Wall clock time and date at job start Tue Mar 31 2020 21:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.52495 * 2 1 4 4 C 1.53195 * 109.49340 * 239.92141 * 2 1 3 5 5 N 1.46928 * 108.77505 * 185.41193 * 4 2 1 6 6 C 1.34783 * 120.63104 * 233.63472 * 5 4 2 7 7 O 1.21538 * 120.00101 * 354.84461 * 6 5 4 8 8 C 1.48002 * 119.99884 * 174.84356 * 6 5 4 9 9 N 1.34193 * 126.69921 * 353.03778 * 8 6 5 10 10 N 1.28983 * 107.25092 * 179.89192 * 9 8 6 11 11 N 1.28722 * 108.98717 * 0.37052 * 10 9 8 12 12 C 1.46498 * 125.31875 * 179.79647 * 11 10 9 13 13 C 1.53008 * 109.47095 * 239.96118 * 12 11 10 14 14 C 1.52998 * 109.47308 * 359.96223 * 12 11 10 15 15 C 1.52995 * 109.47295 * 119.96253 * 12 11 10 16 16 N 1.28863 * 109.36010 * 359.76555 * 11 10 9 17 17 C 1.46927 * 118.74019 * 53.60777 * 5 4 2 18 18 C 1.53191 * 108.77374 * 306.39345 * 17 5 4 19 19 C 1.53035 * 109.50159 * 120.08638 * 2 1 3 20 20 H 1.08995 * 109.44999 * 61.29695 * 19 2 1 21 21 N 1.46508 * 109.45596 * 301.33670 * 19 2 1 22 22 C 1.36936 * 119.99555 * 154.93097 * 21 19 2 23 23 H 1.07995 * 120.00657 * 0.02562 * 22 21 19 24 24 C 1.38817 * 119.99410 * 179.97438 * 22 21 19 25 25 N 1.31609 * 120.00221 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99580 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.46949 * 269.99878 * 26 24 22 28 28 H 1.48500 * 109.47356 * 29.99960 * 26 24 22 29 29 H 1.48501 * 109.47083 * 150.00251 * 26 24 22 30 30 H 1.08999 * 109.46655 * 299.91278 * 1 2 3 31 31 H 1.08994 * 109.47046 * 59.91997 * 1 2 3 32 32 H 1.09000 * 109.46570 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.58507 * 65.62972 * 4 2 1 34 34 H 1.08996 * 109.70895 * 305.26984 * 4 2 1 35 35 H 1.09000 * 109.46708 * 60.00532 * 13 12 11 36 36 H 1.09001 * 109.46763 * 180.02562 * 13 12 11 37 37 H 1.08997 * 109.46671 * 299.99753 * 13 12 11 38 38 H 1.08997 * 109.47327 * 59.99680 * 14 12 11 39 39 H 1.08996 * 109.47567 * 180.02562 * 14 12 11 40 40 H 1.09009 * 109.47126 * 299.99760 * 14 12 11 41 41 H 1.09004 * 109.47502 * 60.00009 * 15 12 11 42 42 H 1.09001 * 109.47510 * 180.02562 * 15 12 11 43 43 H 1.09003 * 109.47222 * 300.00272 * 15 12 11 44 44 H 1.08993 * 109.58760 * 186.61104 * 17 5 4 45 45 H 1.08994 * 109.70276 * 66.24734 * 17 5 4 46 46 H 1.09003 * 109.50283 * 294.68099 * 18 17 5 47 47 H 1.09003 * 109.52586 * 174.60045 * 18 17 5 48 48 H 0.96999 * 119.99809 * 334.93272 * 21 19 2 49 49 H 0.97004 * 120.00043 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2497 5 7 3.5046 -0.8291 -1.1698 6 6 4.2811 -0.3855 -2.1781 7 8 3.7716 0.0209 -3.2040 8 6 5.7543 -0.3931 -2.0361 9 7 6.4516 -0.6859 -0.9276 10 7 7.7025 -0.5792 -1.2233 11 7 7.8129 -0.2277 -2.4567 12 6 9.0761 -0.0001 -3.1627 13 6 9.1242 1.4427 -3.6699 14 6 10.2457 -0.2439 -2.2070 15 6 9.1779 -0.9611 -4.3488 16 7 6.6385 -0.1079 -2.9734 17 6 4.1054 -1.4267 0.0305 18 6 3.5710 -0.6951 1.2658 19 6 2.0409 -0.7232 1.2482 20 1 1.6968 -1.7573 1.2349 21 7 1.5266 -0.0531 2.4452 22 6 1.3953 -0.7498 3.6167 23 1 1.6711 -1.7931 3.6585 24 6 0.9085 -0.1147 4.7511 25 7 0.5737 1.1571 4.7007 26 14 0.7299 -1.0650 6.3493 27 1 -0.6222 -1.6755 6.4138 28 1 1.7591 -2.1339 6.4073 29 1 0.9109 -0.1408 7.4975 30 1 -0.3632 0.5125 0.8908 31 1 -0.3633 0.5151 -0.8892 32 1 -0.3632 -1.0277 -0.0005 33 1 1.7637 -0.1578 -2.1389 34 1 1.6054 -1.7215 -1.3007 35 1 9.0518 2.1274 -2.8248 36 1 10.0639 1.6119 -4.1956 37 1 8.2910 1.6164 -4.3508 38 1 10.2115 -1.2717 -1.8457 39 1 11.1856 -0.0741 -2.7321 40 1 10.1733 0.4409 -1.3619 41 1 8.3447 -0.7874 -5.0298 42 1 10.1180 -0.7921 -4.8739 43 1 9.1436 -1.9890 -3.9875 44 1 5.1896 -1.3245 -0.0140 45 1 3.8398 -2.4823 0.0877 46 1 3.9160 0.3388 1.2540 47 1 3.9336 -1.1893 2.1672 48 1 1.2792 0.8841 2.4079 49 1 0.2332 1.6008 5.4932 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036041771.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:15 Heat of formation + Delta-G solvation = 93.755643 kcal Electronic energy + Delta-G solvation = -30008.515418 eV Core-core repulsion = 26008.827169 eV Total energy + Delta-G solvation = -3999.688250 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -45.65078 -41.37434 -39.14244 -38.63575 -36.31620 -34.82208 -34.53785 -33.51453 -32.97332 -31.07514 -28.75362 -28.53399 -28.17400 -26.96662 -25.78511 -25.65488 -24.21191 -23.08429 -21.95192 -21.55220 -20.62916 -19.05215 -18.67150 -18.45968 -17.81517 -17.46261 -16.75731 -16.39727 -15.83300 -15.73685 -15.44467 -15.31819 -15.16343 -15.12939 -14.82881 -14.30278 -14.11712 -14.00620 -13.61613 -13.49963 -13.43734 -13.24086 -13.09021 -12.94952 -12.84985 -12.84532 -12.75943 -12.64804 -12.48827 -12.28625 -12.13768 -12.12947 -12.12399 -11.85132 -11.79163 -11.67127 -11.50940 -11.31510 -11.14191 -10.76148 -9.83523 -8.93677 -7.88895 -5.16127 -0.19035 0.19360 0.62885 1.49805 1.50733 1.54284 1.58914 1.80862 2.59400 2.63317 2.88910 3.44611 3.47169 3.48620 3.62123 3.72158 3.79062 3.89778 4.03146 4.11824 4.22044 4.36984 4.40654 4.42524 4.49239 4.52860 4.56406 4.60807 4.72729 4.72953 4.73692 4.76812 4.82997 4.93863 5.01995 5.03127 5.10548 5.11307 5.17128 5.20066 5.25032 5.33952 5.44805 5.50497 5.57665 5.64702 6.06877 6.32654 6.66134 7.03568 7.39163 8.15189 8.38809 9.34804 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.017254 B = 0.002658 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1622.387416 B =10531.904736 C =11605.323416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.101 4.101 3 H 0.054 0.946 4 C 0.127 3.873 5 N -0.579 5.579 6 C 0.613 3.387 7 O -0.545 6.545 8 C 0.119 3.881 9 N -0.267 5.267 10 N -0.059 5.059 11 N -0.106 5.106 12 C 0.158 3.842 13 C -0.158 4.158 14 C -0.151 4.151 15 C -0.156 4.156 16 N -0.255 5.255 17 C 0.079 3.921 18 C -0.133 4.133 19 C 0.178 3.822 20 H 0.053 0.947 21 N -0.731 5.731 22 C -0.228 4.228 23 H 0.078 0.922 24 C -0.078 4.078 25 N -0.972 5.972 26 Si 0.967 3.033 27 H -0.289 1.289 28 H -0.269 1.269 29 H -0.301 1.301 30 H 0.041 0.959 31 H 0.068 0.932 32 H 0.061 0.939 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.058 0.942 36 H 0.130 0.870 37 H 0.064 0.936 38 H 0.071 0.929 39 H 0.128 0.872 40 H 0.066 0.934 41 H 0.064 0.936 42 H 0.130 0.870 43 H 0.063 0.937 44 H 0.135 0.865 45 H 0.086 0.914 46 H 0.039 0.961 47 H 0.065 0.935 48 H 0.371 0.629 49 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.004 -4.911 -20.887 30.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.121 4.121 3 H 0.072 0.928 4 C 0.006 3.994 5 N -0.310 5.310 6 C 0.396 3.604 7 O -0.420 6.420 8 C -0.165 4.165 9 N -0.140 5.140 10 N -0.051 5.051 11 N -0.023 5.023 12 C 0.080 3.920 13 C -0.217 4.217 14 C -0.209 4.209 15 C -0.214 4.214 16 N -0.108 5.108 17 C -0.044 4.044 18 C -0.174 4.174 19 C 0.070 3.930 20 H 0.071 0.929 21 N -0.369 5.369 22 C -0.360 4.360 23 H 0.096 0.904 24 C -0.270 4.270 25 N -0.623 5.623 26 Si 0.797 3.203 27 H -0.216 1.216 28 H -0.194 1.194 29 H -0.228 1.228 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.080 0.920 33 H 0.113 0.887 34 H 0.115 0.885 35 H 0.077 0.923 36 H 0.149 0.851 37 H 0.083 0.917 38 H 0.090 0.910 39 H 0.146 0.854 40 H 0.086 0.914 41 H 0.083 0.917 42 H 0.148 0.852 43 H 0.082 0.918 44 H 0.152 0.848 45 H 0.105 0.895 46 H 0.058 0.942 47 H 0.084 0.916 48 H 0.202 0.798 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 21.326 -4.917 -21.037 30.357 hybrid contribution -1.038 0.372 1.293 1.699 sum 20.288 -4.545 -19.745 28.672 Atomic orbital electron populations 1.21568 0.93303 1.02318 1.01433 1.21626 0.97087 0.99098 0.94283 0.92790 1.21853 0.76747 1.02441 0.98396 1.47952 1.07414 1.57925 1.17667 1.16317 0.81916 0.78443 0.83734 1.90790 1.73443 1.48779 1.29001 1.25148 0.97566 1.06105 0.87661 1.75758 0.96534 1.18717 1.23035 1.78866 1.13514 1.13624 0.99057 1.51328 1.07591 1.37146 1.06256 1.22253 0.75599 1.00225 0.93918 1.22320 1.06235 0.90746 1.02353 1.22187 0.95892 1.03933 0.98858 1.22306 1.06118 0.97758 0.95259 1.74934 0.91328 1.18812 1.25758 1.22815 1.02337 0.97225 0.82061 1.22387 0.98393 0.99622 0.97043 1.20466 0.91377 0.95580 0.85608 0.92937 1.42580 1.76780 1.10837 1.06737 1.19602 1.33494 0.94388 0.88504 0.90444 1.25485 1.03329 0.96910 1.01265 1.69819 1.52191 1.11063 1.29230 0.85216 0.77852 0.77481 0.79708 1.21619 1.19370 1.22774 0.94003 0.91339 0.91973 0.88704 0.88549 0.92261 0.85131 0.91707 0.91008 0.85378 0.91447 0.91665 0.85217 0.91793 0.84837 0.89541 0.94203 0.91589 0.79776 0.94325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.11 9.03 71.98 0.65 -3.46 16 2 C -0.10 -3.36 2.46 -10.71 -0.03 -3.38 16 3 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 4 C 0.13 3.61 5.70 86.36 0.49 4.10 16 5 N -0.58 -17.46 2.97 -822.13 -2.44 -19.90 16 6 C 0.61 20.01 7.71 86.83 0.67 20.68 16 7 O -0.54 -20.00 16.53 -3.83 -0.06 -20.07 16 8 C 0.12 3.61 7.86 137.15 1.08 4.69 16 9 N -0.27 -7.82 8.96 -52.36 -0.47 -8.29 16 10 N -0.06 -1.49 12.21 37.02 0.45 -1.04 16 11 N -0.11 -2.28 3.72 -152.26 -0.57 -2.85 16 12 C 0.16 1.76 1.30 3.60 0.00 1.77 16 13 C -0.16 -1.38 8.66 71.98 0.62 -0.76 16 14 C -0.15 -1.04 7.90 71.98 0.57 -0.47 16 15 C -0.16 -1.17 8.66 71.98 0.62 -0.55 16 16 N -0.25 -6.92 11.85 -52.31 -0.62 -7.54 16 17 C 0.08 2.32 6.33 86.36 0.55 2.86 16 18 C -0.13 -4.81 5.66 30.67 0.17 -4.63 16 19 C 0.18 6.88 2.19 45.02 0.10 6.98 16 20 H 0.05 2.01 8.08 -2.39 -0.02 1.99 16 21 N -0.73 -36.21 4.41 -322.81 -1.42 -37.63 16 22 C -0.23 -12.41 9.93 84.03 0.83 -11.57 16 23 H 0.08 4.03 7.83 -2.91 -0.02 4.00 16 24 C -0.08 -4.47 5.50 84.86 0.47 -4.00 16 25 N -0.97 -59.85 13.06 21.65 0.28 -59.57 16 26 Si 0.97 46.30 29.55 68.60 2.03 48.32 16 27 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 28 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 29 H -0.30 -14.67 7.11 99.48 0.71 -13.97 16 30 H 0.04 1.62 7.36 -2.39 -0.02 1.60 16 31 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.09 2.68 7.04 -2.39 -0.02 2.66 16 34 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 35 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.13 0.13 8.14 -2.39 -0.02 0.11 16 37 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.13 -0.05 8.14 -2.39 -0.02 -0.07 16 40 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 41 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.13 0.01 8.14 -2.39 -0.02 -0.01 16 43 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.13 3.96 3.71 -76.36 -0.28 3.68 16 45 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 46 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 48 H 0.37 20.16 7.51 -92.71 -0.70 19.46 16 49 H 0.25 14.92 8.31 -92.71 -0.77 14.15 16 Total: -1.00 -72.95 393.57 3.96 -68.98 By element: Atomic # 1 Polarization: 27.35 SS G_CDS: -0.02 Total: 27.33 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 6.80 Total: 12.25 kcal Atomic # 7 Polarization: -132.03 SS G_CDS: -4.79 Total: -136.82 kcal Atomic # 8 Polarization: -20.00 SS G_CDS: -0.06 Total: -20.07 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.32 kcal Total: -72.95 3.96 -68.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036041771.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.739 kcal (2) G-P(sol) polarization free energy of solvation -72.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds