Wall clock time and date at job start Tue Mar 31 2020 19:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46728 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46684 * 179.97438 * 4 3 2 6 6 C 1.35041 * 124.88092 * 124.72244 * 5 4 3 7 7 C 1.35359 * 107.22589 * 179.89356 * 6 5 4 8 8 C 1.41503 * 105.50398 * 0.35170 * 7 6 5 9 9 C 1.47716 * 126.51797 * 179.77526 * 8 7 6 10 10 O 1.21571 * 119.99930 * 359.97300 * 9 8 7 11 11 N 1.34771 * 120.00017 * 179.97438 * 9 8 7 12 12 C 1.46501 * 120.00105 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.46813 * 35.00321 * 12 11 9 14 14 C 1.53006 * 109.47211 * 154.99894 * 12 11 9 15 15 C 1.52992 * 109.47140 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47317 * 299.99878 * 15 14 12 17 17 H 1.09007 * 109.47135 * 300.00373 * 16 15 14 18 18 N 1.46501 * 109.47466 * 180.02562 * 16 15 14 19 19 C 1.36940 * 119.99868 * 155.00045 * 18 16 15 20 20 H 1.07998 * 120.00383 * 0.02562 * 19 18 16 21 21 C 1.38814 * 119.99501 * 179.97438 * 19 18 16 22 22 N 1.31616 * 120.00334 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99452 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46826 * 90.00602 * 23 21 19 25 25 H 1.48504 * 109.46924 * 209.99737 * 23 21 19 26 26 H 1.48489 * 109.47301 * 329.99876 * 23 21 19 27 27 C 1.53004 * 109.47279 * 59.99913 * 16 15 14 28 28 C 1.52996 * 109.47199 * 274.99656 * 12 11 9 29 29 N 1.28465 * 124.88792 * 305.02397 * 5 4 3 30 30 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 31 31 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 32 32 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47187 * 300.00233 * 3 2 1 34 34 H 1.09001 * 109.46558 * 60.00281 * 3 2 1 35 35 H 1.09000 * 109.47486 * 300.00062 * 4 3 2 36 36 H 1.09001 * 109.47362 * 60.00784 * 4 3 2 37 37 H 1.08000 * 126.38767 * 0.02562 * 6 5 4 38 38 H 1.08005 * 127.24982 * 180.15917 * 7 6 5 39 39 H 0.97004 * 120.00006 * 0.02562 * 11 9 8 40 40 H 1.08999 * 109.46948 * 300.00119 * 14 12 11 41 41 H 1.09000 * 109.46933 * 59.99685 * 14 12 11 42 42 H 1.09000 * 109.47649 * 59.99898 * 15 14 12 43 43 H 1.09005 * 109.47462 * 180.02562 * 15 14 12 44 44 H 0.96990 * 119.99624 * 334.99732 * 18 16 15 45 45 H 0.96994 * 119.99793 * 180.02562 * 22 21 19 46 46 H 1.08999 * 109.46644 * 59.99804 * 27 16 15 47 47 H 1.08999 * 109.47311 * 180.02562 * 27 16 15 48 48 H 1.08993 * 109.47424 * 300.00252 * 28 12 11 49 49 H 1.09007 * 109.46796 * 60.00242 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1312 2.5231 0.0000 6 6 5.0214 2.9726 0.9106 7 6 5.3343 4.2450 0.5711 8 6 4.5721 4.5256 -0.5876 9 6 4.5573 5.7943 -1.3440 10 8 5.2487 6.7263 -0.9815 11 7 3.7774 5.9187 -2.4360 12 6 3.7622 7.1772 -3.1859 13 1 4.7576 7.6210 -3.1708 14 6 3.3478 6.9035 -4.6332 15 6 3.3327 8.2177 -5.4165 16 6 2.3344 9.1829 -4.7740 17 1 1.3388 8.7393 -4.7892 18 7 2.3194 10.4410 -5.5244 19 6 1.2090 11.2419 -5.4961 20 1 0.3445 10.9463 -4.9203 21 6 1.1951 12.4343 -6.2067 22 7 2.2488 12.7948 -6.9080 23 14 -0.3200 13.5264 -6.1687 24 1 -0.2093 14.4874 -5.0420 25 1 -0.4238 14.2735 -7.4479 26 1 -1.5310 12.6868 -5.9861 27 6 2.7487 9.4565 -3.3268 28 6 2.7636 8.1418 -2.5433 29 7 3.8779 3.4398 -0.8636 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6885 1.8465 -0.8900 34 1 1.6885 1.8463 0.8900 35 1 3.8567 0.6439 0.8908 36 1 3.8574 0.6437 -0.8892 37 1 5.4126 2.4192 1.7515 38 1 6.0189 4.9077 1.0796 39 1 3.2254 5.1752 -2.7251 40 1 4.0592 6.2163 -5.0910 41 1 2.3525 6.4595 -4.6483 42 1 4.3282 8.6613 -5.4013 43 1 3.0370 8.0228 -6.4474 44 1 3.0960 10.7067 -6.0411 45 1 2.2392 13.6282 -7.4042 46 1 3.7443 9.9000 -3.3116 47 1 2.0373 10.1438 -2.8689 48 1 1.7683 7.6979 -2.5584 49 1 3.0589 8.3368 -1.5122 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034690084.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:02 Heat of formation + Delta-G solvation = -0.497663 kcal Electronic energy + Delta-G solvation = -28420.715125 eV Core-core repulsion = 24384.646994 eV Total energy + Delta-G solvation = -4036.068131 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.00899 -39.74475 -38.58748 -37.80992 -34.79960 -34.41756 -32.98215 -31.18227 -30.59952 -30.33995 -29.85029 -27.50966 -26.80819 -24.77900 -23.55071 -22.61104 -22.21847 -21.75017 -20.86006 -20.09880 -19.36379 -18.24805 -17.39153 -16.99145 -16.78290 -16.54094 -16.12137 -16.04046 -15.35807 -15.02844 -14.70314 -14.40674 -14.16809 -13.89504 -13.67735 -13.66291 -13.49632 -13.40972 -12.96364 -12.61531 -12.48054 -12.25495 -11.96502 -11.95966 -11.74483 -11.39682 -11.22902 -10.98289 -10.78473 -10.71062 -10.63168 -10.36879 -10.16448 -10.07991 -10.01277 -9.70158 -9.61534 -9.54603 -9.40992 -8.88996 -8.79323 -6.89186 -5.71244 -2.99390 1.31238 1.80813 1.87979 3.08730 3.25281 3.36491 3.46820 3.51760 3.53354 3.91171 4.20702 4.37045 4.43331 4.54608 4.63368 4.74736 4.76922 4.86738 4.98603 4.99070 5.10261 5.12094 5.13529 5.33604 5.37191 5.47291 5.57275 5.68364 5.74749 5.80146 5.91564 5.94542 6.05573 6.10929 6.30453 6.31613 6.33737 6.37283 6.42143 6.55184 6.63697 6.72159 6.79142 7.05242 7.21398 7.39276 7.67253 7.75191 8.22171 8.47797 9.58595 10.17830 10.52450 11.51582 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015863 B = 0.001980 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.716176 B =14136.215964 C =15193.877587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.391 6.391 3 C 0.049 3.951 4 C 0.125 3.875 5 N -0.283 5.283 6 C -0.016 4.016 7 C -0.177 4.177 8 C -0.009 4.009 9 C 0.601 3.399 10 O -0.530 6.530 11 N -0.712 5.712 12 C 0.145 3.855 13 H 0.089 0.911 14 C -0.118 4.118 15 C -0.120 4.120 16 C 0.177 3.823 17 H 0.046 0.954 18 N -0.726 5.726 19 C -0.235 4.235 20 H 0.069 0.931 21 C -0.016 4.016 22 N -0.933 5.933 23 Si 0.905 3.095 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.283 1.283 27 C -0.132 4.132 28 C -0.124 4.124 29 N -0.263 5.263 30 H 0.044 0.956 31 H 0.047 0.953 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.113 0.887 36 H 0.103 0.897 37 H 0.184 0.816 38 H 0.164 0.836 39 H 0.403 0.597 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.383 0.617 45 H 0.254 0.746 46 H 0.057 0.943 47 H 0.063 0.937 48 H 0.058 0.942 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.477 -29.553 16.430 33.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.309 6.309 3 C -0.029 4.029 4 C 0.004 3.996 5 N -0.073 5.073 6 C -0.158 4.158 7 C -0.205 4.205 8 C -0.170 4.170 9 C 0.385 3.615 10 O -0.404 6.404 11 N -0.362 5.362 12 C 0.042 3.958 13 H 0.107 0.893 14 C -0.157 4.157 15 C -0.159 4.159 16 C 0.067 3.933 17 H 0.064 0.936 18 N -0.366 5.366 19 C -0.366 4.366 20 H 0.087 0.913 21 C -0.212 4.212 22 N -0.582 5.582 23 Si 0.737 3.263 24 H -0.218 1.218 25 H -0.219 1.219 26 H -0.208 1.208 27 C -0.173 4.173 28 C -0.163 4.163 29 N -0.099 5.099 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.110 0.890 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.131 0.869 36 H 0.122 0.878 37 H 0.201 0.799 38 H 0.182 0.818 39 H 0.237 0.763 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.086 0.914 44 H 0.217 0.783 45 H 0.064 0.936 46 H 0.076 0.924 47 H 0.082 0.918 48 H 0.077 0.923 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.079 -29.513 15.916 33.595 hybrid contribution -0.487 0.864 0.440 1.085 sum 1.591 -28.648 16.356 33.027 Atomic orbital electron populations 1.22808 0.79612 1.03270 1.00618 1.87770 1.20842 1.26610 1.95648 1.22652 0.92081 0.85689 1.02441 1.21683 0.93120 0.78504 1.06253 1.45305 1.31486 1.11477 1.19034 1.22895 0.97983 0.96664 0.98240 1.21829 1.04444 0.95989 0.98244 1.22088 1.01358 0.94027 0.99519 1.16884 0.79803 0.84749 0.80045 1.90818 1.42523 1.39187 1.67917 1.46019 1.45104 1.17039 1.28016 1.21161 1.01024 0.83154 0.90497 0.89257 1.21746 1.01514 0.98789 0.93652 1.21749 1.00754 0.94194 0.99191 1.20248 0.96036 0.87298 0.89736 0.93626 1.42432 1.17373 1.19904 1.56871 1.19243 0.93522 0.99806 1.24066 0.91254 1.24740 0.97620 0.98419 1.00391 1.69660 1.28794 1.24194 1.35564 0.86211 0.82491 0.80748 0.76883 1.21792 1.21851 1.20844 1.22229 1.01945 0.95017 0.98066 1.21912 0.98376 0.96485 0.99531 1.73467 1.22749 0.97770 1.15889 0.93705 0.93450 0.89039 0.91159 0.92424 0.86907 0.87833 0.79937 0.81810 0.76272 0.91834 0.91568 0.91913 0.91369 0.78305 0.93591 0.92423 0.91822 0.92325 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.26 16 2 O -0.39 -2.47 10.70 -35.23 -0.38 -2.85 16 3 C 0.05 0.28 6.04 37.16 0.22 0.50 16 4 C 0.13 0.59 6.77 -4.04 -0.03 0.56 16 5 N -0.28 -2.17 3.41 -61.33 -0.21 -2.38 16 6 C -0.02 -0.11 11.40 -17.17 -0.20 -0.31 16 7 C -0.18 -1.75 10.81 -39.37 -0.43 -2.18 16 8 C -0.01 -0.11 7.13 -82.76 -0.59 -0.70 16 9 C 0.60 8.59 7.79 -12.39 -0.10 8.49 16 10 O -0.53 -9.33 16.59 5.30 0.09 -9.24 16 11 N -0.71 -9.02 5.07 -54.79 -0.28 -9.30 16 12 C 0.15 2.05 2.45 -67.93 -0.17 1.89 16 13 H 0.09 1.43 7.58 -51.93 -0.39 1.03 16 14 C -0.12 -1.55 5.39 -26.73 -0.14 -1.70 16 15 C -0.12 -1.97 5.39 -26.74 -0.14 -2.12 16 16 C 0.18 3.52 2.77 -67.93 -0.19 3.33 16 17 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 18 N -0.73 -18.38 5.12 -53.42 -0.27 -18.66 16 19 C -0.24 -6.59 9.93 -15.06 -0.15 -6.74 16 20 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 21 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 22 N -0.93 -28.58 13.06 55.49 0.72 -27.85 16 23 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 24 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 27 C -0.13 -2.46 5.51 -26.70 -0.15 -2.61 16 28 C -0.12 -1.93 5.50 -26.71 -0.15 -2.08 16 29 N -0.26 -2.72 11.36 33.42 0.38 -2.34 16 30 H 0.04 0.17 8.14 -51.93 -0.42 -0.26 16 31 H 0.05 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.46 8.08 -51.93 -0.42 0.05 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.11 0.25 8.04 -51.93 -0.42 -0.17 16 36 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.18 0.53 8.06 -52.49 -0.42 0.10 16 38 H 0.16 1.49 8.06 -52.48 -0.42 1.07 16 39 H 0.40 4.32 8.33 -40.82 -0.34 3.98 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 44 H 0.38 10.33 7.80 -40.82 -0.32 10.01 16 45 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 46 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 47 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 48 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.06 0.97 8.14 -51.92 -0.42 0.54 16 LS Contribution 405.58 15.07 6.11 6.11 Total: -1.00 -34.69 405.58 -8.23 -42.93 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: -8.20 Total: 8.84 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: -1.18 Total: -2.95 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: 0.34 Total: -60.53 kcal Atomic # 8 Polarization: -11.80 SS G_CDS: -0.29 Total: -12.09 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.69 -8.23 -42.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034690084.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.430 kcal (2) G-P(sol) polarization free energy of solvation -34.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds