Wall clock time and date at job start Tue Mar 31 2020 19:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47318 * 2 1 4 4 C 1.50704 * 109.46948 * 119.99797 * 2 1 3 5 5 N 1.31072 * 126.66253 * 300.04183 * 4 2 1 6 6 N 1.28841 * 107.99198 * 179.97438 * 5 4 2 7 7 N 1.28739 * 109.39469 * 359.73020 * 6 5 4 8 8 N 1.29017 * 108.81099 * 0.44680 * 7 6 5 9 9 C 1.46499 * 126.43909 * 179.83112 * 8 7 6 10 10 C 1.50698 * 109.47198 * 269.68534 * 9 8 7 11 11 O 1.21282 * 120.00078 * 359.97438 * 10 9 8 12 12 N 1.34772 * 119.99960 * 180.02562 * 10 9 8 13 13 C 1.46499 * 120.00034 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.35805 * 324.71975 * 13 12 10 15 15 C 1.54845 * 109.35943 * 204.99615 * 13 12 10 16 16 C 1.50121 * 110.81445 * 201.06155 * 15 13 12 17 17 C 1.52527 * 105.41433 * 97.68551 * 16 15 13 18 18 C 1.46238 * 114.27438 * 270.58765 * 17 16 15 19 19 N 1.50164 * 107.53002 * 58.41187 * 18 17 16 20 20 C 1.36940 * 120.53765 * 109.56644 * 19 18 17 21 21 H 1.08004 * 120.00183 * 172.84646 * 20 19 18 22 22 C 1.38815 * 119.99854 * 352.84170 * 20 19 18 23 23 N 1.31620 * 119.99900 * 319.29777 * 22 20 19 24 24 Si 1.86797 * 119.99615 * 139.29920 * 22 20 19 25 25 H 1.48504 * 109.46872 * 179.97438 * 24 22 20 26 26 H 1.48497 * 109.47197 * 299.99684 * 24 22 20 27 27 H 1.48504 * 109.47341 * 60.00223 * 24 22 20 28 28 C 1.43430 * 118.92544 * 289.83407 * 19 18 17 29 29 H 1.08996 * 109.47275 * 300.00139 * 1 2 3 30 30 H 1.08999 * 109.46770 * 60.00272 * 1 2 3 31 31 H 1.08999 * 109.47055 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47275 * 239.99861 * 2 1 3 33 33 H 1.09000 * 109.47107 * 300.00135 * 3 2 1 34 34 H 1.09005 * 109.47058 * 59.99438 * 3 2 1 35 35 H 1.09001 * 109.47197 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.46836 * 149.67952 * 9 8 7 37 37 H 1.09005 * 109.46773 * 29.68714 * 9 8 7 38 38 H 0.97001 * 120.00173 * 359.97438 * 12 10 9 39 39 H 1.08995 * 109.20678 * 80.72016 * 15 13 12 40 40 H 1.09000 * 109.17081 * 321.38192 * 15 13 12 41 41 H 1.08998 * 110.25305 * 338.70962 * 16 15 13 42 42 H 1.09002 * 110.37182 * 216.71684 * 16 15 13 43 43 H 1.09004 * 108.51900 * 149.35009 * 17 16 15 44 44 H 1.08994 * 108.39931 * 31.74574 * 17 16 15 45 45 H 1.08996 * 109.85131 * 298.89823 * 18 17 16 46 46 H 1.09009 * 109.89776 * 177.94655 * 18 17 16 47 47 H 0.97001 * 119.99999 * 353.66198 * 23 22 20 48 48 H 1.09001 * 108.15893 * 213.03183 * 28 19 18 49 49 H 1.09000 * 108.16547 * 329.60142 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7969 -0.3788 2.4766 6 7 2.3979 -1.2293 3.2351 7 7 3.0060 -2.0981 2.5052 8 7 2.8094 -1.8089 1.2634 9 6 3.3289 -2.5422 0.1063 10 6 4.6670 -1.9732 -0.2895 11 8 5.1399 -1.0461 0.3332 12 7 5.3376 -2.4938 -1.3362 13 6 6.6387 -1.9410 -1.7207 14 1 6.6371 -0.8638 -1.5540 15 6 6.8953 -2.2279 -3.2205 16 6 8.3615 -2.1543 -3.5345 17 6 8.8537 -3.5978 -3.5127 18 6 9.3078 -4.0584 -2.2011 19 7 8.1580 -3.9100 -1.2466 20 6 7.5129 -5.0144 -0.7574 21 1 6.7655 -4.9055 0.0146 22 6 7.8194 -6.2740 -1.2539 23 7 8.0192 -6.4422 -2.5439 24 14 7.9483 -7.7302 -0.0910 25 1 8.2831 -8.9530 -0.8643 26 1 9.0130 -7.4707 0.9111 27 1 6.6507 -7.9248 0.6044 28 6 7.7428 -2.5927 -0.8601 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 1.6767 1.9564 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 3.1301 1.4425 0.0005 36 1 2.6325 -2.4468 -0.7268 37 1 3.4438 -3.5948 0.3651 38 1 4.9592 -3.2351 -1.8345 39 1 6.3623 -1.4922 -3.8227 40 1 6.5263 -3.2246 -3.4626 41 1 8.8805 -1.5672 -2.7769 42 1 8.5168 -1.7177 -4.5211 43 1 9.6794 -3.6928 -4.2180 44 1 8.0406 -4.2436 -3.8441 45 1 10.1480 -3.4504 -1.8658 46 1 9.6082 -5.1047 -2.2588 47 1 7.8628 -5.7083 -3.1586 48 1 7.3832 -2.6377 0.1679 49 1 8.6166 -1.9413 -0.8803 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034433762.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:50 Heat of formation + Delta-G solvation = 86.174787 kcal Electronic energy + Delta-G solvation = -30828.157418 eV Core-core repulsion = 26828.140438 eV Total energy + Delta-G solvation = -4000.016980 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -45.32479 -41.20561 -39.66579 -37.19980 -36.55293 -36.10282 -34.97009 -33.10380 -32.60547 -31.91044 -29.95206 -28.12383 -27.79402 -25.87904 -25.49432 -24.86765 -24.23318 -22.44053 -21.80250 -21.35863 -20.90990 -19.08897 -18.99488 -18.76810 -17.46136 -17.17212 -16.89854 -16.68320 -16.27420 -16.11453 -15.64642 -15.55745 -15.33275 -15.04949 -14.46867 -14.33380 -14.21241 -13.99242 -13.82338 -13.77987 -13.47690 -13.22174 -13.10246 -12.78249 -12.73098 -12.58529 -12.48662 -12.43472 -12.31838 -12.29952 -12.18427 -11.94572 -11.91452 -11.76187 -11.54735 -11.28601 -11.21737 -11.16976 -10.94619 -10.42480 -10.05761 -8.87432 -8.26004 -5.06948 0.07923 0.80226 1.10167 1.33335 1.58871 1.66127 1.83727 2.08985 2.66228 2.85715 3.12535 3.14555 3.41903 3.45054 3.56592 3.80349 3.85166 4.00471 4.01601 4.04016 4.16268 4.22828 4.35119 4.37399 4.42768 4.47126 4.61729 4.66626 4.72203 4.76736 4.82239 4.89079 4.92265 4.93334 5.06598 5.11405 5.12244 5.15344 5.27193 5.29516 5.34042 5.40133 5.49046 5.54319 5.63043 5.92282 6.39472 6.51314 7.03836 7.10015 7.45614 7.86593 8.32811 9.07255 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013646 B = 0.003528 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.418484 B = 7933.663339 C = 9206.707104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.011 4.011 3 C -0.140 4.140 4 C 0.209 3.791 5 N -0.327 5.327 6 N -0.106 5.106 7 N -0.111 5.111 8 N -0.289 5.289 9 C 0.088 3.912 10 C 0.501 3.499 11 O -0.578 6.578 12 N -0.685 5.685 13 C 0.126 3.874 14 H 0.080 0.920 15 C -0.101 4.101 16 C -0.104 4.104 17 C -0.127 4.127 18 C 0.130 3.870 19 N -0.597 5.597 20 C -0.351 4.351 21 H 0.046 0.954 22 C -0.048 4.048 23 N -0.922 5.922 24 Si 1.071 2.929 25 H -0.294 1.294 26 H -0.300 1.300 27 H -0.283 1.283 28 C 0.157 3.843 29 H 0.056 0.944 30 H 0.102 0.898 31 H 0.062 0.938 32 H 0.119 0.881 33 H 0.104 0.896 34 H 0.057 0.943 35 H 0.037 0.963 36 H 0.193 0.807 37 H 0.156 0.844 38 H 0.413 0.587 39 H 0.079 0.921 40 H 0.057 0.943 41 H 0.062 0.938 42 H 0.087 0.913 43 H 0.053 0.947 44 H 0.051 0.949 45 H 0.032 0.968 46 H 0.061 0.939 47 H 0.274 0.726 48 H 0.005 0.995 49 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.681 11.910 -7.439 18.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.033 4.033 3 C -0.198 4.198 4 C -0.069 4.069 5 N -0.176 5.176 6 N -0.100 5.100 7 N -0.097 5.097 8 N -0.090 5.090 9 C -0.036 4.036 10 C 0.285 3.715 11 O -0.458 6.458 12 N -0.335 5.335 13 C 0.018 3.982 14 H 0.098 0.902 15 C -0.139 4.139 16 C -0.142 4.142 17 C -0.166 4.166 18 C 0.007 3.993 19 N -0.320 5.320 20 C -0.479 4.479 21 H 0.064 0.936 22 C -0.248 4.248 23 N -0.565 5.565 24 Si 0.900 3.100 25 H -0.220 1.220 26 H -0.228 1.228 27 H -0.209 1.209 28 C 0.027 3.973 29 H 0.076 0.924 30 H 0.121 0.879 31 H 0.081 0.919 32 H 0.137 0.863 33 H 0.123 0.877 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.210 0.790 37 H 0.174 0.826 38 H 0.249 0.751 39 H 0.098 0.902 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.106 0.894 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.050 0.950 46 H 0.079 0.921 47 H 0.087 0.913 48 H 0.024 0.976 49 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.833 10.732 -5.454 16.880 hybrid contribution 0.002 0.777 -0.494 0.920 sum -11.831 11.509 -5.948 17.544 Atomic orbital electron populations 1.21850 0.90211 1.03270 1.04325 1.20151 0.98555 0.96114 0.88484 1.21815 1.00348 0.93417 1.04267 1.26876 0.93456 0.88089 0.98462 1.74825 1.21620 1.21478 0.99667 1.78545 1.08060 0.99774 1.23633 1.78856 1.19580 1.22396 0.88824 1.48058 1.33278 1.21076 1.06597 1.22423 0.95633 0.98867 0.86655 1.20610 0.86978 0.83211 0.80724 1.90772 1.70270 1.31116 1.53629 1.45795 1.20399 1.36227 1.31076 1.22577 0.82539 0.97178 0.95928 0.90166 1.21581 0.97433 1.01892 0.92957 1.20938 0.95403 0.95738 1.02121 1.20928 1.00961 0.96983 0.97769 1.20541 0.88815 1.00415 0.89551 1.44336 1.33175 1.00839 1.53620 1.19811 1.23293 0.87381 1.17465 0.93559 1.26037 1.00728 0.99957 0.98039 1.70909 1.48966 1.34588 1.02068 0.83427 0.76736 0.74981 0.74858 1.22019 1.22789 1.20922 1.20588 0.95215 0.86426 0.95074 0.92448 0.87908 0.91879 0.86279 0.87737 0.92361 0.94353 0.78979 0.82648 0.75079 0.90195 0.92447 0.91899 0.89418 0.92825 0.93015 0.95007 0.92105 0.91349 0.97616 0.93892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.18 71.98 0.66 -0.79 16 2 C -0.01 -0.17 3.26 -11.54 -0.04 -0.21 16 3 C -0.14 -2.19 9.18 71.98 0.66 -1.53 16 4 C 0.21 5.25 6.64 138.13 0.92 6.17 16 5 N -0.33 -10.47 12.36 -50.45 -0.62 -11.09 16 6 N -0.11 -3.92 13.43 37.01 0.50 -3.42 16 7 N -0.11 -3.88 13.29 37.02 0.49 -3.39 16 8 N -0.29 -7.85 2.83 -341.97 -0.97 -8.82 16 9 C 0.09 1.70 6.57 85.63 0.56 2.27 16 10 C 0.50 13.78 7.71 87.66 0.68 14.45 16 11 O -0.58 -21.47 16.09 -3.04 -0.05 -21.52 16 12 N -0.69 -18.12 5.08 -437.29 -2.22 -20.34 16 13 C 0.13 3.77 2.91 46.10 0.13 3.91 16 14 H 0.08 2.42 7.58 -2.39 -0.02 2.41 16 15 C -0.10 -2.62 5.23 30.30 0.16 -2.46 16 16 C -0.10 -2.78 5.76 29.51 0.17 -2.62 16 17 C -0.13 -4.36 4.96 28.36 0.14 -4.22 16 18 C 0.13 5.46 5.22 83.58 0.44 5.89 16 19 N -0.60 -26.43 2.62 -708.84 -1.86 -28.29 16 20 C -0.35 -17.57 9.46 84.03 0.80 -16.78 16 21 H 0.05 2.43 8.05 -2.91 -0.02 2.41 16 22 C -0.05 -2.45 4.53 84.86 0.38 -2.07 16 23 N -0.92 -49.06 11.99 21.65 0.26 -48.80 16 24 Si 1.07 48.52 30.05 68.60 2.06 50.59 16 25 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 26 H -0.30 -13.71 7.11 99.48 0.71 -13.01 16 27 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 28 C 0.16 6.10 4.74 87.43 0.41 6.52 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 30 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.12 1.07 6.85 -2.39 -0.02 1.05 16 33 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 35 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.19 1.39 7.13 -2.39 -0.02 1.37 16 37 H 0.16 2.74 8.14 -2.38 -0.02 2.72 16 38 H 0.41 9.50 8.44 -92.71 -0.78 8.71 16 39 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.06 1.73 6.58 -2.39 -0.02 1.72 16 41 H 0.06 1.73 6.28 -2.39 -0.02 1.72 16 42 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 44 H 0.05 2.01 4.65 -2.39 -0.01 2.00 16 45 H 0.03 1.25 8.13 -2.39 -0.02 1.24 16 46 H 0.06 2.98 5.61 -2.38 -0.01 2.97 16 47 H 0.27 13.98 4.95 -92.71 -0.46 13.52 16 48 H 0.01 0.25 7.80 -2.39 -0.02 0.23 16 49 H 0.04 1.61 6.89 -2.39 -0.02 1.59 16 Total: -1.00 -74.68 384.76 4.16 -70.51 By element: Atomic # 1 Polarization: 15.54 SS G_CDS: 0.50 Total: 16.04 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: 6.07 Total: 8.53 kcal Atomic # 7 Polarization: -119.73 SS G_CDS: -4.42 Total: -124.15 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.05 Total: -21.52 kcal Atomic # 14 Polarization: 48.52 SS G_CDS: 2.06 Total: 50.59 kcal Total: -74.68 4.16 -70.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034433762.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.688 kcal (2) G-P(sol) polarization free energy of solvation -74.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.513 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds