Wall clock time and date at job start Tue Mar 31 2020 21:20:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.51727 * 2 1 4 4 C 1.53184 * 109.49998 * 239.92143 * 2 1 3 5 5 N 1.46918 * 108.77892 * 185.40824 * 4 2 1 6 6 C 1.34774 * 120.63374 * 233.58826 * 5 4 2 7 7 O 1.21536 * 120.00185 * 354.87605 * 6 5 4 8 8 C 1.48007 * 119.99973 * 174.88209 * 6 5 4 9 9 N 1.34187 * 126.69882 * 353.03637 * 8 6 5 10 10 N 1.28980 * 107.25370 * 179.84295 * 9 8 6 11 11 N 1.28726 * 108.98613 * 0.43026 * 10 9 8 12 12 C 1.46500 * 125.32064 * 179.76529 * 11 10 9 13 13 C 1.52996 * 109.47194 * 239.95832 * 12 11 10 14 14 C 1.53001 * 109.47022 * 359.95587 * 12 11 10 15 15 C 1.53000 * 109.47225 * 119.95875 * 12 11 10 16 16 N 1.28863 * 109.35879 * 359.72484 * 11 10 9 17 17 C 1.46932 * 118.73721 * 53.61091 * 5 4 2 18 18 C 1.53194 * 108.77241 * 306.39083 * 17 5 4 19 19 C 1.53041 * 109.31306 * 54.63623 * 18 17 5 20 20 H 1.09003 * 109.46147 * 178.61778 * 19 18 17 21 21 N 1.46496 * 109.46030 * 58.65447 * 19 18 17 22 22 C 1.36932 * 120.00117 * 85.00553 * 21 19 18 23 23 H 1.08002 * 119.99964 * 359.97438 * 22 21 19 24 24 C 1.38811 * 120.00245 * 180.02562 * 22 21 19 25 25 N 1.31628 * 119.99899 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 120.00185 * 179.97438 * 24 22 21 27 27 H 1.48491 * 109.47041 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.46807 * 119.99651 * 26 24 22 29 29 H 1.48500 * 109.46715 * 239.99527 * 26 24 22 30 30 H 1.09004 * 109.46821 * 180.08527 * 1 2 3 31 31 H 1.08999 * 109.47120 * 300.07762 * 1 2 3 32 32 H 1.08997 * 109.47514 * 60.08036 * 1 2 3 33 33 H 1.09003 * 109.58895 * 65.62097 * 4 2 1 34 34 H 1.09008 * 109.58804 * 305.20035 * 4 2 1 35 35 H 1.09007 * 109.47250 * 59.99650 * 13 12 11 36 36 H 1.09003 * 109.47463 * 179.97438 * 13 12 11 37 37 H 1.09001 * 109.47331 * 300.00199 * 13 12 11 38 38 H 1.09003 * 109.47133 * 60.00546 * 14 12 11 39 39 H 1.08997 * 109.47356 * 180.02562 * 14 12 11 40 40 H 1.08996 * 109.47697 * 300.00374 * 14 12 11 41 41 H 1.08989 * 109.47104 * 59.99839 * 15 12 11 42 42 H 1.08997 * 109.47048 * 180.02562 * 15 12 11 43 43 H 1.08999 * 109.46783 * 299.99624 * 15 12 11 44 44 H 1.09000 * 109.58371 * 66.17611 * 17 5 4 45 45 H 1.08999 * 109.58917 * 186.60427 * 17 5 4 46 46 H 1.08996 * 109.49948 * 174.58536 * 18 17 5 47 47 H 1.08997 * 109.49734 * 294.68492 * 18 17 5 48 48 H 0.97003 * 120.00165 * 264.99593 * 21 19 18 49 49 H 0.97001 * 119.99713 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0414 -0.7237 -1.2495 5 7 3.5046 -0.8289 -1.1696 6 6 4.2810 -0.3861 -2.1783 7 8 3.7715 0.0199 -3.2043 8 6 5.7543 -0.3944 -2.0366 9 7 6.4517 -0.6870 -0.9282 10 7 7.7026 -0.5821 -1.2244 11 7 7.8129 -0.2306 -2.4578 12 6 9.0761 -0.0041 -3.1643 13 6 9.1253 1.4386 -3.6714 14 6 10.2458 -0.2489 -2.2089 15 6 9.1766 -0.9653 -4.3505 16 7 6.6384 -0.1099 -2.9742 17 6 4.1054 -1.4265 0.0307 18 6 3.5709 -0.6949 1.2660 19 6 2.0408 -0.7231 1.2484 20 1 1.6581 -0.2244 2.1389 21 7 1.5785 -2.1130 1.2308 22 6 1.4469 -2.8057 2.4046 23 1 1.6844 -2.3275 3.3434 24 6 1.0093 -4.1230 2.3880 25 7 0.7203 -4.7060 1.2438 26 14 0.8305 -5.0681 3.9893 27 1 1.2160 -4.1937 5.1259 28 1 -0.5805 -5.5011 4.1536 29 1 1.7143 -6.2612 3.9611 30 1 -0.3633 -1.0277 0.0015 31 1 -0.3633 0.5150 0.8893 32 1 -0.3634 0.5126 -0.8907 33 1 1.7638 -0.1579 -2.1389 34 1 1.6053 -1.7216 -1.2980 35 1 9.0536 2.1234 -2.8264 36 1 10.0654 1.6073 -4.1967 37 1 8.2919 1.6131 -4.3521 38 1 10.2108 -1.2767 -1.8477 39 1 11.1857 -0.0800 -2.7344 40 1 10.1743 0.4358 -1.3639 41 1 8.3433 -0.7908 -5.0310 42 1 10.1167 -0.7970 -4.8758 43 1 9.1416 -1.9930 -3.9891 44 1 3.8376 -2.4817 0.0866 45 1 5.1896 -1.3244 -0.0138 46 1 3.9334 -1.1895 2.1670 47 1 3.9159 0.3390 1.2540 48 1 1.3654 -2.5427 0.3876 49 1 0.4141 -5.6264 1.2322 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036041772.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:21 Heat of formation + Delta-G solvation = 117.746819 kcal Electronic energy + Delta-G solvation = -30441.743101 eV Core-core repulsion = 26443.095187 eV Total energy + Delta-G solvation = -3998.647914 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.53241 -39.96586 -38.02523 -37.61858 -34.44663 -33.56208 -33.02866 -32.25699 -31.31980 -29.11369 -28.15663 -28.07829 -26.96487 -25.40885 -24.75026 -23.95273 -23.33247 -21.59360 -20.97440 -20.22793 -18.39140 -17.55366 -17.33778 -17.28446 -16.72979 -16.01460 -15.16031 -14.80490 -14.72670 -14.62400 -14.32086 -14.22074 -13.75799 -13.60913 -13.41726 -13.21279 -13.06543 -12.91297 -12.80591 -12.54109 -12.42049 -12.36755 -12.11852 -12.00263 -11.71715 -11.50967 -11.35784 -11.19374 -11.10941 -10.96155 -10.84300 -10.71389 -10.47373 -10.42457 -10.24038 -10.11417 -9.79242 -9.72212 -9.49247 -8.85461 -8.25169 -6.91551 -5.74206 -3.02003 0.95473 1.43445 1.50971 2.85631 3.20104 3.44999 3.51286 3.53017 3.71785 3.97860 4.00027 4.10705 4.44703 4.62054 4.84647 4.90554 4.91994 5.03556 5.08128 5.12551 5.13922 5.29119 5.35412 5.39347 5.45668 5.49332 5.56394 5.65228 5.69891 5.70532 5.88513 5.95368 5.97211 6.03258 6.11048 6.19629 6.32416 6.46817 6.53881 6.59555 6.70988 6.81749 6.85768 7.01203 7.06702 7.57082 7.74399 8.03613 8.26853 8.44468 9.56076 10.13247 10.48300 11.48433 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.016259 B = 0.002961 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.730737 B = 9452.873561 C =10399.161668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.066 0.934 4 C 0.121 3.879 5 N -0.574 5.574 6 C 0.609 3.391 7 O -0.525 6.525 8 C 0.139 3.861 9 N -0.250 5.250 10 N -0.060 5.060 11 N -0.126 5.126 12 C 0.176 3.824 13 C -0.160 4.160 14 C -0.153 4.153 15 C -0.161 4.161 16 N -0.249 5.249 17 C 0.077 3.923 18 C -0.143 4.143 19 C 0.176 3.824 20 H 0.051 0.949 21 N -0.719 5.719 22 C -0.233 4.233 23 H 0.070 0.930 24 C -0.014 4.014 25 N -0.933 5.933 26 Si 0.903 3.097 27 H -0.281 1.281 28 H -0.293 1.293 29 H -0.293 1.293 30 H 0.072 0.928 31 H 0.054 0.946 32 H 0.044 0.956 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.068 0.932 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.091 0.909 43 H 0.069 0.931 44 H 0.083 0.917 45 H 0.124 0.876 46 H 0.075 0.925 47 H 0.047 0.953 48 H 0.383 0.617 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.415 11.970 -10.068 24.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.085 0.915 4 C -0.001 4.001 5 N -0.305 5.305 6 C 0.390 3.610 7 O -0.399 6.399 8 C -0.145 4.145 9 N -0.123 5.123 10 N -0.052 5.052 11 N -0.041 5.041 12 C 0.096 3.904 13 C -0.218 4.218 14 C -0.211 4.211 15 C -0.219 4.219 16 N -0.102 5.102 17 C -0.046 4.046 18 C -0.184 4.184 19 C 0.066 3.934 20 H 0.069 0.931 21 N -0.361 5.361 22 C -0.364 4.364 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.582 5.582 26 Si 0.735 3.265 27 H -0.206 1.206 28 H -0.221 1.221 29 H -0.220 1.220 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.098 0.902 38 H 0.096 0.904 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.110 0.890 43 H 0.088 0.912 44 H 0.101 0.899 45 H 0.141 0.859 46 H 0.093 0.907 47 H 0.066 0.934 48 H 0.218 0.782 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 18.704 12.061 -10.172 24.470 hybrid contribution -0.568 -0.823 0.562 1.147 sum 18.136 11.238 -9.610 23.400 Atomic orbital electron populations 1.21665 0.94038 1.03281 1.00482 1.21720 0.96573 0.98886 0.95660 0.91511 1.21795 0.77232 1.02152 0.98931 1.47915 1.07112 1.57560 1.17910 1.16212 0.81306 0.79356 0.84118 1.90800 1.72758 1.48312 1.28077 1.25398 0.97911 1.04247 0.86899 1.75907 0.95802 1.17692 1.22931 1.78930 1.14517 1.13469 0.98264 1.50703 1.07021 1.39577 1.06797 1.21498 0.77033 0.98837 0.93035 1.22256 1.04743 0.92066 1.02770 1.22107 0.95264 1.04631 0.99129 1.22261 1.04665 0.98739 0.96242 1.74969 0.90559 1.19030 1.25635 1.22746 1.00790 0.98392 0.82661 1.22444 0.99716 0.98659 0.97589 1.20262 0.91158 0.87281 0.94682 0.93096 1.42476 1.78961 1.07755 1.06914 1.19264 1.36719 0.93837 0.86594 0.91188 1.24700 1.02489 0.97191 0.96558 1.69664 1.52001 1.12939 1.23560 0.86168 0.77193 0.80000 0.83133 1.20640 1.22064 1.22045 0.90948 0.92715 0.93732 0.89543 0.89977 0.91285 0.89018 0.90212 0.90399 0.89155 0.90465 0.90210 0.89020 0.91203 0.89862 0.85927 0.90656 0.93441 0.78150 0.93656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 9.06 37.16 0.34 -1.87 16 2 C -0.11 -1.82 2.67 -90.50 -0.24 -2.06 16 3 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 4 C 0.12 2.10 5.40 -3.72 -0.02 2.08 16 5 N -0.57 -10.19 2.97 -173.82 -0.52 -10.70 16 6 C 0.61 11.06 7.71 -12.26 -0.09 10.97 16 7 O -0.53 -10.53 16.53 5.33 0.09 -10.44 16 8 C 0.14 2.32 7.86 -156.24 -1.23 1.09 16 9 N -0.25 -3.98 8.96 32.10 0.29 -3.69 16 10 N -0.06 -0.83 12.21 60.35 0.74 -0.09 16 11 N -0.13 -1.52 3.72 0.52 0.00 -1.52 16 12 C 0.18 1.28 1.30 -131.82 -0.17 1.11 16 13 C -0.16 -0.92 8.66 37.16 0.32 -0.60 16 14 C -0.15 -0.81 7.90 37.16 0.29 -0.52 16 15 C -0.16 -0.96 8.66 37.16 0.32 -0.64 16 16 N -0.25 -3.70 11.85 32.11 0.38 -3.32 16 17 C 0.08 1.38 6.08 -3.71 -0.02 1.36 16 18 C -0.14 -2.55 5.78 -26.61 -0.15 -2.71 16 19 C 0.18 3.39 2.53 -67.89 -0.17 3.21 16 20 H 0.05 1.00 8.08 -51.93 -0.42 0.58 16 21 N -0.72 -16.83 3.64 -53.39 -0.19 -17.02 16 22 C -0.23 -6.16 9.93 -15.06 -0.15 -6.31 16 23 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 25 N -0.93 -27.45 13.06 55.49 0.72 -26.72 16 26 Si 0.90 22.11 29.55 -169.99 -5.02 17.09 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 28 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 29 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 30 H 0.07 1.35 7.53 -51.93 -0.39 0.96 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 1.46 7.04 -51.93 -0.37 1.09 16 34 H 0.08 1.56 6.64 -51.92 -0.34 1.21 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 40 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.08 0.58 8.14 -51.94 -0.42 0.16 16 42 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.08 1.72 7.74 -51.93 -0.40 1.32 16 45 H 0.12 2.13 3.71 -109.13 -0.41 1.72 16 46 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 47 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.38 9.59 5.93 -40.82 -0.24 9.35 16 49 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 389.63 15.07 5.87 5.87 Total: -1.00 -32.06 389.63 -6.75 -38.82 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -8.03 Total: 7.08 kcal Atomic # 6 Polarization: 5.72 SS G_CDS: -1.08 Total: 4.65 kcal Atomic # 7 Polarization: -64.48 SS G_CDS: 1.42 Total: -63.06 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.06 -6.75 -38.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036041772.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.562 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 124.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds