Wall clock time and date at job start Tue Mar 31 2020 19:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00000 * 2 1 4 4 C 1.52999 * 109.47264 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47330 * 180.02562 * 4 3 2 6 6 C 1.34265 * 125.75381 * 125.30651 * 5 4 3 7 7 C 1.38040 * 107.41478 * 180.11073 * 6 5 4 8 8 C 1.47434 * 126.41410 * 179.86856 * 7 6 5 9 9 O 1.21604 * 119.99742 * 359.71956 * 8 7 6 10 10 N 1.34775 * 120.00364 * 179.71237 * 8 7 6 11 11 C 1.46497 * 120.00320 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.26026 * 35.32155 * 11 10 8 13 13 C 1.50878 * 109.36749 * 155.00399 * 11 10 8 14 14 C 1.52570 * 109.35827 * 212.07765 * 13 11 10 15 15 C 1.47092 * 114.32633 * 274.98606 * 14 13 11 16 16 C 1.54868 * 110.32051 * 62.79962 * 15 14 13 17 17 N 1.44580 * 109.60245 * 288.73369 * 16 15 14 18 18 C 1.36929 * 118.64288 * 270.70770 * 17 16 15 19 19 H 1.07994 * 120.00435 * 145.31796 * 18 17 16 20 20 C 1.38817 * 120.00059 * 325.31304 * 18 17 16 21 21 N 1.31618 * 120.00131 * 330.03635 * 20 18 17 22 22 Si 1.86804 * 120.00087 * 150.03072 * 20 18 17 23 23 H 1.48494 * 109.47295 * 180.02562 * 22 20 18 24 24 H 1.48496 * 109.46756 * 60.00295 * 22 20 18 25 25 H 1.48501 * 109.46873 * 300.00491 * 22 20 18 26 26 C 1.47596 * 122.70933 * 90.98220 * 17 16 15 27 27 C 1.41293 * 107.17326 * 359.61438 * 7 6 5 28 28 N 1.30444 * 108.01935 * 0.23567 * 27 7 6 29 29 H 1.09000 * 109.46774 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47111 * 299.99580 * 1 2 3 31 31 H 1.09004 * 109.47244 * 60.00037 * 1 2 3 32 32 H 1.09002 * 109.46935 * 60.00012 * 3 2 1 33 33 H 1.08999 * 109.47213 * 300.00068 * 3 2 1 34 34 H 1.09002 * 109.47152 * 60.00124 * 4 3 2 35 35 H 1.08999 * 109.47045 * 300.00150 * 4 3 2 36 36 H 1.07998 * 126.29328 * 359.96455 * 6 5 4 37 37 H 0.97003 * 119.99466 * 0.02562 * 10 8 7 38 38 H 1.08995 * 109.49363 * 92.10816 * 13 11 10 39 39 H 1.09006 * 109.49324 * 332.04211 * 13 11 10 40 40 H 1.09000 * 108.51222 * 153.73021 * 14 13 11 41 41 H 1.09006 * 108.39117 * 36.15093 * 14 13 11 42 42 H 1.08991 * 109.32672 * 302.54019 * 15 14 13 43 43 H 1.09002 * 109.18810 * 182.97416 * 15 14 13 44 44 H 1.09001 * 109.44591 * 168.69299 * 16 15 14 45 45 H 1.09006 * 109.42502 * 48.76113 * 16 15 14 46 46 H 0.97003 * 119.99901 * 355.10821 * 21 20 18 47 47 H 1.09007 * 108.94966 * 78.29928 * 26 17 16 48 48 H 1.09000 * 108.94673 * 196.92218 * 26 17 16 49 49 H 1.08003 * 125.98846 * 180.24165 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0260 2.9830 0.8891 7 6 5.3277 4.2831 0.5369 8 6 6.2642 5.1838 1.2335 9 8 6.8540 4.7990 2.2248 10 7 6.4667 6.4337 0.7717 11 6 7.3976 7.3285 1.4636 12 1 8.2332 6.7468 1.8528 13 6 7.9156 8.3601 0.4920 14 6 9.3440 8.7394 0.8709 15 6 9.4404 9.7897 1.8962 16 6 8.8074 9.3048 3.2239 17 7 7.3703 9.2382 3.0803 18 6 6.6291 10.3514 3.3740 19 1 5.7361 10.5705 2.8076 20 6 7.0254 11.1984 4.3999 21 7 7.6844 10.7176 5.4328 22 14 6.6235 13.0207 4.3145 23 1 7.1530 13.7016 5.5233 24 1 5.1509 13.2003 4.2498 25 1 7.2477 13.6089 3.1022 26 6 6.6689 8.0180 2.6359 27 6 4.5753 4.5872 -0.6198 28 7 3.8688 3.5353 -0.9297 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8567 0.6440 -0.8909 35 1 3.8574 0.6436 0.8891 36 1 5.4330 2.4370 1.7274 37 1 5.9959 6.7407 -0.0189 38 1 7.2818 9.2460 0.5300 39 1 7.9044 7.9475 -0.5169 40 1 9.8604 9.0825 -0.0256 41 1 9.8502 7.8475 1.2405 42 1 8.9158 10.6803 1.5506 43 1 10.4899 10.0314 2.0639 44 1 9.0605 10.0022 4.0225 45 1 9.1939 8.3157 3.4698 46 1 7.8313 9.7621 5.5123 47 1 6.6020 7.3233 3.4732 48 1 5.6609 8.2850 2.3183 49 1 4.5838 5.5259 -1.1538 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034509964.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:34 Heat of formation + Delta-G solvation = 16.685767 kcal Electronic energy + Delta-G solvation = -29031.788046 eV Core-core repulsion = 24996.465044 eV Total energy + Delta-G solvation = -4035.323001 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.62963 -39.38095 -38.47836 -37.60575 -34.68980 -34.29642 -33.38250 -31.07748 -30.67626 -30.20334 -29.08877 -26.82158 -25.84897 -24.47967 -24.02092 -23.40812 -22.24424 -21.00289 -20.30506 -19.78840 -19.14046 -18.09831 -17.17192 -16.98372 -16.78464 -15.95921 -15.83047 -15.70398 -15.23609 -14.90308 -14.61045 -14.44192 -14.03619 -13.90858 -13.63117 -13.54797 -13.36052 -13.07097 -12.86610 -12.53159 -12.45576 -12.22803 -12.19660 -11.89334 -11.68324 -11.29760 -11.05546 -10.72111 -10.59330 -10.37510 -10.28766 -10.11750 -10.00066 -9.94075 -9.90064 -9.77479 -9.67455 -9.27175 -8.99300 -8.71618 -8.21482 -6.71883 -5.99386 -3.26669 1.32772 1.84494 2.00865 3.22633 3.43588 3.51888 3.55342 3.58899 3.73115 4.09726 4.34286 4.51686 4.52394 4.64274 4.68450 4.80444 4.82768 4.96774 5.04438 5.11397 5.15976 5.19043 5.28124 5.34382 5.40281 5.51889 5.59254 5.65961 5.90052 5.94935 6.12014 6.14450 6.36345 6.41592 6.43673 6.52348 6.54084 6.63635 6.75357 6.76458 6.85241 6.91356 7.01315 7.22077 7.24382 7.44511 7.81092 8.14832 8.51462 8.65346 9.23974 9.91249 10.32022 11.19294 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.018055 B = 0.002174 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.454342 B =12873.521368 C =13638.116689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.050 3.950 4 C 0.135 3.865 5 N -0.364 5.364 6 C 0.130 3.870 7 C -0.285 4.285 8 C 0.591 3.409 9 O -0.548 6.548 10 N -0.717 5.717 11 C 0.134 3.866 12 H 0.079 0.921 13 C -0.114 4.114 14 C -0.098 4.098 15 C -0.142 4.142 16 C 0.142 3.858 17 N -0.587 5.587 18 C -0.356 4.356 19 H 0.049 0.951 20 C -0.020 4.020 21 N -0.900 5.900 22 Si 1.059 2.941 23 H -0.286 1.286 24 H -0.293 1.293 25 H -0.293 1.293 26 C 0.142 3.858 27 C 0.085 3.915 28 N -0.299 5.299 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.045 0.955 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.109 0.891 36 H 0.190 0.810 37 H 0.395 0.605 38 H 0.080 0.920 39 H 0.053 0.947 40 H 0.045 0.955 41 H 0.047 0.953 42 H 0.064 0.936 43 H 0.046 0.954 44 H 0.079 0.921 45 H 0.024 0.976 46 H 0.270 0.730 47 H 0.018 0.982 48 H 0.050 0.950 49 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.541 -18.241 -14.431 24.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.027 4.027 4 C 0.014 3.986 5 N -0.144 5.144 6 C -0.020 4.020 7 C -0.299 4.299 8 C 0.378 3.622 9 O -0.426 6.426 10 N -0.367 5.367 11 C 0.029 3.971 12 H 0.097 0.903 13 C -0.152 4.152 14 C -0.136 4.136 15 C -0.182 4.182 16 C 0.015 3.985 17 N -0.309 5.309 18 C -0.485 4.485 19 H 0.067 0.933 20 C -0.223 4.223 21 N -0.538 5.538 22 Si 0.889 3.111 23 H -0.212 1.212 24 H -0.220 1.220 25 H -0.220 1.220 26 C 0.016 3.984 27 C -0.103 4.103 28 N -0.118 5.118 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.116 0.884 35 H 0.127 0.873 36 H 0.207 0.793 37 H 0.228 0.772 38 H 0.099 0.901 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.064 0.936 44 H 0.097 0.903 45 H 0.042 0.958 46 H 0.081 0.919 47 H 0.036 0.964 48 H 0.068 0.932 49 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -8.732 -17.892 -13.748 24.195 hybrid contribution -0.213 -0.771 -0.680 1.050 sum -8.945 -18.663 -14.428 25.229 Atomic orbital electron populations 1.22791 0.79834 1.03156 1.00476 1.87773 1.20677 1.26865 1.95627 1.22654 0.92426 0.85409 1.02222 1.21480 0.92780 0.78663 1.05708 1.48294 1.32952 1.12041 1.21160 1.23009 0.90579 0.94403 0.94054 1.20382 1.10159 0.96274 1.03129 1.17206 0.80619 0.81197 0.83223 1.90787 1.49883 1.75866 1.26084 1.45955 1.46399 1.12985 1.31351 1.21502 0.91924 0.90068 0.93598 0.90258 1.21253 0.97991 0.99305 0.96619 1.20261 0.95336 0.99377 0.98659 1.21374 0.99323 0.98844 0.98706 1.20935 0.83574 0.98380 0.95591 1.43571 1.01047 1.08645 1.77658 1.19848 1.11343 1.02191 1.15123 0.93319 1.25821 1.00000 1.05598 0.90909 1.70765 1.42163 1.16107 1.24810 0.83612 0.75693 0.76097 0.75698 1.21203 1.22043 1.22016 1.21593 0.94828 0.88765 0.93238 1.24108 0.93500 0.97747 0.94980 1.77134 1.24394 0.96885 1.13427 0.89124 0.93700 0.93675 0.92448 0.91442 0.88353 0.87261 0.79341 0.77159 0.90142 0.92831 0.93669 0.93382 0.91774 0.93558 0.90350 0.95770 0.91949 0.96370 0.93183 0.79230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -2.99 10.70 -35.23 -0.38 -3.36 16 3 C 0.05 0.36 6.11 37.16 0.23 0.59 16 4 C 0.14 0.91 6.86 -4.04 -0.03 0.88 16 5 N -0.36 -3.49 3.65 -60.81 -0.22 -3.71 16 6 C 0.13 1.38 11.25 -16.56 -0.19 1.19 16 7 C -0.28 -3.52 6.13 -105.06 -0.64 -4.17 16 8 C 0.59 9.23 7.77 -12.52 -0.10 9.13 16 9 O -0.55 -10.74 16.56 5.27 0.09 -10.65 16 10 N -0.72 -10.37 4.97 -55.26 -0.27 -10.65 16 11 C 0.13 2.37 2.27 -68.32 -0.15 2.21 16 12 H 0.08 1.56 6.74 -51.93 -0.35 1.21 16 13 C -0.11 -1.83 5.07 -28.02 -0.14 -1.98 16 14 C -0.10 -1.64 5.16 -29.79 -0.15 -1.80 16 15 C -0.14 -2.81 5.74 -28.58 -0.16 -2.97 16 16 C 0.14 3.34 4.89 -4.08 -0.02 3.32 16 17 N -0.59 -14.51 2.01 -171.87 -0.35 -14.85 16 18 C -0.36 -9.77 9.17 -15.06 -0.14 -9.91 16 19 H 0.05 1.36 7.97 -52.49 -0.42 0.94 16 20 C -0.02 -0.56 4.68 -17.43 -0.08 -0.64 16 21 N -0.90 -26.87 12.18 55.49 0.68 -26.20 16 22 Si 1.06 25.08 30.01 -169.99 -5.10 19.98 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 25 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 26 C 0.14 3.13 5.86 -2.76 -0.02 3.11 16 27 C 0.08 0.89 11.50 -16.98 -0.20 0.69 16 28 N -0.30 -3.29 12.33 30.86 0.38 -2.91 16 29 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.04 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.11 0.52 8.06 -51.93 -0.42 0.10 16 36 H 0.19 1.63 8.06 -52.49 -0.42 1.21 16 37 H 0.39 4.42 7.50 -40.82 -0.31 4.12 16 38 H 0.08 1.46 7.49 -51.93 -0.39 1.07 16 39 H 0.05 0.71 7.94 -51.93 -0.41 0.30 16 40 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.05 0.80 7.35 -51.93 -0.38 0.41 16 42 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 43 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 44 H 0.08 2.09 5.28 -51.93 -0.27 1.82 16 45 H 0.02 0.55 8.06 -51.93 -0.42 0.13 16 46 H 0.27 8.24 7.39 -40.82 -0.30 7.94 16 47 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 48 H 0.05 1.10 7.86 -51.93 -0.41 0.69 16 49 H 0.19 1.40 7.50 -52.48 -0.39 1.01 16 LS Contribution 395.82 15.07 5.96 5.96 Total: -1.00 -34.34 395.82 -7.81 -42.15 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -7.92 Total: 3.27 kcal Atomic # 6 Polarization: 1.65 SS G_CDS: -0.68 Total: 0.96 kcal Atomic # 7 Polarization: -58.54 SS G_CDS: 0.21 Total: -58.32 kcal Atomic # 8 Polarization: -13.73 SS G_CDS: -0.29 Total: -14.02 kcal Atomic # 14 Polarization: 25.08 SS G_CDS: -5.10 Total: 19.98 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.34 -7.81 -42.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034509964.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.840 kcal (2) G-P(sol) polarization free energy of solvation -34.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds