Wall clock time and date at job start Tue Mar 31 2020 19:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46728 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46684 * 179.97438 * 4 3 2 6 6 C 1.35041 * 124.88092 * 124.72244 * 5 4 3 7 7 C 1.35359 * 107.22589 * 179.89356 * 6 5 4 8 8 C 1.41503 * 105.50398 * 0.35170 * 7 6 5 9 9 C 1.47716 * 126.51797 * 179.77526 * 8 7 6 10 10 O 1.21571 * 119.99930 * 359.97300 * 9 8 7 11 11 N 1.34771 * 120.00017 * 179.97438 * 9 8 7 12 12 C 1.46501 * 120.00105 * 179.97438 * 11 9 8 13 13 H 1.08999 * 109.46813 * 35.00321 * 12 11 9 14 14 C 1.53006 * 109.47211 * 154.99894 * 12 11 9 15 15 C 1.52992 * 109.47140 * 180.02562 * 14 12 11 16 16 C 1.52999 * 109.47317 * 299.99878 * 15 14 12 17 17 H 1.09007 * 109.47135 * 300.00373 * 16 15 14 18 18 N 1.46501 * 109.47466 * 180.02562 * 16 15 14 19 19 C 1.36940 * 119.99868 * 155.00045 * 18 16 15 20 20 H 1.07998 * 120.00383 * 0.02562 * 19 18 16 21 21 C 1.38814 * 119.99501 * 179.97438 * 19 18 16 22 22 N 1.31616 * 120.00334 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99452 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46826 * 90.00602 * 23 21 19 25 25 H 1.48504 * 109.46924 * 209.99737 * 23 21 19 26 26 H 1.48489 * 109.47301 * 329.99876 * 23 21 19 27 27 C 1.53004 * 109.47279 * 59.99913 * 16 15 14 28 28 C 1.52996 * 109.47199 * 274.99656 * 12 11 9 29 29 N 1.28465 * 124.88792 * 305.02397 * 5 4 3 30 30 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 31 31 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 32 32 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47187 * 300.00233 * 3 2 1 34 34 H 1.09001 * 109.46558 * 60.00281 * 3 2 1 35 35 H 1.09000 * 109.47486 * 300.00062 * 4 3 2 36 36 H 1.09001 * 109.47362 * 60.00784 * 4 3 2 37 37 H 1.08000 * 126.38767 * 0.02562 * 6 5 4 38 38 H 1.08005 * 127.24982 * 180.15917 * 7 6 5 39 39 H 0.97004 * 120.00006 * 0.02562 * 11 9 8 40 40 H 1.08999 * 109.46948 * 300.00119 * 14 12 11 41 41 H 1.09000 * 109.46933 * 59.99685 * 14 12 11 42 42 H 1.09000 * 109.47649 * 59.99898 * 15 14 12 43 43 H 1.09005 * 109.47462 * 180.02562 * 15 14 12 44 44 H 0.96990 * 119.99624 * 334.99732 * 18 16 15 45 45 H 0.96994 * 119.99793 * 180.02562 * 22 21 19 46 46 H 1.08999 * 109.46644 * 59.99804 * 27 16 15 47 47 H 1.08999 * 109.47311 * 180.02562 * 27 16 15 48 48 H 1.08993 * 109.47424 * 300.00252 * 28 12 11 49 49 H 1.09007 * 109.46796 * 60.00242 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 4.1312 2.5231 0.0000 6 6 5.0214 2.9726 0.9106 7 6 5.3343 4.2450 0.5711 8 6 4.5721 4.5256 -0.5876 9 6 4.5573 5.7943 -1.3440 10 8 5.2487 6.7263 -0.9815 11 7 3.7774 5.9187 -2.4360 12 6 3.7622 7.1772 -3.1859 13 1 4.7576 7.6210 -3.1708 14 6 3.3478 6.9035 -4.6332 15 6 3.3327 8.2177 -5.4165 16 6 2.3344 9.1829 -4.7740 17 1 1.3388 8.7393 -4.7892 18 7 2.3194 10.4410 -5.5244 19 6 1.2090 11.2419 -5.4961 20 1 0.3445 10.9463 -4.9203 21 6 1.1951 12.4343 -6.2067 22 7 2.2488 12.7948 -6.9080 23 14 -0.3200 13.5264 -6.1687 24 1 -0.2093 14.4874 -5.0420 25 1 -0.4238 14.2735 -7.4479 26 1 -1.5310 12.6868 -5.9861 27 6 2.7487 9.4565 -3.3268 28 6 2.7636 8.1418 -2.5433 29 7 3.8779 3.4398 -0.8636 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6885 1.8465 -0.8900 34 1 1.6885 1.8463 0.8900 35 1 3.8567 0.6439 0.8908 36 1 3.8574 0.6437 -0.8892 37 1 5.4126 2.4192 1.7515 38 1 6.0189 4.9077 1.0796 39 1 3.2254 5.1752 -2.7251 40 1 4.0592 6.2163 -5.0910 41 1 2.3525 6.4595 -4.6483 42 1 4.3282 8.6613 -5.4013 43 1 3.0370 8.0228 -6.4474 44 1 3.0960 10.7067 -6.0411 45 1 2.2392 13.6282 -7.4042 46 1 3.7443 9.9000 -3.3116 47 1 2.0373 10.1438 -2.8689 48 1 1.7683 7.6979 -2.5584 49 1 3.0589 8.3368 -1.5122 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034690084.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:01 Heat of formation + Delta-G solvation = -25.349081 kcal Electronic energy + Delta-G solvation = -28421.792763 eV Core-core repulsion = 24384.646994 eV Total energy + Delta-G solvation = -4037.145769 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.67767 -40.91496 -39.22937 -38.95965 -36.38009 -35.03109 -34.59119 -32.54276 -31.69821 -31.67117 -30.56409 -28.94241 -27.32488 -25.89528 -25.04578 -23.69275 -23.32467 -22.42923 -22.15858 -21.21432 -20.65078 -19.20372 -18.81751 -17.96767 -17.43349 -17.26970 -17.03044 -16.83157 -16.63985 -16.12952 -15.75529 -15.53794 -15.38049 -15.16518 -15.00898 -14.75143 -14.57974 -14.28426 -14.10351 -13.89491 -13.46073 -13.16226 -13.09026 -13.01237 -12.82311 -12.62526 -12.45381 -12.34345 -12.31431 -12.13266 -12.03949 -11.92318 -11.67724 -11.48351 -11.23939 -11.15688 -10.83438 -10.77411 -10.34350 -10.13020 -9.96319 -8.98497 -7.92425 -5.20509 0.49133 1.16704 1.32799 1.46752 1.48825 1.56887 2.12151 2.36297 2.57276 2.78776 3.37232 3.40112 3.70765 3.78072 3.83455 3.84570 3.89749 3.99083 4.15262 4.22867 4.29157 4.36733 4.39671 4.45544 4.48465 4.52702 4.59118 4.62983 4.65178 4.67149 4.75037 4.77738 4.85039 4.86822 4.99327 5.10043 5.12869 5.24821 5.27702 5.32246 5.46155 5.52590 5.55267 5.64158 5.80738 6.01555 6.30269 6.45295 6.87891 7.18087 7.35641 8.13297 8.36090 9.31235 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015863 B = 0.001980 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.716176 B =14136.215964 C =15193.877587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.402 6.402 3 C 0.051 3.949 4 C 0.122 3.878 5 N -0.276 5.276 6 C 0.009 3.991 7 C -0.204 4.204 8 C -0.039 4.039 9 C 0.599 3.401 10 O -0.573 6.573 11 N -0.699 5.699 12 C 0.152 3.848 13 H 0.069 0.931 14 C -0.105 4.105 15 C -0.112 4.112 16 C 0.172 3.828 17 H 0.047 0.953 18 N -0.739 5.739 19 C -0.235 4.235 20 H 0.075 0.925 21 C -0.080 4.080 22 N -0.971 5.971 23 Si 0.971 3.029 24 H -0.290 1.290 25 H -0.296 1.296 26 H -0.268 1.268 27 C -0.122 4.122 28 C -0.112 4.112 29 N -0.271 5.271 30 H 0.050 0.950 31 H 0.046 0.954 32 H 0.104 0.896 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.147 0.853 36 H 0.110 0.890 37 H 0.230 0.770 38 H 0.163 0.837 39 H 0.415 0.585 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.055 0.945 43 H 0.068 0.932 44 H 0.372 0.628 45 H 0.250 0.750 46 H 0.041 0.959 47 H 0.042 0.958 48 H 0.073 0.927 49 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.612 -32.825 17.765 37.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.321 6.321 3 C -0.026 4.026 4 C 0.003 3.997 5 N -0.066 5.066 6 C -0.133 4.133 7 C -0.232 4.232 8 C -0.198 4.198 9 C 0.385 3.615 10 O -0.451 6.451 11 N -0.350 5.350 12 C 0.048 3.952 13 H 0.087 0.913 14 C -0.143 4.143 15 C -0.151 4.151 16 C 0.064 3.936 17 H 0.065 0.935 18 N -0.378 5.378 19 C -0.367 4.367 20 H 0.093 0.907 21 C -0.272 4.272 22 N -0.622 5.622 23 Si 0.800 3.200 24 H -0.217 1.217 25 H -0.222 1.222 26 H -0.193 1.193 27 C -0.163 4.163 28 C -0.151 4.151 29 N -0.108 5.108 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.122 0.878 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.165 0.835 36 H 0.128 0.872 37 H 0.246 0.754 38 H 0.180 0.820 39 H 0.252 0.748 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.073 0.927 43 H 0.087 0.913 44 H 0.203 0.797 45 H 0.058 0.942 46 H 0.060 0.940 47 H 0.061 0.939 48 H 0.092 0.908 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.174 -32.857 17.267 37.137 hybrid contribution -0.231 1.736 0.108 1.755 sum 0.943 -31.121 17.376 35.656 Atomic orbital electron populations 1.22959 0.78800 1.04264 1.00881 1.87746 1.21817 1.26820 1.95679 1.22596 0.92781 0.85458 1.01784 1.21979 0.92351 0.77085 1.08312 1.45643 1.30943 1.11773 1.18251 1.23496 0.96080 0.95539 0.98184 1.22026 1.05197 0.97666 0.98266 1.21841 1.03491 0.93785 1.00711 1.17254 0.79041 0.85229 0.80006 1.90786 1.44289 1.40917 1.69088 1.45831 1.44951 1.16688 1.27501 1.20933 0.99459 0.83523 0.91317 0.91255 1.21644 1.03356 0.97221 0.92126 1.21630 0.99100 0.94921 0.99436 1.20488 0.97268 0.85989 0.89855 0.93469 1.42665 1.16295 1.21455 1.57373 1.19622 0.94220 0.99977 1.22887 0.90731 1.25562 1.00594 1.00152 1.00911 1.69820 1.30856 1.24547 1.36957 0.85166 0.79585 0.78826 0.76376 1.21747 1.22223 1.19302 1.22031 1.00242 0.96302 0.97679 1.21769 0.99701 0.95196 0.98428 1.73406 1.22749 0.97830 1.16849 0.93148 0.93510 0.87766 0.92541 0.92442 0.83548 0.87159 0.75393 0.81971 0.74815 0.89480 0.89620 0.92652 0.91303 0.79677 0.94154 0.94019 0.93927 0.90786 0.93286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 113.37 1.25 1.44 16 2 O -0.40 -4.21 10.70 -148.98 -1.59 -5.81 16 3 C 0.05 0.47 6.04 71.98 0.43 0.91 16 4 C 0.12 0.74 6.77 86.38 0.58 1.33 16 5 N -0.28 -3.43 3.41 -347.94 -1.19 -4.62 16 6 C 0.01 0.10 11.40 83.53 0.95 1.05 16 7 C -0.20 -3.78 10.81 22.41 0.24 -3.54 16 8 C -0.04 -0.91 7.13 42.46 0.30 -0.61 16 9 C 0.60 17.17 7.79 86.75 0.68 17.85 16 10 O -0.57 -20.83 16.59 -3.94 -0.07 -20.90 16 11 N -0.70 -17.11 5.07 -445.53 -2.26 -19.37 16 12 C 0.15 4.21 2.45 44.99 0.11 4.32 16 13 H 0.07 2.25 7.58 -2.39 -0.02 2.23 16 14 C -0.11 -2.55 5.39 30.59 0.16 -2.39 16 15 C -0.11 -3.61 5.39 30.59 0.16 -3.45 16 16 C 0.17 6.87 2.77 44.99 0.12 7.00 16 17 H 0.05 1.88 8.08 -2.38 -0.02 1.86 16 18 N -0.74 -38.17 5.12 -322.92 -1.65 -39.82 16 19 C -0.24 -13.32 9.93 84.03 0.83 -12.48 16 20 H 0.07 4.06 7.83 -2.91 -0.02 4.04 16 21 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 22 N -0.97 -60.79 13.06 21.65 0.28 -60.50 16 23 Si 0.97 47.17 29.55 68.60 2.03 49.20 16 24 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 25 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 26 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 27 C -0.12 -4.65 5.51 30.61 0.17 -4.48 16 28 C -0.11 -3.46 5.50 30.61 0.17 -3.29 16 29 N -0.27 -5.16 11.36 -48.17 -0.55 -5.71 16 30 H 0.05 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 32 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.06 0.67 8.08 -2.39 -0.02 0.65 16 34 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.15 -0.04 8.04 -2.39 -0.02 -0.06 16 36 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.23 0.13 8.06 -2.91 -0.02 0.10 16 38 H 0.16 2.93 8.06 -2.91 -0.02 2.90 16 39 H 0.42 8.17 8.33 -92.71 -0.77 7.40 16 40 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 43 H 0.07 2.23 8.14 -2.38 -0.02 2.21 16 44 H 0.37 20.67 7.80 -92.72 -0.72 19.94 16 45 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 46 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 47 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 48 H 0.07 2.07 8.14 -2.39 -0.02 2.06 16 49 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 Total: -1.00 -77.48 405.58 1.10 -76.38 By element: Atomic # 1 Polarization: 32.30 SS G_CDS: -0.54 Total: 31.76 kcal Atomic # 6 Polarization: -7.25 SS G_CDS: 6.64 Total: -0.61 kcal Atomic # 7 Polarization: -124.66 SS G_CDS: -5.36 Total: -130.02 kcal Atomic # 8 Polarization: -25.05 SS G_CDS: -1.66 Total: -26.71 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -77.48 1.10 -76.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034690084.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.031 kcal (2) G-P(sol) polarization free energy of solvation -77.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds