.9100 -1.2466 20 6 7.5129 -5.0144 -0.7574 21 1 6.7655 -4.9055 0.0146 22 6 7.8194 -6.2740 -1.2539 23 7 8.0192 -6.4422 -2.5439 24 14 7.9483 -7.7302 -0.0910 25 1 8.2831 -8.9530 -0.8643 26 1 9.0130 -7.4707 0.9111 27 1 6.6507 -7.9248 0.6044 28 6 7.7428 -2.5927 -0.8601 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.1301 1.4425 0.0005 36 1 2.6325 -2.4468 -0.7268 37 1 3.4438 -3.5948 0.3651 38 1 4.9592 -3.2351 -1.8345 39 1 6.3623 -1.4922 -3.8227 40 1 6.5263 -3.2246 -3.4626 41 1 8.8805 -1.5672 -2.7769 42 1 8.5168 -1.7177 -4.5211 43 1 9.6794 -3.6928 -4.2180 44 1 8.0406 -4.2436 -3.8441 45 1 10.1480 -3.4504 -1.8658 46 1 9.6082 -5.1047 -2.2588 47 1 7.8628 -5.7083 -3.1586 48 1 7.3832 -2.6377 0.1679 49 1 8.6166 -1.9413 -0.8803 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034433762.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:51 Heat of formation + Delta-G solvation = 107.807639 kcal Electronic energy + Delta-G solvation = -30827.219347 eV Core-core repulsion = 26828.140438 eV Total energy + Delta-G solvation = -3999.078909 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -44.18791 -39.94265 -38.22218 -36.37731 -35.43382 -34.68456 -33.48070 -31.64446 -31.31175 -30.47468 -28.82524 -27.52697 -26.15007 -24.53654 -24.44712 -23.47093 -22.79539 -21.19760 -20.69042 -20.13455 -19.49899 -17.89021 -17.76988 -17.20659 -16.28185 -16.00769 -15.73056 -15.48883 -14.99533 -14.71461 -14.66750 -14.01415 -13.78254 -13.67714 -13.54991 -13.36061 -12.89800 -12.76044 -12.56811 -12.51632 -12.31788 -12.16742 -11.95900 -11.90666 -11.65470 -11.45573 -11.33887 -11.19731 -11.02189 -10.99840 -10.67296 -10.55926 -10.32789 -10.11413 -10.07050 -9.92724 -9.88123 -9.74373 -9.56909 -9.00260 -8.27730 -7.08953 -6.28225 -3.13900 1.18823 1.78362 2.27172 2.46844 3.18471 3.44234 3.53800 3.68442 3.71439 4.03233 4.27206 4.51013 4.51721 4.64086 4.66486 4.79488 4.97427 5.01942 5.05108 5.18295 5.25682 5.29462 5.34678 5.43910 5.52303 5.53887 5.56869 5.71125 5.78477 5.82684 5.84283 5.86543 5.96034 6.05322 6.10916 6.16799 6.23130 6.43854 6.52213 6.55622 6.71569 6.77639 6.80682 7.12604 7.14649 7.54055 7.88340 8.17245 8.41824 8.63619 8.95757 9.73898 10.18799 11.02015 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013646 B = 0.003528 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.418484 B = 7933.663339 C = 9206.707104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.010 4.010 3 C -0.143 4.143 4 C 0.198 3.802 5 N -0.303 5.303 6 N -0.078 5.078 7 N -0.080 5.080 8 N -0.289 5.289 9 C 0.090 3.910 10 C 0.499 3.501 11 O -0.532 6.532 12 N -0.691 5.691 13 C 0.115 3.885 14 H 0.077 0.923 15 C -0.110 4.110 16 C -0.111 4.111 17 C -0.135 4.135 18 C 0.128 3.872 19 N -0.586 5.586 20 C -0.357 4.357 21 H 0.063 0.937 22 C -0.012 4.012 23 N -0.899 5.899 24 Si 1.034 2.966 25 H -0.288 1.288 26 H -0.295 1.295 27 H -0.294 1.294 28 C 0.153 3.847 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.057 0.943 32 H 0.090 0.910 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.063 0.937 36 H 0.135 0.865 37 H 0.144 0.856 38 H 0.403 0.597 39 H 0.046 0.954 40 H 0.073 0.927 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.040 0.960 44 H 0.072 0.928 45 H 0.024 0.976 46 H 0.095 0.905 47 H 0.273 0.727 48 H 0.041 0.959 49 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.187 10.872 -4.895 16.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.031 4.031 3 C -0.201 4.201 4 C -0.080 4.080 5 N -0.152 5.152 6 N -0.071 5.071 7 N -0.065 5.065 8 N -0.089 5.089 9 C -0.036 4.036 10 C 0.281 3.719 11 O -0.409 6.409 12 N -0.341 5.341 13 C 0.007 3.993 14 H 0.095 0.905 15 C -0.149 4.149 16 C -0.149 4.149 17 C -0.174 4.174 18 C 0.004 3.996 19 N -0.307 5.307 20 C -0.485 4.485 21 H 0.081 0.919 22 C -0.215 4.215 23 N -0.541 5.541 24 Si 0.864 3.136 25 H -0.213 1.213 26 H -0.222 1.222 27 H -0.222 1.222 28 C 0.022 3.978 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.108 0.892 33 H 0.090 0.910 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.153 0.847 37 H 0.162 0.838 38 H 0.238 0.762 39 H 0.065 0.935 40 H 0.092 0.908 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.059 0.941 44 H 0.090 0.910 45 H 0.042 0.958 46 H 0.113 0.887 47 H 0.086 0.914 48 H 0.059 0.941 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.323 9.696 -2.897 14.455 hybrid contribution -0.534 1.028 -1.295 1.737 sum -10.857 10.723 -4.191 15.825 Atomic orbital electron populations 1.21847 0.92049 1.02673 1.03580 1.19761 0.97188 0.96534 0.89665 1.21821 1.02034 0.93074 1.03218 1.26015 0.95120 0.88970 0.97914 1.74905 1.20814 1.21127 0.98337 1.78593 1.07098 0.98981 1.22462 1.78947 1.18703 1.21650 0.87242 1.47859 1.33479 1.20655 1.06922 1.22056 0.96494 0.99108 0.85988 1.20069 0.86028 0.84078 0.81683 1.90781 1.68869 1.28952 1.52335 1.45887 1.21074 1.36114 1.30999 1.22916 0.83167 0.97576 0.95591 0.90525 1.21667 0.97246 1.01851 0.94094 1.20942 0.95516 0.98035 1.00376 1.21091 1.01293 0.95285 0.99772 1.20604 0.88854 1.02189 0.87906 1.44341 1.32857 1.00637 1.52879 1.19851 1.23842 0.86376 1.18384 0.91944 1.25392 1.00132 0.98368 0.97592 1.70893 1.47320 1.34201 1.01663 0.83985 0.76561 0.76881 0.76178 1.21328 1.22228 1.22159 1.20606 0.93760 0.87172 0.96227 0.90957 0.90874 0.92376 0.89216 0.91030 0.91107 0.91839 0.84716 0.83783 0.76215 0.93529 0.90828 0.91735 0.92489 0.94088 0.91000 0.95770 0.88691 0.91387 0.94081 0.94283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.18 37.16 0.34 -0.65 16 2 C -0.01 -0.09 3.26 -91.77 -0.30 -0.39 16 3 C -0.14 -1.27 9.18 37.16 0.34 -0.93 16 4 C 0.20 2.61 6.64 -155.43 -1.03 1.57 16 5 N -0.30 -4.82 12.36 32.70 0.40 -4.41 16 6 N -0.08 -1.39 13.43 60.35 0.81 -0.58 16 7 N -0.08 -1.39 13.29 60.35 0.80 -0.58 16 8 N -0.29 -4.07 2.83 -59.44 -0.17 -4.24 16 9 C 0.09 0.97 6.57 -5.20 -0.03 0.94 16 10 C 0.50 7.24 7.71 -10.99 -0.08 7.16 16 11 O -0.53 -9.96 16.09 5.56 0.09 -9.87 16 12 N -0.69 -9.77 5.08 -52.15 -0.26 -10.04 16 13 C 0.11 1.83 2.91 -66.22 -0.19 1.63 16 14 H 0.08 1.24 7.58 -51.93 -0.39 0.84 16 15 C -0.11 -1.61 5.23 -27.19 -0.14 -1.75 16 16 C -0.11 -1.65 5.76 -28.41 -0.16 -1.81 16 17 C -0.14 -2.41 4.96 -30.19 -0.15 -2.56 16 18 C 0.13 2.69 5.22 -5.21 -0.03 2.67 16 19 N -0.59 -12.93 2.62 -175.40 -0.46 -13.39 16 20 C -0.36 -8.86 9.46 -15.06 -0.14 -9.00 16 21 H 0.06 1.61 8.05 -52.48 -0.42 1.19 16 22 C -0.01 -0.31 4.53 -17.43 -0.08 -0.39 16 23 N -0.90 -23.77 11.99 55.49 0.67 -23.10 16 24 Si 1.03 23.71 30.05 -169.99 -5.11 18.60 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 27 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 28 C 0.15 2.99 4.74 -4.93 -0.02 2.97 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.09 0.62 6.85 -51.93 -0.36 0.26 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.14 0.82 7.13 -51.93 -0.37 0.45 16 37 H 0.14 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.40 5.11 8.44 -40.82 -0.34 4.76 16 39 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 1.20 6.58 -51.93 -0.34 0.86 16 41 H 0.06 0.98 6.28 -51.93 -0.33 0.65 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.07 1.43 4.65 -51.93 -0.24 1.19 16 45 H 0.02 0.48 8.13 -51.93 -0.42 0.06 16 46 H 0.10 2.29 5.61 -51.92 -0.29 2.00 16 47 H 0.27 6.93 4.95 -40.82 -0.20 6.73 16 48 H 0.04 0.91 7.80 -51.93 -0.41 0.51 16 49 H 0.04 0.74 6.89 -51.93 -0.36 0.38 16 LS Contribution 384.76 15.07 5.80 5.80 Total: -1.00 -32.42 384.76 -6.62 -39.04 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -7.50 Total: 3.31 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -1.69 Total: -0.53 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: 1.79 Total: -56.34 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 14 Polarization: 23.71 SS G_CDS: -5.11 Total: 18.60 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.42 -6.62 -39.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034433762.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.846 kcal (2) G-P(sol) polarization free energy of solvation -32.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds