Wall clock time and date at job start Tue Mar 31 2020 21:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09005 * 109.51727 * 2 1 4 4 C 1.53184 * 109.49998 * 239.92143 * 2 1 3 5 5 N 1.46918 * 108.77892 * 185.40824 * 4 2 1 6 6 C 1.34774 * 120.63374 * 233.58826 * 5 4 2 7 7 O 1.21536 * 120.00185 * 354.87605 * 6 5 4 8 8 C 1.48007 * 119.99973 * 174.88209 * 6 5 4 9 9 N 1.34187 * 126.69882 * 353.03637 * 8 6 5 10 10 N 1.28980 * 107.25370 * 179.84295 * 9 8 6 11 11 N 1.28726 * 108.98613 * 0.43026 * 10 9 8 12 12 C 1.46500 * 125.32064 * 179.76529 * 11 10 9 13 13 C 1.52996 * 109.47194 * 239.95832 * 12 11 10 14 14 C 1.53001 * 109.47022 * 359.95587 * 12 11 10 15 15 C 1.53000 * 109.47225 * 119.95875 * 12 11 10 16 16 N 1.28863 * 109.35879 * 359.72484 * 11 10 9 17 17 C 1.46932 * 118.73721 * 53.61091 * 5 4 2 18 18 C 1.53194 * 108.77241 * 306.39083 * 17 5 4 19 19 C 1.53041 * 109.31306 * 54.63623 * 18 17 5 20 20 H 1.09003 * 109.46147 * 178.61778 * 19 18 17 21 21 N 1.46496 * 109.46030 * 58.65447 * 19 18 17 22 22 C 1.36932 * 120.00117 * 85.00553 * 21 19 18 23 23 H 1.08002 * 119.99964 * 359.97438 * 22 21 19 24 24 C 1.38811 * 120.00245 * 180.02562 * 22 21 19 25 25 N 1.31628 * 119.99899 * 359.97438 * 24 22 21 26 26 Si 1.86805 * 120.00185 * 179.97438 * 24 22 21 27 27 H 1.48491 * 109.47041 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.46807 * 119.99651 * 26 24 22 29 29 H 1.48500 * 109.46715 * 239.99527 * 26 24 22 30 30 H 1.09004 * 109.46821 * 180.08527 * 1 2 3 31 31 H 1.08999 * 109.47120 * 300.07762 * 1 2 3 32 32 H 1.08997 * 109.47514 * 60.08036 * 1 2 3 33 33 H 1.09003 * 109.58895 * 65.62097 * 4 2 1 34 34 H 1.09008 * 109.58804 * 305.20035 * 4 2 1 35 35 H 1.09007 * 109.47250 * 59.99650 * 13 12 11 36 36 H 1.09003 * 109.47463 * 179.97438 * 13 12 11 37 37 H 1.09001 * 109.47331 * 300.00199 * 13 12 11 38 38 H 1.09003 * 109.47133 * 60.00546 * 14 12 11 39 39 H 1.08997 * 109.47356 * 180.02562 * 14 12 11 40 40 H 1.08996 * 109.47697 * 300.00374 * 14 12 11 41 41 H 1.08989 * 109.47104 * 59.99839 * 15 12 11 42 42 H 1.08997 * 109.47048 * 180.02562 * 15 12 11 43 43 H 1.08999 * 109.46783 * 299.99624 * 15 12 11 44 44 H 1.09000 * 109.58371 * 66.17611 * 17 5 4 45 45 H 1.08999 * 109.58917 * 186.60427 * 17 5 4 46 46 H 1.08996 * 109.49948 * 174.58536 * 18 17 5 47 47 H 1.08997 * 109.49734 * 294.68492 * 18 17 5 48 48 H 0.97003 * 120.00165 * 264.99593 * 21 19 18 49 49 H 0.97001 * 119.99713 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0414 -0.7237 -1.2495 5 7 3.5046 -0.8289 -1.1696 6 6 4.2810 -0.3861 -2.1783 7 8 3.7715 0.0199 -3.2043 8 6 5.7543 -0.3944 -2.0366 9 7 6.4517 -0.6870 -0.9282 10 7 7.7026 -0.5821 -1.2244 11 7 7.8129 -0.2306 -2.4578 12 6 9.0761 -0.0041 -3.1643 13 6 9.1253 1.4386 -3.6714 14 6 10.2458 -0.2489 -2.2089 15 6 9.1766 -0.9653 -4.3505 16 7 6.6384 -0.1099 -2.9742 17 6 4.1054 -1.4265 0.0307 18 6 3.5709 -0.6949 1.2660 19 6 2.0408 -0.7231 1.2484 20 1 1.6581 -0.2244 2.1389 21 7 1.5785 -2.1130 1.2308 22 6 1.4469 -2.8057 2.4046 23 1 1.6844 -2.3275 3.3434 24 6 1.0093 -4.1230 2.3880 25 7 0.7203 -4.7060 1.2438 26 14 0.8305 -5.0681 3.9893 27 1 1.2160 -4.1937 5.1259 28 1 -0.5805 -5.5011 4.1536 29 1 1.7143 -6.2612 3.9611 30 1 -0.3633 -1.0277 0.0015 31 1 -0.3633 0.5150 0.8893 32 1 -0.3634 0.5126 -0.8907 33 1 1.7638 -0.1579 -2.1389 34 1 1.6053 -1.7216 -1.2980 35 1 9.0536 2.1234 -2.8264 36 1 10.0654 1.6073 -4.1967 37 1 8.2919 1.6131 -4.3521 38 1 10.2108 -1.2767 -1.8477 39 1 11.1857 -0.0800 -2.7344 40 1 10.1743 0.4358 -1.3639 41 1 8.3433 -0.7908 -5.0310 42 1 10.1167 -0.7970 -4.8758 43 1 9.1416 -1.9930 -3.9891 44 1 3.8376 -2.4817 0.0866 45 1 5.1896 -1.3244 -0.0138 46 1 3.9334 -1.1895 2.1670 47 1 3.9159 0.3390 1.2540 48 1 1.3654 -2.5427 0.3876 49 1 0.4141 -5.6264 1.2322 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036041772.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:20 Heat of formation + Delta-G solvation = 97.376726 kcal Electronic energy + Delta-G solvation = -30442.626415 eV Core-core repulsion = 26443.095187 eV Total energy + Delta-G solvation = -3999.531228 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -45.64677 -41.41510 -39.23663 -38.63280 -36.03699 -34.79508 -34.53612 -33.48691 -32.92923 -30.93683 -28.76076 -28.53322 -28.16078 -26.94921 -25.78278 -25.55615 -24.94944 -23.06519 -21.97083 -21.44974 -19.87820 -19.25128 -18.65155 -18.42349 -17.78994 -17.43483 -16.69966 -16.31733 -15.95779 -15.84276 -15.35892 -15.31099 -15.16321 -15.01445 -14.81544 -14.37867 -14.24437 -14.08048 -13.62123 -13.46950 -13.32544 -13.23503 -12.99763 -12.96008 -12.87208 -12.84449 -12.70313 -12.63836 -12.49692 -12.28668 -12.13625 -12.12293 -12.04044 -11.93369 -11.70817 -11.57983 -11.50084 -11.27643 -11.12081 -10.74595 -9.75399 -8.89662 -7.86327 -5.12159 -0.18800 0.19926 0.63514 1.50069 1.51169 1.55993 1.60028 1.81540 2.61713 2.65025 2.89427 3.47527 3.47862 3.48806 3.62365 3.72548 3.87259 3.93072 4.08435 4.10992 4.19866 4.40013 4.41158 4.46679 4.52319 4.53094 4.58595 4.60882 4.65168 4.73054 4.73391 4.78498 4.89873 5.02242 5.03154 5.11497 5.12551 5.15779 5.17732 5.21375 5.25869 5.28753 5.40404 5.49736 5.60842 5.65093 6.13025 6.35791 6.67520 7.04092 7.43151 8.19283 8.43052 9.37274 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.016259 B = 0.002961 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1721.730737 B = 9452.873561 C =10399.161668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.098 4.098 3 H 0.089 0.911 4 C 0.124 3.876 5 N -0.573 5.573 6 C 0.611 3.389 7 O -0.548 6.548 8 C 0.120 3.880 9 N -0.267 5.267 10 N -0.059 5.059 11 N -0.106 5.106 12 C 0.158 3.842 13 C -0.156 4.156 14 C -0.150 4.150 15 C -0.158 4.158 16 N -0.254 5.254 17 C 0.086 3.914 18 C -0.135 4.135 19 C 0.171 3.829 20 H 0.052 0.948 21 N -0.724 5.724 22 C -0.222 4.222 23 H 0.076 0.924 24 C -0.076 4.076 25 N -0.970 5.970 26 Si 0.963 3.037 27 H -0.266 1.266 28 H -0.299 1.299 29 H -0.300 1.300 30 H 0.041 0.959 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.094 0.906 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.130 0.870 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.128 0.872 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.131 0.869 43 H 0.059 0.941 44 H 0.050 0.950 45 H 0.135 0.865 46 H 0.066 0.934 47 H 0.070 0.930 48 H 0.373 0.627 49 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.779 13.857 -10.185 26.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.118 4.118 3 H 0.107 0.893 4 C 0.002 3.998 5 N -0.304 5.304 6 C 0.393 3.607 7 O -0.424 6.424 8 C -0.163 4.163 9 N -0.140 5.140 10 N -0.050 5.050 11 N -0.023 5.023 12 C 0.080 3.920 13 C -0.215 4.215 14 C -0.208 4.208 15 C -0.216 4.216 16 N -0.108 5.108 17 C -0.036 4.036 18 C -0.175 4.175 19 C 0.063 3.937 20 H 0.070 0.930 21 N -0.365 5.365 22 C -0.354 4.354 23 H 0.094 0.906 24 C -0.268 4.268 25 N -0.621 5.621 26 Si 0.794 3.206 27 H -0.191 1.191 28 H -0.227 1.227 29 H -0.228 1.228 30 H 0.060 0.940 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.113 0.887 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.149 0.851 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.147 0.853 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.149 0.851 43 H 0.078 0.922 44 H 0.069 0.931 45 H 0.152 0.848 46 H 0.084 0.916 47 H 0.089 0.911 48 H 0.207 0.793 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 21.096 13.992 -10.254 27.312 hybrid contribution -1.128 -1.313 0.498 1.801 sum 19.967 12.680 -9.756 25.586 Atomic orbital electron populations 1.21595 0.93427 1.01708 1.02073 1.21655 0.96987 0.99375 0.93801 0.89271 1.21745 0.77155 1.01183 0.99738 1.47902 1.07221 1.57438 1.17812 1.16340 0.82041 0.78697 0.83573 1.90775 1.73492 1.49368 1.28736 1.25077 0.97415 1.06083 0.87750 1.75758 0.96534 1.18474 1.23221 1.78850 1.13460 1.13607 0.99087 1.51340 1.07565 1.37114 1.06302 1.22266 0.75596 1.00359 0.93813 1.22308 1.06208 0.90489 1.02457 1.22186 0.95845 1.03853 0.98935 1.22317 1.06126 0.97736 0.95460 1.74934 0.91326 1.18949 1.25558 1.22608 1.01562 0.96510 0.82958 1.22327 0.98408 0.99841 0.96955 1.20475 0.91974 0.85256 0.96026 0.92999 1.42592 1.78974 1.09312 1.05641 1.19607 1.34275 0.93850 0.87681 0.90639 1.25393 1.03800 0.98435 0.99130 1.69816 1.54114 1.12784 1.25417 0.85206 0.76375 0.78567 0.80447 1.19081 1.22690 1.22773 0.94012 0.91956 0.91323 0.88725 0.92161 0.91876 0.85121 0.91755 0.91344 0.85319 0.91074 0.91774 0.85081 0.92174 0.93125 0.84792 0.91553 0.91109 0.79303 0.94457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.07 9.06 71.98 0.65 -3.42 16 2 C -0.10 -3.19 2.67 -10.72 -0.03 -3.22 16 3 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 4 C 0.12 4.32 5.40 86.36 0.47 4.79 16 5 N -0.57 -20.47 2.97 -822.13 -2.44 -22.92 16 6 C 0.61 22.28 7.71 86.83 0.67 22.95 16 7 O -0.55 -22.02 16.53 -3.83 -0.06 -22.09 16 8 C 0.12 3.98 7.86 137.15 1.08 5.06 16 9 N -0.27 -8.41 8.96 -52.36 -0.47 -8.88 16 10 N -0.06 -1.57 12.21 37.02 0.45 -1.12 16 11 N -0.11 -2.44 3.72 -152.26 -0.57 -3.01 16 12 C 0.16 1.94 1.30 3.60 0.00 1.94 16 13 C -0.16 -1.38 8.66 71.98 0.62 -0.76 16 14 C -0.15 -1.16 7.90 71.98 0.57 -0.59 16 15 C -0.16 -1.52 8.66 71.98 0.62 -0.90 16 16 N -0.25 -7.43 11.85 -52.31 -0.62 -8.05 16 17 C 0.09 3.15 6.08 86.36 0.52 3.67 16 18 C -0.13 -4.71 5.78 30.67 0.18 -4.53 16 19 C 0.17 6.48 2.53 45.02 0.11 6.59 16 20 H 0.05 1.98 8.08 -2.39 -0.02 1.96 16 21 N -0.72 -34.44 3.64 -322.82 -1.17 -35.62 16 22 C -0.22 -11.82 9.93 84.03 0.83 -10.98 16 23 H 0.08 3.88 7.83 -2.91 -0.02 3.86 16 24 C -0.08 -4.27 5.50 84.86 0.47 -3.80 16 25 N -0.97 -58.77 13.06 21.65 0.28 -58.49 16 26 Si 0.96 46.10 29.55 68.60 2.03 48.13 16 27 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 28 H -0.30 -14.48 7.11 99.48 0.71 -13.78 16 29 H -0.30 -14.57 7.11 99.48 0.71 -13.86 16 30 H 0.04 1.56 7.53 -2.38 -0.02 1.55 16 31 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.09 3.16 7.04 -2.39 -0.02 3.15 16 34 H 0.06 2.38 6.64 -2.38 -0.02 2.37 16 35 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 36 H 0.13 0.14 8.14 -2.39 -0.02 0.12 16 37 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.13 0.03 8.14 -2.39 -0.02 0.01 16 40 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.13 0.23 8.14 -2.39 -0.02 0.21 16 43 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.05 2.18 7.74 -2.39 -0.02 2.16 16 45 H 0.14 4.66 3.71 -76.34 -0.28 4.38 16 46 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 47 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 48 H 0.37 19.35 5.93 -92.71 -0.55 18.81 16 49 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -71.00 389.63 4.33 -66.66 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: 0.13 Total: 28.56 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: 6.77 Total: 16.81 kcal Atomic # 7 Polarization: -133.54 SS G_CDS: -4.54 Total: -138.08 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: -0.06 Total: -22.09 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -71.00 4.33 -66.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036041772.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.040 kcal (2) G-P(sol) polarization free energy of solvation -70.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds