Wall clock time and date at job start Tue Mar 31 2020 21:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.52495 * 2 1 4 4 C 1.53195 * 109.49340 * 239.92141 * 2 1 3 5 5 N 1.46928 * 108.77505 * 185.41193 * 4 2 1 6 6 C 1.34783 * 120.63104 * 233.63472 * 5 4 2 7 7 O 1.21538 * 120.00101 * 354.84461 * 6 5 4 8 8 C 1.48002 * 119.99884 * 174.84356 * 6 5 4 9 9 N 1.34193 * 126.69921 * 353.03778 * 8 6 5 10 10 N 1.28983 * 107.25092 * 179.89192 * 9 8 6 11 11 N 1.28722 * 108.98717 * 0.37052 * 10 9 8 12 12 C 1.46498 * 125.31875 * 179.79647 * 11 10 9 13 13 C 1.53008 * 109.47095 * 239.96118 * 12 11 10 14 14 C 1.52998 * 109.47308 * 359.96223 * 12 11 10 15 15 C 1.52995 * 109.47295 * 119.96253 * 12 11 10 16 16 N 1.28863 * 109.36010 * 359.76555 * 11 10 9 17 17 C 1.46927 * 118.74019 * 53.60777 * 5 4 2 18 18 C 1.53191 * 108.77374 * 306.39345 * 17 5 4 19 19 C 1.53035 * 109.50159 * 120.08638 * 2 1 3 20 20 H 1.08995 * 109.44999 * 61.29695 * 19 2 1 21 21 N 1.46508 * 109.45596 * 301.33670 * 19 2 1 22 22 C 1.36936 * 119.99555 * 154.93097 * 21 19 2 23 23 H 1.07995 * 120.00657 * 0.02562 * 22 21 19 24 24 C 1.38817 * 119.99410 * 179.97438 * 22 21 19 25 25 N 1.31609 * 120.00221 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99580 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46949 * 269.99878 * 26 24 22 28 28 H 1.48500 * 109.47356 * 29.99960 * 26 24 22 29 29 H 1.48501 * 109.47083 * 150.00251 * 26 24 22 30 30 H 1.08999 * 109.46655 * 299.91278 * 1 2 3 31 31 H 1.08994 * 109.47046 * 59.91997 * 1 2 3 32 32 H 1.09000 * 109.46570 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.58507 * 65.62972 * 4 2 1 34 34 H 1.08996 * 109.70895 * 305.26984 * 4 2 1 35 35 H 1.09000 * 109.46708 * 60.00532 * 13 12 11 36 36 H 1.09001 * 109.46763 * 180.02562 * 13 12 11 37 37 H 1.08997 * 109.46671 * 299.99753 * 13 12 11 38 38 H 1.08997 * 109.47327 * 59.99680 * 14 12 11 39 39 H 1.08996 * 109.47567 * 180.02562 * 14 12 11 40 40 H 1.09009 * 109.47126 * 299.99760 * 14 12 11 41 41 H 1.09004 * 109.47502 * 60.00009 * 15 12 11 42 42 H 1.09001 * 109.47510 * 180.02562 * 15 12 11 43 43 H 1.09003 * 109.47222 * 300.00272 * 15 12 11 44 44 H 1.08993 * 109.58760 * 186.61104 * 17 5 4 45 45 H 1.08994 * 109.70276 * 66.24734 * 17 5 4 46 46 H 1.09003 * 109.50283 * 294.68099 * 18 17 5 47 47 H 1.09003 * 109.52586 * 174.60045 * 18 17 5 48 48 H 0.96999 * 119.99809 * 334.93272 * 21 19 2 49 49 H 0.97004 * 120.00043 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2497 5 7 3.5046 -0.8291 -1.1698 6 6 4.2811 -0.3855 -2.1781 7 8 3.7716 0.0209 -3.2040 8 6 5.7543 -0.3931 -2.0361 9 7 6.4516 -0.6859 -0.9276 10 7 7.7025 -0.5792 -1.2233 11 7 7.8129 -0.2277 -2.4567 12 6 9.0761 -0.0001 -3.1627 13 6 9.1242 1.4427 -3.6699 14 6 10.2457 -0.2439 -2.2070 15 6 9.1779 -0.9611 -4.3488 16 7 6.6385 -0.1079 -2.9734 17 6 4.1054 -1.4267 0.0305 18 6 3.5710 -0.6951 1.2658 19 6 2.0409 -0.7232 1.2482 20 1 1.6968 -1.7573 1.2349 21 7 1.5266 -0.0531 2.4452 22 6 1.3953 -0.7498 3.6167 23 1 1.6711 -1.7931 3.6585 24 6 0.9085 -0.1147 4.7511 25 7 0.5737 1.1571 4.7007 26 14 0.7299 -1.0650 6.3493 27 1 -0.6222 -1.6755 6.4138 28 1 1.7591 -2.1339 6.4073 29 1 0.9109 -0.1408 7.4975 30 1 -0.3632 0.5125 0.8908 31 1 -0.3633 0.5151 -0.8892 32 1 -0.3632 -1.0277 -0.0005 33 1 1.7637 -0.1578 -2.1389 34 1 1.6054 -1.7215 -1.3007 35 1 9.0518 2.1274 -2.8248 36 1 10.0639 1.6119 -4.1956 37 1 8.2910 1.6164 -4.3508 38 1 10.2115 -1.2717 -1.8457 39 1 11.1856 -0.0741 -2.7321 40 1 10.1733 0.4409 -1.3619 41 1 8.3447 -0.7874 -5.0298 42 1 10.1180 -0.7921 -4.8739 43 1 9.1436 -1.9890 -3.9875 44 1 5.1896 -1.3245 -0.0140 45 1 3.8398 -2.4823 0.0877 46 1 3.9160 0.3388 1.2540 47 1 3.9336 -1.1893 2.1672 48 1 1.2792 0.8841 2.4079 49 1 0.2332 1.6008 5.4932 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036041771.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:16 Heat of formation + Delta-G solvation = 115.287227 kcal Electronic energy + Delta-G solvation = -30007.581739 eV Core-core repulsion = 26008.827169 eV Total energy + Delta-G solvation = -3998.754570 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -44.63240 -40.06714 -38.06681 -37.62541 -34.73800 -33.69686 -33.12928 -32.30001 -31.39704 -29.29332 -28.20702 -28.13189 -27.06233 -25.39850 -24.83949 -24.19419 -22.65444 -21.60318 -21.05733 -20.31825 -19.24371 -17.65604 -17.50629 -17.03405 -16.89998 -16.17910 -15.20614 -14.96315 -14.81611 -14.67955 -14.48427 -14.19875 -13.78823 -13.60456 -13.48530 -13.23991 -13.12741 -12.97613 -12.86179 -12.52962 -12.42186 -12.40970 -12.17197 -12.07396 -11.89889 -11.60108 -11.52410 -11.20048 -11.15672 -10.99197 -10.85507 -10.73247 -10.55587 -10.48382 -10.33373 -10.15760 -10.02291 -9.65242 -9.56785 -8.83329 -8.51854 -6.90849 -5.73246 -3.01307 0.85608 1.31779 1.42159 2.69651 3.05168 3.45587 3.51052 3.52477 3.64085 3.82240 3.94232 4.04912 4.34222 4.61639 4.76287 4.85018 4.86757 4.94363 5.02781 5.07190 5.09021 5.21120 5.26699 5.29940 5.40420 5.43474 5.51071 5.51450 5.59592 5.63421 5.73600 5.81490 5.88377 5.90281 6.10712 6.11491 6.31803 6.41077 6.47070 6.49104 6.59355 6.72389 6.89113 6.97001 7.14583 7.35531 7.73447 7.89056 8.13479 8.45160 9.56567 10.14550 10.49560 11.49422 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.017254 B = 0.002658 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.387416 B =10531.904736 C =11605.323416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.110 4.110 3 H 0.070 0.930 4 C 0.122 3.878 5 N -0.580 5.580 6 C 0.612 3.388 7 O -0.521 6.521 8 C 0.137 3.863 9 N -0.251 5.251 10 N -0.057 5.057 11 N -0.125 5.125 12 C 0.176 3.824 13 C -0.161 4.161 14 C -0.154 4.154 15 C -0.160 4.160 16 N -0.248 5.248 17 C 0.069 3.931 18 C -0.144 4.144 19 C 0.182 3.818 20 H 0.048 0.952 21 N -0.721 5.721 22 C -0.235 4.235 23 H 0.070 0.930 24 C -0.014 4.014 25 N -0.933 5.933 26 Si 0.904 3.096 27 H -0.291 1.291 28 H -0.282 1.282 29 H -0.293 1.293 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.051 0.949 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.092 0.908 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.077 0.923 41 H 0.079 0.921 42 H 0.092 0.908 43 H 0.068 0.932 44 H 0.130 0.870 45 H 0.066 0.934 46 H 0.058 0.942 47 H 0.077 0.923 48 H 0.384 0.616 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.975 -3.424 -19.343 27.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.130 4.130 3 H 0.089 0.911 4 C 0.000 4.000 5 N -0.312 5.312 6 C 0.394 3.606 7 O -0.394 6.394 8 C -0.147 4.147 9 N -0.124 5.124 10 N -0.049 5.049 11 N -0.040 5.040 12 C 0.096 3.904 13 C -0.219 4.219 14 C -0.212 4.212 15 C -0.218 4.218 16 N -0.101 5.101 17 C -0.055 4.055 18 C -0.186 4.186 19 C 0.071 3.929 20 H 0.066 0.934 21 N -0.361 5.361 22 C -0.366 4.366 23 H 0.088 0.912 24 C -0.210 4.210 25 N -0.582 5.582 26 Si 0.736 3.264 27 H -0.218 1.218 28 H -0.208 1.208 29 H -0.219 1.219 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.070 0.930 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.096 0.904 41 H 0.098 0.902 42 H 0.110 0.890 43 H 0.087 0.913 44 H 0.147 0.853 45 H 0.084 0.916 46 H 0.077 0.923 47 H 0.095 0.905 48 H 0.217 0.783 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 19.265 -3.382 -19.474 27.601 hybrid contribution -0.563 -0.111 0.940 1.101 sum 18.702 -3.494 -18.534 26.561 Atomic orbital electron populations 1.21657 0.93906 1.01843 1.01922 1.21759 0.96659 1.00098 0.94525 0.91126 1.21857 0.77028 1.01416 0.99691 1.47928 1.07164 1.58233 1.17826 1.16200 0.81354 0.79071 0.83995 1.90814 1.72791 1.47701 1.28093 1.25350 0.97840 1.04559 0.86984 1.75858 0.95891 1.17916 1.22783 1.78942 1.14357 1.13366 0.98235 1.50723 1.07046 1.39442 1.06744 1.21526 0.76961 0.98913 0.93033 1.22268 1.04792 0.92020 1.02847 1.22115 0.95268 1.04612 0.99182 1.22259 1.04720 0.98640 0.96222 1.74968 0.90586 1.18809 1.25709 1.22885 1.02063 0.96788 0.83726 1.22595 0.99616 1.00446 0.95905 1.20249 0.90708 0.95628 0.86271 0.93360 1.42404 1.76523 1.11362 1.05791 1.19223 1.35583 0.94068 0.87714 0.91214 1.24718 1.02261 0.96001 0.98006 1.69657 1.50217 1.09436 1.28858 0.86227 0.77742 0.78689 0.83764 1.21835 1.20794 1.21907 0.90649 0.93773 0.92969 0.89136 0.90873 0.91177 0.88953 0.90203 0.90428 0.89090 0.90379 0.90227 0.88960 0.91262 0.85340 0.91590 0.92301 0.90462 0.78255 0.93593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.03 37.16 0.34 -1.87 16 2 C -0.11 -1.86 2.46 -90.50 -0.22 -2.08 16 3 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 4 C 0.12 1.82 5.70 -3.71 -0.02 1.80 16 5 N -0.58 -9.03 2.97 -173.82 -0.52 -9.55 16 6 C 0.61 10.13 7.71 -12.25 -0.09 10.03 16 7 O -0.52 -9.65 16.53 5.33 0.09 -9.56 16 8 C 0.14 2.10 7.86 -156.24 -1.23 0.87 16 9 N -0.25 -3.71 8.96 32.10 0.29 -3.43 16 10 N -0.06 -0.74 12.21 60.35 0.74 0.00 16 11 N -0.12 -1.40 3.72 0.52 0.00 -1.39 16 12 C 0.18 1.16 1.30 -131.82 -0.17 0.99 16 13 C -0.16 -0.87 8.66 37.16 0.32 -0.55 16 14 C -0.15 -0.73 7.90 37.16 0.29 -0.43 16 15 C -0.16 -0.80 8.66 37.15 0.32 -0.48 16 16 N -0.25 -3.43 11.85 32.11 0.38 -3.05 16 17 C 0.07 1.05 6.33 -3.71 -0.02 1.02 16 18 C -0.14 -2.60 5.66 -26.61 -0.15 -2.75 16 19 C 0.18 3.53 2.19 -67.89 -0.15 3.38 16 20 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 21 N -0.72 -17.55 4.41 -53.38 -0.24 -17.79 16 22 C -0.23 -6.36 9.93 -15.06 -0.15 -6.51 16 23 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 24 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 25 N -0.93 -28.01 13.06 55.49 0.72 -27.28 16 26 Si 0.90 22.32 29.55 -169.99 -5.02 17.30 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 28 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 29 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 30 H 0.07 1.44 7.36 -51.93 -0.38 1.06 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.09 1.35 7.04 -51.93 -0.37 0.99 16 34 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 40 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 41 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.09 0.20 8.14 -51.93 -0.42 -0.23 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 44 H 0.13 1.95 3.71 -109.14 -0.41 1.55 16 45 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 47 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 48 H 0.38 10.07 7.51 -40.82 -0.31 9.77 16 49 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 393.57 15.07 5.93 5.93 Total: -1.00 -32.95 393.57 -6.85 -39.80 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -8.19 Total: 6.10 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: -1.03 Total: 2.92 kcal Atomic # 7 Polarization: -63.87 SS G_CDS: 1.38 Total: -62.49 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.95 -6.85 -39.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036041771.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.085 kcal (2) G-P(sol) polarization free energy of solvation -32.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds