Wall clock time and date at job start Tue Mar 31 2020 19:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 114.00000 * 2 1 4 4 C 1.52999 * 109.47264 * 180.02562 * 3 2 1 5 5 N 1.46496 * 109.47330 * 180.02562 * 4 3 2 6 6 C 1.34265 * 125.75381 * 125.30651 * 5 4 3 7 7 C 1.38040 * 107.41478 * 180.11073 * 6 5 4 8 8 C 1.47434 * 126.41410 * 179.86856 * 7 6 5 9 9 O 1.21604 * 119.99742 * 359.71956 * 8 7 6 10 10 N 1.34775 * 120.00364 * 179.71237 * 8 7 6 11 11 C 1.46497 * 120.00320 * 180.02562 * 10 8 7 12 12 H 1.08994 * 109.26026 * 35.32155 * 11 10 8 13 13 C 1.50878 * 109.36749 * 155.00399 * 11 10 8 14 14 C 1.52570 * 109.35827 * 212.07765 * 13 11 10 15 15 C 1.47092 * 114.32633 * 274.98606 * 14 13 11 16 16 C 1.54868 * 110.32051 * 62.79962 * 15 14 13 17 17 N 1.44580 * 109.60245 * 288.73369 * 16 15 14 18 18 C 1.36929 * 118.64288 * 270.70770 * 17 16 15 19 19 H 1.07994 * 120.00435 * 145.31796 * 18 17 16 20 20 C 1.38817 * 120.00059 * 325.31304 * 18 17 16 21 21 N 1.31618 * 120.00131 * 330.03635 * 20 18 17 22 22 Si 1.86804 * 120.00087 * 150.03072 * 20 18 17 23 23 H 1.48494 * 109.47295 * 180.02562 * 22 20 18 24 24 H 1.48496 * 109.46756 * 60.00295 * 22 20 18 25 25 H 1.48501 * 109.46873 * 300.00491 * 22 20 18 26 26 C 1.47596 * 122.70933 * 90.98220 * 17 16 15 27 27 C 1.41293 * 107.17326 * 359.61438 * 7 6 5 28 28 N 1.30444 * 108.01935 * 0.23567 * 27 7 6 29 29 H 1.09000 * 109.46774 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47111 * 299.99580 * 1 2 3 31 31 H 1.09004 * 109.47244 * 60.00037 * 1 2 3 32 32 H 1.09002 * 109.46935 * 60.00012 * 3 2 1 33 33 H 1.08999 * 109.47213 * 300.00068 * 3 2 1 34 34 H 1.09002 * 109.47152 * 60.00124 * 4 3 2 35 35 H 1.08999 * 109.47045 * 300.00150 * 4 3 2 36 36 H 1.07998 * 126.29328 * 359.96455 * 6 5 4 37 37 H 0.97003 * 119.99466 * 0.02562 * 10 8 7 38 38 H 1.08995 * 109.49363 * 92.10816 * 13 11 10 39 39 H 1.09006 * 109.49324 * 332.04211 * 13 11 10 40 40 H 1.09000 * 108.51222 * 153.73021 * 14 13 11 41 41 H 1.09006 * 108.39117 * 36.15093 * 14 13 11 42 42 H 1.08991 * 109.32672 * 302.54019 * 15 14 13 43 43 H 1.09002 * 109.18810 * 182.97416 * 15 14 13 44 44 H 1.09001 * 109.44591 * 168.69299 * 16 15 14 45 45 H 1.09006 * 109.42502 * 48.76113 * 16 15 14 46 46 H 0.97003 * 119.99901 * 355.10821 * 21 20 18 47 47 H 1.09007 * 108.94966 * 78.29928 * 26 17 16 48 48 H 1.09000 * 108.94673 * 196.92218 * 26 17 16 49 49 H 1.08003 * 125.98846 * 180.24165 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1313 2.5230 0.0000 6 6 5.0260 2.9830 0.8891 7 6 5.3277 4.2831 0.5369 8 6 6.2642 5.1838 1.2335 9 8 6.8540 4.7990 2.2248 10 7 6.4667 6.4337 0.7717 11 6 7.3976 7.3285 1.4636 12 1 8.2332 6.7468 1.8528 13 6 7.9156 8.3601 0.4920 14 6 9.3440 8.7394 0.8709 15 6 9.4404 9.7897 1.8962 16 6 8.8074 9.3048 3.2239 17 7 7.3703 9.2382 3.0803 18 6 6.6291 10.3514 3.3740 19 1 5.7361 10.5705 2.8076 20 6 7.0254 11.1984 4.3999 21 7 7.6844 10.7176 5.4328 22 14 6.6235 13.0207 4.3145 23 1 7.1530 13.7016 5.5233 24 1 5.1509 13.2003 4.2498 25 1 7.2477 13.6089 3.1022 26 6 6.6689 8.0180 2.6359 27 6 4.5753 4.5872 -0.6198 28 7 3.8688 3.5353 -0.9297 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8567 0.6440 -0.8909 35 1 3.8574 0.6436 0.8891 36 1 5.4330 2.4370 1.7274 37 1 5.9959 6.7407 -0.0189 38 1 7.2818 9.2460 0.5300 39 1 7.9044 7.9475 -0.5169 40 1 9.8604 9.0825 -0.0256 41 1 9.8502 7.8475 1.2405 42 1 8.9158 10.6803 1.5506 43 1 10.4899 10.0314 2.0639 44 1 9.0605 10.0022 4.0225 45 1 9.1939 8.3157 3.4698 46 1 7.8313 9.7621 5.5123 47 1 6.6020 7.3233 3.4732 48 1 5.6609 8.2850 2.3183 49 1 4.5838 5.5259 -1.1538 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034509964.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:32 Heat of formation + Delta-G solvation = -6.711732 kcal Electronic energy + Delta-G solvation = -29032.802638 eV Core-core repulsion = 24996.465044 eV Total energy + Delta-G solvation = -4036.337593 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.47065 -40.72460 -39.23054 -38.97033 -36.33430 -35.14908 -34.83833 -32.87819 -31.86954 -31.33043 -30.02536 -27.78220 -27.25805 -26.10971 -25.16804 -24.45492 -23.59578 -21.83195 -21.66654 -21.08002 -20.73071 -19.20670 -18.99918 -17.70637 -17.37889 -17.25061 -16.73084 -16.64660 -16.42107 -16.06549 -15.88793 -15.66990 -15.47354 -15.33914 -15.00906 -14.82772 -14.43461 -14.30716 -14.14412 -13.95750 -13.80789 -13.38439 -13.08961 -12.76811 -12.73520 -12.57438 -12.38355 -12.35754 -12.08119 -12.03159 -11.87461 -11.75851 -11.54434 -11.36204 -11.19715 -10.94932 -10.81051 -10.67334 -10.49557 -10.11464 -9.71828 -8.83299 -8.15299 -5.45690 0.45096 1.10065 1.16027 1.59980 1.67292 1.86269 2.23245 2.45931 2.68833 2.70221 3.20670 3.44231 3.58683 3.75263 3.82561 3.84351 3.86892 4.00212 4.07754 4.16520 4.21906 4.25941 4.31204 4.37703 4.42965 4.46100 4.53569 4.60121 4.62047 4.69292 4.75843 4.80682 4.88484 4.98482 5.04870 5.09414 5.27000 5.29423 5.34020 5.40442 5.48096 5.60625 5.64515 5.71714 5.95103 5.99063 6.39039 6.42487 6.66916 7.15137 7.33304 7.84081 8.21648 8.95139 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.018055 B = 0.002174 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.454342 B =12873.521368 C =13638.116689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.056 3.944 4 C 0.130 3.870 5 N -0.357 5.357 6 C 0.137 3.863 7 C -0.310 4.310 8 C 0.591 3.409 9 O -0.596 6.596 10 N -0.705 5.705 11 C 0.153 3.847 12 H 0.060 0.940 13 C -0.105 4.105 14 C -0.099 4.099 15 C -0.129 4.129 16 C 0.142 3.858 17 N -0.597 5.597 18 C -0.357 4.357 19 H 0.044 0.956 20 C -0.071 4.071 21 N -0.925 5.925 22 Si 1.111 2.889 23 H -0.294 1.294 24 H -0.277 1.277 25 H -0.275 1.275 26 C 0.146 3.854 27 C 0.093 3.907 28 N -0.315 5.315 29 H 0.105 0.895 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.108 0.892 35 H 0.131 0.869 36 H 0.205 0.795 37 H 0.414 0.586 38 H 0.063 0.937 39 H 0.094 0.906 40 H 0.079 0.921 41 H 0.050 0.950 42 H 0.048 0.952 43 H 0.062 0.938 44 H 0.044 0.956 45 H 0.020 0.980 46 H 0.250 0.750 47 H -0.020 1.020 48 H 0.046 0.954 49 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.088 -18.623 -17.271 26.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.323 6.323 3 C -0.021 4.021 4 C 0.010 3.990 5 N -0.137 5.137 6 C -0.015 4.015 7 C -0.325 4.325 8 C 0.380 3.620 9 O -0.478 6.478 10 N -0.356 5.356 11 C 0.047 3.953 12 H 0.079 0.921 13 C -0.143 4.143 14 C -0.137 4.137 15 C -0.169 4.169 16 C 0.016 3.984 17 N -0.320 5.320 18 C -0.487 4.487 19 H 0.062 0.938 20 C -0.269 4.269 21 N -0.566 5.566 22 Si 0.935 3.065 23 H -0.220 1.220 24 H -0.203 1.203 25 H -0.201 1.201 26 C 0.020 3.980 27 C -0.095 4.095 28 N -0.135 5.135 29 H 0.123 0.877 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.126 0.874 35 H 0.149 0.851 36 H 0.222 0.778 37 H 0.251 0.749 38 H 0.081 0.919 39 H 0.113 0.887 40 H 0.097 0.903 41 H 0.069 0.931 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.062 0.938 45 H 0.038 0.962 46 H 0.060 0.940 47 H -0.002 1.002 48 H 0.064 0.936 49 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -9.318 -18.304 -16.666 26.450 hybrid contribution -0.129 -0.796 0.239 0.841 sum -9.447 -19.100 -16.427 26.905 Atomic orbital electron populations 1.22971 0.78709 1.04319 1.00902 1.87749 1.21976 1.26913 1.95674 1.22549 0.92689 0.85312 1.01591 1.21743 0.92449 0.77462 1.07341 1.48490 1.32273 1.12591 1.20313 1.23293 0.90003 0.94057 0.94111 1.20167 1.11108 0.96676 1.04507 1.17654 0.80287 0.81505 0.82565 1.90764 1.51885 1.76801 1.28303 1.45740 1.45971 1.12317 1.31568 1.21040 0.91210 0.90301 0.92770 0.92149 1.21195 0.97120 0.97930 0.98039 1.20247 0.96102 0.98409 0.98972 1.21214 0.99520 0.99099 0.97037 1.20901 0.83275 0.97335 0.96938 1.43735 1.01555 1.08868 1.77844 1.20048 1.11324 1.02967 1.14371 0.93815 1.27205 0.99886 1.09368 0.90401 1.70906 1.44591 1.14696 1.26389 0.82926 0.76450 0.71268 0.75848 1.22047 1.20302 1.20127 1.21598 0.95231 0.87320 0.93843 1.24512 0.92242 0.98611 0.94112 1.77126 1.24868 0.97341 1.14150 0.87677 0.93352 0.93188 0.92918 0.92238 0.87352 0.85076 0.77825 0.74872 0.91871 0.88730 0.90268 0.93114 0.93323 0.91907 0.93836 0.96172 0.94042 1.00155 0.93589 0.76506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.40 -5.60 10.70 -148.98 -1.59 -7.19 16 3 C 0.06 0.74 6.11 71.98 0.44 1.18 16 4 C 0.13 1.50 6.86 86.38 0.59 2.09 16 5 N -0.36 -6.19 3.65 -346.31 -1.26 -7.46 16 6 C 0.14 2.72 11.25 84.27 0.95 3.66 16 7 C -0.31 -7.27 6.13 -20.15 -0.12 -7.39 16 8 C 0.59 18.22 7.77 86.67 0.67 18.89 16 9 O -0.60 -23.88 16.56 -4.04 -0.07 -23.95 16 10 N -0.70 -19.53 4.97 -447.00 -2.22 -21.76 16 11 C 0.15 5.34 2.27 44.74 0.10 5.44 16 12 H 0.06 2.39 6.74 -2.39 -0.02 2.37 16 13 C -0.10 -3.13 5.07 29.76 0.15 -2.98 16 14 C -0.10 -3.07 5.16 28.61 0.15 -2.92 16 15 C -0.13 -4.96 5.74 29.40 0.17 -4.79 16 16 C 0.14 6.86 4.89 87.38 0.43 7.29 16 17 N -0.60 -30.39 2.01 -697.68 -1.40 -31.80 16 18 C -0.36 -20.01 9.17 84.04 0.77 -19.24 16 19 H 0.04 2.47 7.97 -2.91 -0.02 2.44 16 20 C -0.07 -4.06 4.68 84.86 0.40 -3.66 16 21 N -0.93 -57.29 12.18 21.65 0.26 -57.03 16 22 Si 1.11 50.90 30.01 68.60 2.06 52.96 16 23 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 24 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 25 H -0.28 -11.75 7.11 99.48 0.71 -11.05 16 26 C 0.15 6.64 5.86 86.61 0.51 7.14 16 27 C 0.09 1.75 11.50 85.65 0.99 2.73 16 28 N -0.32 -6.31 12.33 -56.27 -0.69 -7.01 16 29 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.05 0.40 8.14 -2.38 -0.02 0.38 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.13 0.94 8.06 -2.39 -0.02 0.92 16 36 H 0.21 3.26 8.06 -2.91 -0.02 3.24 16 37 H 0.41 8.22 7.50 -92.71 -0.70 7.53 16 38 H 0.06 2.16 7.49 -2.39 -0.02 2.14 16 39 H 0.09 2.10 7.94 -2.38 -0.02 2.08 16 40 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.05 1.57 7.35 -2.38 -0.02 1.55 16 42 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 44 H 0.04 2.43 5.28 -2.39 -0.01 2.41 16 45 H 0.02 0.95 8.06 -2.38 -0.02 0.93 16 46 H 0.25 16.11 7.39 -92.71 -0.69 15.43 16 47 H -0.02 -1.02 8.14 -2.38 -0.02 -1.04 16 48 H 0.05 2.07 7.86 -2.39 -0.02 2.05 16 49 H 0.22 2.52 7.50 -2.91 -0.02 2.50 16 Total: -1.00 -77.78 395.82 2.85 -74.94 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 0.34 Total: 19.36 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: 7.44 Total: 8.93 kcal Atomic # 7 Polarization: -119.72 SS G_CDS: -5.32 Total: -125.05 kcal Atomic # 8 Polarization: -29.48 SS G_CDS: -1.66 Total: -31.14 kcal Atomic # 14 Polarization: 50.90 SS G_CDS: 2.06 Total: 52.96 kcal Total: -77.78 2.85 -74.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034509964.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.224 kcal (2) G-P(sol) polarization free energy of solvation -77.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds