Wall clock time and date at job start Tue Mar 31 2020 19:19:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00114 * 2 1 4 4 C 1.53003 * 109.46905 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46968 * 179.97438 * 4 3 2 6 6 C 1.34263 * 125.75664 * 124.99813 * 5 4 3 7 7 C 1.38046 * 107.41912 * 179.97438 * 6 5 4 8 8 C 1.47422 * 126.41354 * 179.97438 * 7 6 5 9 9 O 1.21602 * 120.00115 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99988 * 179.97438 * 8 7 6 11 11 C 1.46501 * 120.00313 * 180.02562 * 10 8 7 12 12 H 1.08998 * 108.45485 * 325.00643 * 11 10 8 13 13 C 1.52523 * 108.52147 * 207.28775 * 11 10 8 14 14 C 1.50310 * 105.32402 * 149.24385 * 13 11 10 15 15 C 1.54845 * 110.69096 * 97.83966 * 14 13 11 16 16 C 1.54894 * 110.14312 * 321.12899 * 15 14 13 17 17 N 1.43438 * 116.08172 * 318.63878 * 16 15 14 18 18 C 1.36930 * 120.54230 * 271.59337 * 17 16 15 19 19 H 1.08003 * 119.99804 * 336.25351 * 18 17 16 20 20 C 1.38812 * 120.00506 * 156.25146 * 18 17 16 21 21 N 1.31617 * 119.99645 * 338.60461 * 20 18 17 22 22 Si 1.86797 * 120.00143 * 158.60258 * 20 18 17 23 23 H 1.48506 * 109.47252 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.47309 * 120.00186 * 22 20 18 25 25 H 1.48502 * 109.47206 * 240.00189 * 22 20 18 26 26 C 1.46245 * 108.51798 * 82.71319 * 11 10 8 27 27 C 1.41292 * 107.16948 * 359.97438 * 7 6 5 28 28 N 1.30456 * 108.02237 * 359.74570 * 27 7 6 29 29 H 1.08998 * 109.46821 * 300.00456 * 1 2 3 30 30 H 1.08994 * 109.47408 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47023 * 60.00011 * 1 2 3 32 32 H 1.08999 * 109.47037 * 299.99317 * 3 2 1 33 33 H 1.08994 * 109.47550 * 59.99990 * 3 2 1 34 34 H 1.09005 * 109.46921 * 299.99544 * 4 3 2 35 35 H 1.08997 * 109.47654 * 59.99325 * 4 3 2 36 36 H 1.08006 * 126.28852 * 359.95335 * 6 5 4 37 37 H 0.97001 * 119.99511 * 0.02562 * 10 8 7 38 38 H 1.08995 * 110.25210 * 268.32519 * 13 11 10 39 39 H 1.08998 * 110.24798 * 30.38453 * 13 11 10 40 40 H 1.08996 * 109.27321 * 337.53536 * 14 13 11 41 41 H 1.09000 * 109.23162 * 218.11934 * 14 13 11 42 42 H 1.08998 * 109.35631 * 200.92468 * 15 14 13 43 43 H 1.08996 * 109.24860 * 81.26723 * 15 14 13 44 44 H 1.09002 * 108.16517 * 196.92115 * 16 15 14 45 45 H 1.09007 * 108.16178 * 80.35618 * 16 15 14 46 46 H 0.97007 * 119.99719 * 179.97438 * 21 20 18 47 47 H 1.08995 * 109.84725 * 299.15440 * 26 11 10 48 48 H 1.09002 * 109.84375 * 60.14089 * 26 11 10 49 49 H 1.07999 * 125.98974 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1314 2.5229 -0.0013 6 6 5.0218 2.9856 0.8907 7 6 5.3275 4.2837 0.5342 8 6 6.2631 5.1853 1.2306 9 8 6.8525 4.8016 2.2227 10 7 6.4660 6.4346 0.7673 11 6 7.3961 7.3305 1.4591 12 1 7.3349 7.1321 2.5291 13 6 6.9599 8.7702 1.2073 14 6 7.3724 9.5309 2.4362 15 6 8.7218 10.2544 2.2046 16 6 9.6736 9.3557 1.3766 17 7 9.6867 7.9637 1.7226 18 6 10.5354 7.4951 2.6896 19 1 11.4377 8.0395 2.9261 20 6 10.2361 6.3204 3.3659 21 7 8.9956 5.8825 3.4069 22 14 11.5939 5.3612 4.2177 23 1 12.8899 6.0603 4.0249 24 1 11.2957 5.2639 5.6691 25 1 11.6757 3.9970 3.6367 26 6 8.7540 7.0288 1.0076 27 6 4.5759 4.5864 -0.6233 28 7 3.8738 3.5321 -0.9357 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8463 -0.8900 33 1 1.6887 1.8464 0.8899 34 1 3.8574 0.6435 0.8892 35 1 3.8568 0.6437 -0.8907 36 1 5.4246 2.4422 1.7328 37 1 5.9961 6.7405 -0.0242 38 1 7.4642 9.1687 0.3270 39 1 5.8786 8.8198 1.0792 40 1 7.4760 8.8375 3.2708 41 1 6.6065 10.2686 2.6758 42 1 9.1819 10.4775 3.1672 43 1 8.5429 11.1845 1.6654 44 1 10.6868 9.7424 1.4858 45 1 9.3944 9.4420 0.3264 46 1 8.7865 5.0613 3.8792 47 1 9.0048 5.9968 1.2528 48 1 8.8289 7.1829 -0.0689 49 1 4.5841 5.5246 -1.1581 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034509966.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:38 Heat of formation + Delta-G solvation = 37.352406 kcal Electronic energy + Delta-G solvation = -29793.885824 eV Core-core repulsion = 25759.458996 eV Total energy + Delta-G solvation = -4034.426829 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.29797 -38.98858 -38.35451 -37.12690 -34.08406 -33.84588 -33.01744 -30.70423 -30.39849 -30.04893 -28.76735 -26.67487 -25.97742 -24.14276 -23.85938 -23.16885 -21.99553 -20.71548 -19.88662 -19.50086 -18.69909 -17.77877 -16.79536 -16.63350 -16.46255 -15.77763 -15.34234 -15.25664 -14.91045 -14.71265 -14.29055 -14.15825 -13.88655 -13.70780 -13.38922 -13.31915 -12.90056 -12.68962 -12.35632 -12.31860 -12.12556 -11.99395 -11.77543 -11.75971 -11.20907 -11.17561 -10.95140 -10.65292 -10.56912 -10.17307 -10.11682 -10.05426 -9.72186 -9.68040 -9.61435 -9.45128 -9.29090 -8.83945 -8.54648 -8.34948 -7.97720 -6.53537 -5.52485 -2.96204 1.66842 2.10779 2.38023 3.38175 3.50856 3.59639 3.60961 4.01644 4.22140 4.33190 4.49870 4.68966 4.77272 4.83663 4.86960 4.91449 4.91728 5.18170 5.22673 5.27727 5.46391 5.53827 5.56022 5.62045 5.67055 5.72848 5.92403 5.98584 6.20227 6.29800 6.40160 6.45326 6.49850 6.58218 6.60761 6.70844 6.80909 6.94428 7.02910 7.07283 7.20602 7.27035 7.44490 7.53439 7.73619 7.78776 8.03848 8.49904 8.62526 9.22294 9.42199 10.04803 10.57594 11.51952 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015467 B = 0.002734 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.888565 B =10237.409312 C =11560.830880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.051 3.949 4 C 0.137 3.863 5 N -0.368 5.368 6 C 0.120 3.880 7 C -0.274 4.274 8 C 0.569 3.431 9 O -0.493 6.493 10 N -0.730 5.730 11 C 0.132 3.868 12 H 0.129 0.871 13 C -0.123 4.123 14 C -0.105 4.105 15 C -0.144 4.144 16 C 0.158 3.842 17 N -0.580 5.580 18 C -0.277 4.277 19 H 0.065 0.935 20 C 0.011 3.989 21 N -0.856 5.856 22 Si 0.887 3.113 23 H -0.282 1.282 24 H -0.294 1.294 25 H -0.292 1.292 26 C 0.158 3.842 27 C 0.079 3.921 28 N -0.306 5.306 29 H 0.043 0.957 30 H 0.089 0.911 31 H 0.044 0.956 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.187 0.813 37 H 0.379 0.621 38 H 0.060 0.940 39 H 0.052 0.948 40 H 0.075 0.925 41 H 0.035 0.965 42 H 0.050 0.950 43 H 0.041 0.959 44 H 0.030 0.970 45 H 0.025 0.975 46 H 0.261 0.739 47 H 0.094 0.906 48 H 0.003 0.997 49 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.130 -5.491 -8.657 19.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.309 6.309 3 C -0.026 4.026 4 C 0.015 3.985 5 N -0.149 5.149 6 C -0.029 4.029 7 C -0.289 4.289 8 C 0.353 3.647 9 O -0.367 6.367 10 N -0.381 5.381 11 C 0.028 3.972 12 H 0.146 0.854 13 C -0.161 4.161 14 C -0.143 4.143 15 C -0.186 4.186 16 C 0.028 3.972 17 N -0.302 5.302 18 C -0.406 4.406 19 H 0.082 0.918 20 C -0.191 4.191 21 N -0.497 5.497 22 Si 0.717 3.283 23 H -0.207 1.207 24 H -0.221 1.221 25 H -0.219 1.219 26 C 0.033 3.967 27 C -0.109 4.109 28 N -0.126 5.126 29 H 0.062 0.938 30 H 0.108 0.892 31 H 0.063 0.937 32 H 0.085 0.915 33 H 0.074 0.926 34 H 0.126 0.874 35 H 0.114 0.886 36 H 0.204 0.796 37 H 0.211 0.789 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.094 0.906 41 H 0.054 0.946 42 H 0.069 0.931 43 H 0.059 0.941 44 H 0.049 0.951 45 H 0.043 0.957 46 H 0.072 0.928 47 H 0.112 0.888 48 H 0.021 0.979 49 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -16.526 -6.770 -8.629 19.834 hybrid contribution 0.654 0.232 0.669 0.964 sum -15.872 -6.538 -7.960 18.922 Atomic orbital electron populations 1.22773 0.80037 1.03048 1.00368 1.87779 1.20511 1.27044 1.95606 1.22665 0.92670 0.85219 1.02054 1.21417 0.92491 0.79070 1.05533 1.48217 1.33677 1.11941 1.21088 1.23000 0.90929 0.94660 0.94317 1.20751 1.09312 0.96400 1.02419 1.17233 0.81360 0.81695 0.84406 1.90984 1.47114 1.74270 1.24292 1.46236 1.46750 1.13921 1.31236 1.21139 0.88961 0.85298 1.01763 0.85369 1.21387 0.98995 0.96719 0.98965 1.21321 0.95847 0.98697 0.98405 1.22910 0.97017 0.97723 1.00917 1.20407 0.96043 0.85794 0.94906 1.44037 1.43427 1.00256 1.42446 1.19017 0.99913 1.07657 1.14036 0.91759 1.24990 0.95548 1.00452 0.98102 1.69859 1.14522 1.22807 1.42463 0.86498 0.82478 0.80461 0.78860 1.20735 1.22129 1.21880 1.20430 0.88010 0.97597 0.90626 1.24071 0.93930 0.97527 0.95335 1.77065 1.25018 0.97049 1.13434 0.93803 0.89218 0.93748 0.91541 0.92553 0.87420 0.88608 0.79573 0.78915 0.92094 0.92891 0.90644 0.94583 0.93086 0.94053 0.95125 0.95665 0.92784 0.88753 0.97882 0.79560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.46 10.70 -35.23 -0.38 -3.84 16 3 C 0.05 0.44 6.12 37.16 0.23 0.67 16 4 C 0.14 1.20 6.86 -4.04 -0.03 1.17 16 5 N -0.37 -4.36 3.65 -60.80 -0.22 -4.59 16 6 C 0.12 1.61 11.25 -16.56 -0.19 1.43 16 7 C -0.27 -4.16 6.13 -105.07 -0.64 -4.80 16 8 C 0.57 10.80 7.65 -12.52 -0.10 10.70 16 9 O -0.49 -11.64 14.17 5.28 0.07 -11.57 16 10 N -0.73 -12.72 4.90 -58.29 -0.29 -13.01 16 11 C 0.13 2.72 1.82 -71.38 -0.13 2.59 16 12 H 0.13 3.26 4.60 -51.93 -0.24 3.02 16 13 C -0.12 -2.15 5.24 -28.32 -0.15 -2.30 16 14 C -0.10 -1.97 5.66 -27.10 -0.15 -2.13 16 15 C -0.14 -2.71 6.41 -24.76 -0.16 -2.87 16 16 C 0.16 3.30 5.17 -4.66 -0.02 3.28 16 17 N -0.58 -14.27 2.60 -175.07 -0.45 -14.73 16 18 C -0.28 -7.59 9.61 -15.06 -0.14 -7.74 16 19 H 0.06 1.78 7.90 -52.48 -0.41 1.37 16 20 C 0.01 0.31 4.85 -17.43 -0.08 0.22 16 21 N -0.86 -24.24 7.78 55.49 0.43 -23.80 16 22 Si 0.89 22.22 29.60 -169.99 -5.03 17.19 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 25 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 26 C 0.16 3.70 4.63 -5.20 -0.02 3.68 16 27 C 0.08 1.01 11.50 -16.98 -0.20 0.81 16 28 N -0.31 -3.99 12.34 30.86 0.38 -3.61 16 29 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.11 0.75 8.06 -51.93 -0.42 0.33 16 35 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.19 2.23 8.06 -52.48 -0.42 1.81 16 37 H 0.38 5.19 7.53 -40.82 -0.31 4.88 16 38 H 0.06 1.03 6.27 -51.93 -0.33 0.70 16 39 H 0.05 0.81 8.03 -51.93 -0.42 0.39 16 40 H 0.07 1.71 6.82 -51.93 -0.35 1.35 16 41 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.03 0.65 7.99 -51.93 -0.41 0.23 16 45 H 0.03 0.49 6.88 -51.93 -0.36 0.13 16 46 H 0.26 7.57 8.06 -40.82 -0.33 7.24 16 47 H 0.09 2.58 5.79 -51.93 -0.30 2.28 16 48 H 0.00 0.07 8.12 -51.93 -0.42 -0.35 16 49 H 0.19 1.77 7.50 -52.49 -0.39 1.38 16 LS Contribution 385.86 15.07 5.81 5.81 Total: -1.00 -32.72 385.86 -8.06 -40.78 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: -7.72 Total: 5.31 kcal Atomic # 6 Polarization: 6.72 SS G_CDS: -0.68 Total: 6.04 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: -0.15 Total: -59.73 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.30 Total: -15.41 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.03 Total: 17.19 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.72 -8.06 -40.78 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034509966.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.134 kcal (2) G-P(sol) polarization free energy of solvation -32.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds