Wall clock time and date at job start Tue Mar 31 2020 19:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00114 * 2 1 4 4 C 1.53003 * 109.46905 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.46968 * 179.97438 * 4 3 2 6 6 C 1.34263 * 125.75664 * 124.99813 * 5 4 3 7 7 C 1.38046 * 107.41912 * 179.97438 * 6 5 4 8 8 C 1.47422 * 126.41354 * 179.97438 * 7 6 5 9 9 O 1.21602 * 120.00115 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99988 * 179.97438 * 8 7 6 11 11 C 1.46501 * 120.00313 * 180.02562 * 10 8 7 12 12 H 1.08998 * 108.45485 * 325.00643 * 11 10 8 13 13 C 1.52523 * 108.52147 * 207.28775 * 11 10 8 14 14 C 1.50310 * 105.32402 * 149.24385 * 13 11 10 15 15 C 1.54845 * 110.69096 * 97.83966 * 14 13 11 16 16 C 1.54894 * 110.14312 * 321.12899 * 15 14 13 17 17 N 1.43438 * 116.08172 * 318.63878 * 16 15 14 18 18 C 1.36930 * 120.54230 * 271.59337 * 17 16 15 19 19 H 1.08003 * 119.99804 * 336.25351 * 18 17 16 20 20 C 1.38812 * 120.00506 * 156.25146 * 18 17 16 21 21 N 1.31617 * 119.99645 * 338.60461 * 20 18 17 22 22 Si 1.86797 * 120.00143 * 158.60258 * 20 18 17 23 23 H 1.48506 * 109.47252 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.47309 * 120.00186 * 22 20 18 25 25 H 1.48502 * 109.47206 * 240.00189 * 22 20 18 26 26 C 1.46245 * 108.51798 * 82.71319 * 11 10 8 27 27 C 1.41292 * 107.16948 * 359.97438 * 7 6 5 28 28 N 1.30456 * 108.02237 * 359.74570 * 27 7 6 29 29 H 1.08998 * 109.46821 * 300.00456 * 1 2 3 30 30 H 1.08994 * 109.47408 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47023 * 60.00011 * 1 2 3 32 32 H 1.08999 * 109.47037 * 299.99317 * 3 2 1 33 33 H 1.08994 * 109.47550 * 59.99990 * 3 2 1 34 34 H 1.09005 * 109.46921 * 299.99544 * 4 3 2 35 35 H 1.08997 * 109.47654 * 59.99325 * 4 3 2 36 36 H 1.08006 * 126.28852 * 359.95335 * 6 5 4 37 37 H 0.97001 * 119.99511 * 0.02562 * 10 8 7 38 38 H 1.08995 * 110.25210 * 268.32519 * 13 11 10 39 39 H 1.08998 * 110.24798 * 30.38453 * 13 11 10 40 40 H 1.08996 * 109.27321 * 337.53536 * 14 13 11 41 41 H 1.09000 * 109.23162 * 218.11934 * 14 13 11 42 42 H 1.08998 * 109.35631 * 200.92468 * 15 14 13 43 43 H 1.08996 * 109.24860 * 81.26723 * 15 14 13 44 44 H 1.09002 * 108.16517 * 196.92115 * 16 15 14 45 45 H 1.09007 * 108.16178 * 80.35618 * 16 15 14 46 46 H 0.97007 * 119.99719 * 179.97438 * 21 20 18 47 47 H 1.08995 * 109.84725 * 299.15440 * 26 11 10 48 48 H 1.09002 * 109.84375 * 60.14089 * 26 11 10 49 49 H 1.07999 * 125.98974 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 7 4.1314 2.5229 -0.0013 6 6 5.0218 2.9856 0.8907 7 6 5.3275 4.2837 0.5342 8 6 6.2631 5.1853 1.2306 9 8 6.8525 4.8016 2.2227 10 7 6.4660 6.4346 0.7673 11 6 7.3961 7.3305 1.4591 12 1 7.3349 7.1321 2.5291 13 6 6.9599 8.7702 1.2073 14 6 7.3724 9.5309 2.4362 15 6 8.7218 10.2544 2.2046 16 6 9.6736 9.3557 1.3766 17 7 9.6867 7.9637 1.7226 18 6 10.5354 7.4951 2.6896 19 1 11.4377 8.0395 2.9261 20 6 10.2361 6.3204 3.3659 21 7 8.9956 5.8825 3.4069 22 14 11.5939 5.3612 4.2177 23 1 12.8899 6.0603 4.0249 24 1 11.2957 5.2639 5.6691 25 1 11.6757 3.9970 3.6367 26 6 8.7540 7.0288 1.0076 27 6 4.5759 4.5864 -0.6233 28 7 3.8738 3.5321 -0.9357 29 1 -0.3633 0.5139 0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8463 -0.8900 33 1 1.6887 1.8464 0.8899 34 1 3.8574 0.6435 0.8892 35 1 3.8568 0.6437 -0.8907 36 1 5.4246 2.4422 1.7328 37 1 5.9961 6.7405 -0.0242 38 1 7.4642 9.1687 0.3270 39 1 5.8786 8.8198 1.0792 40 1 7.4760 8.8375 3.2708 41 1 6.6065 10.2686 2.6758 42 1 9.1819 10.4775 3.1672 43 1 8.5429 11.1845 1.6654 44 1 10.6868 9.7424 1.4858 45 1 9.3944 9.4420 0.3264 46 1 8.7865 5.0613 3.8792 47 1 9.0048 5.9968 1.2528 48 1 8.8289 7.1829 -0.0689 49 1 4.5841 5.5246 -1.1581 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034509966.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:19:37 Heat of formation + Delta-G solvation = 15.010155 kcal Electronic energy + Delta-G solvation = -29794.854657 eV Core-core repulsion = 25759.458996 eV Total energy + Delta-G solvation = -4035.395661 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.33146 -40.52483 -39.03756 -38.69554 -35.62024 -34.94387 -34.68758 -32.57337 -31.70621 -31.20498 -29.84582 -27.87614 -27.23824 -25.77266 -25.04109 -24.37559 -23.43023 -21.74902 -21.40348 -20.93698 -20.24393 -18.86029 -18.45921 -17.58975 -17.32464 -16.87111 -16.66102 -16.51151 -16.32825 -15.97564 -15.72324 -15.41317 -15.29855 -15.05751 -14.86660 -14.55094 -14.25298 -13.91087 -13.83772 -13.65670 -13.39269 -13.16251 -13.03419 -12.98701 -12.70284 -12.62039 -12.36336 -12.34022 -12.04105 -11.90589 -11.79836 -11.55335 -11.22619 -11.11784 -11.03526 -10.79077 -10.57863 -10.42302 -10.29789 -9.76742 -9.51265 -8.48366 -7.61857 -5.06533 0.60304 1.22511 1.29611 1.46117 1.50179 1.58167 2.58335 2.69684 2.72970 2.84657 3.45063 3.53248 3.82228 3.82700 3.88430 3.96204 4.10960 4.18808 4.26962 4.30327 4.35727 4.37582 4.44977 4.49267 4.61808 4.67856 4.68955 4.74630 4.80966 4.81732 4.90123 4.92905 5.00327 5.11952 5.34987 5.44254 5.45755 5.50825 5.54113 5.71704 5.76256 5.80209 5.84601 6.02223 6.07842 6.11094 6.52969 6.55033 7.08893 7.31395 7.88086 8.04554 8.54534 9.35855 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015467 B = 0.002734 C = 0.002421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.888565 B =10237.409312 C =11560.830880 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.406 6.406 3 C 0.059 3.941 4 C 0.130 3.870 5 N -0.359 5.359 6 C 0.124 3.876 7 C -0.300 4.300 8 C 0.566 3.434 9 O -0.550 6.550 10 N -0.717 5.717 11 C 0.143 3.857 12 H 0.080 0.920 13 C -0.110 4.110 14 C -0.101 4.101 15 C -0.137 4.137 16 C 0.150 3.850 17 N -0.596 5.596 18 C -0.284 4.284 19 H 0.056 0.944 20 C -0.034 4.034 21 N -0.861 5.861 22 Si 0.938 3.062 23 H -0.274 1.274 24 H -0.298 1.298 25 H -0.300 1.300 26 C 0.166 3.834 27 C 0.090 3.910 28 N -0.316 5.316 29 H 0.049 0.951 30 H 0.104 0.896 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.126 0.874 35 H 0.104 0.896 36 H 0.195 0.805 37 H 0.401 0.599 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.027 0.973 41 H 0.064 0.936 42 H 0.032 0.968 43 H 0.080 0.920 44 H 0.024 0.976 45 H 0.049 0.951 46 H 0.246 0.754 47 H 0.048 0.952 48 H 0.020 0.980 49 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.799 -4.602 -10.617 21.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.018 4.018 4 C 0.010 3.990 5 N -0.140 5.140 6 C -0.027 4.027 7 C -0.315 4.315 8 C 0.352 3.648 9 O -0.427 6.427 10 N -0.370 5.370 11 C 0.038 3.962 12 H 0.098 0.902 13 C -0.148 4.148 14 C -0.139 4.139 15 C -0.177 4.177 16 C 0.022 3.978 17 N -0.318 5.318 18 C -0.414 4.414 19 H 0.074 0.926 20 C -0.235 4.235 21 N -0.502 5.502 22 Si 0.768 3.232 23 H -0.199 1.199 24 H -0.226 1.226 25 H -0.227 1.227 26 C 0.041 3.959 27 C -0.098 4.098 28 N -0.136 5.136 29 H 0.067 0.933 30 H 0.123 0.877 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.144 0.856 35 H 0.123 0.877 36 H 0.212 0.788 37 H 0.237 0.763 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.045 0.955 41 H 0.083 0.917 42 H 0.051 0.949 43 H 0.099 0.901 44 H 0.042 0.958 45 H 0.067 0.933 46 H 0.056 0.944 47 H 0.067 0.933 48 H 0.038 0.962 49 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -18.235 -5.856 -10.648 21.913 hybrid contribution 1.139 -0.084 1.237 1.684 sum -17.096 -5.940 -9.411 20.399 Atomic orbital electron populations 1.22972 0.78668 1.04290 1.00955 1.87754 1.22048 1.26968 1.95679 1.22524 0.92384 0.85261 1.01644 1.21695 0.92708 0.77689 1.06933 1.48413 1.32842 1.12600 1.20114 1.23166 0.90668 0.94407 0.94452 1.20465 1.10326 0.96702 1.03989 1.17744 0.81081 0.82156 0.83781 1.90960 1.49496 1.75344 1.26894 1.45983 1.46073 1.13278 1.31679 1.20634 0.88423 0.87900 0.99208 0.90162 1.21317 1.00974 0.93690 0.98792 1.21251 0.96822 0.98464 0.97388 1.22816 0.96153 0.98693 1.00084 1.20570 0.96523 0.84165 0.96526 1.44151 1.43653 1.02086 1.41955 1.19130 1.00225 1.07809 1.14269 0.92607 1.25562 0.97027 1.01498 0.99388 1.70080 1.15328 1.21935 1.42863 0.85688 0.80974 0.78940 0.77596 1.19918 1.22575 1.22743 1.20272 0.89351 0.95064 0.91164 1.24472 0.92542 0.98526 0.94223 1.77058 1.25291 0.97340 1.13888 0.93265 0.87737 0.93115 0.92107 0.92783 0.85580 0.87739 0.78839 0.76333 0.90374 0.89915 0.95462 0.91708 0.94886 0.90130 0.95756 0.93277 0.94386 0.93319 0.96223 0.76536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.54 16 2 O -0.41 -6.58 10.70 -148.98 -1.59 -8.17 16 3 C 0.06 0.94 6.12 71.98 0.44 1.38 16 4 C 0.13 2.07 6.86 86.38 0.59 2.67 16 5 N -0.36 -8.02 3.65 -346.28 -1.26 -9.29 16 6 C 0.12 3.27 11.25 84.28 0.95 4.22 16 7 C -0.30 -8.93 6.13 -20.15 -0.12 -9.05 16 8 C 0.57 21.84 7.65 86.66 0.66 22.50 16 9 O -0.55 -27.29 14.17 -4.04 -0.06 -27.34 16 10 N -0.72 -24.51 4.90 -456.60 -2.24 -26.75 16 11 C 0.14 5.89 1.82 42.75 0.08 5.97 16 12 H 0.08 4.24 4.60 -2.39 -0.01 4.23 16 13 C -0.11 -3.55 5.24 29.57 0.16 -3.39 16 14 C -0.10 -3.64 5.66 30.36 0.17 -3.47 16 15 C -0.14 -4.85 6.41 31.87 0.20 -4.64 16 16 C 0.15 6.07 5.17 87.59 0.45 6.52 16 17 N -0.60 -29.56 2.60 -707.81 -1.84 -31.39 16 18 C -0.28 -15.98 9.61 84.03 0.81 -15.17 16 19 H 0.06 3.17 7.90 -2.91 -0.02 3.15 16 20 C -0.03 -1.98 4.85 84.86 0.41 -1.57 16 21 N -0.86 -51.24 7.78 21.65 0.17 -51.07 16 22 Si 0.94 47.38 29.60 68.60 2.03 49.41 16 23 H -0.27 -13.36 7.11 99.48 0.71 -12.65 16 24 H -0.30 -15.15 7.11 99.48 0.71 -14.44 16 25 H -0.30 -15.42 7.11 99.48 0.71 -14.71 16 26 C 0.17 7.85 4.63 83.58 0.39 8.23 16 27 C 0.09 2.10 11.50 85.65 0.99 3.09 16 28 N -0.32 -7.63 12.34 -56.27 -0.69 -8.33 16 29 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.05 0.87 8.14 -2.39 -0.02 0.86 16 34 H 0.13 1.55 8.06 -2.38 -0.02 1.53 16 35 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.19 4.69 8.06 -2.91 -0.02 4.67 16 37 H 0.40 9.99 7.53 -92.71 -0.70 9.29 16 38 H 0.08 2.30 6.27 -2.39 -0.01 2.28 16 39 H 0.08 2.20 8.03 -2.39 -0.02 2.18 16 40 H 0.03 1.24 6.82 -2.39 -0.02 1.23 16 41 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.02 1.00 7.99 -2.39 -0.02 0.98 16 45 H 0.05 1.75 6.88 -2.38 -0.02 1.73 16 46 H 0.25 15.11 8.06 -92.70 -0.75 14.37 16 47 H 0.05 2.76 5.79 -2.39 -0.01 2.74 16 48 H 0.02 0.85 8.12 -2.39 -0.02 0.83 16 49 H 0.22 3.40 7.50 -2.91 -0.02 3.38 16 Total: -1.00 -75.12 385.86 2.22 -72.90 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.28 Total: 21.20 kcal Atomic # 6 Polarization: 11.41 SS G_CDS: 7.42 Total: 18.83 kcal Atomic # 7 Polarization: -120.97 SS G_CDS: -5.86 Total: -126.83 kcal Atomic # 8 Polarization: -33.86 SS G_CDS: -1.65 Total: -35.51 kcal Atomic # 14 Polarization: 47.38 SS G_CDS: 2.03 Total: 49.41 kcal Total: -75.12 2.22 -72.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034509966.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.910 kcal (2) G-P(sol) polarization free energy of solvation -75.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.900 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds