Wall clock time and date at job start Tue Mar 31 2020 21:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 N 1.31077 * 126.65626 * 59.68706 * 4 2 1 6 6 N 1.28844 * 107.98428 * 179.89869 * 5 4 2 7 7 N 1.28731 * 109.40046 * 0.37206 * 6 5 4 8 8 N 1.29018 * 108.81375 * 359.77197 * 7 6 5 9 9 C 1.46498 * 126.44504 * 179.97438 * 8 7 6 10 10 C 1.50691 * 109.47063 * 270.02570 * 9 8 7 11 11 O 1.21278 * 120.00265 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00158 * 179.97438 * 10 9 8 13 13 C 1.46929 * 120.62707 * 0.02562 * 12 10 9 14 14 C 1.53195 * 108.77594 * 126.36987 * 13 12 10 15 15 C 1.53032 * 109.31443 * 54.62789 * 14 13 12 16 16 H 1.08999 * 109.46235 * 178.61183 * 15 14 13 17 17 N 1.46505 * 109.45844 * 58.66115 * 15 14 13 18 18 C 1.36929 * 120.00209 * 84.99732 * 17 15 14 19 19 H 1.08001 * 120.00527 * 359.97438 * 18 17 15 20 20 C 1.38811 * 120.00076 * 180.02562 * 18 17 15 21 21 N 1.31615 * 120.00125 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00213 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47000 * 60.00091 * 22 20 18 24 24 H 1.48497 * 109.47560 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47354 * 300.00411 * 22 20 18 26 26 C 1.53037 * 109.54367 * 298.63928 * 15 14 13 27 27 H 1.09005 * 109.49557 * 301.41610 * 26 15 14 28 28 C 1.52998 * 109.50055 * 181.34888 * 26 15 14 29 29 C 1.46926 * 120.63354 * 179.71432 * 12 10 9 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 33 33 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 34 34 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 35 35 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 37 37 H 1.09000 * 109.46722 * 30.02053 * 9 8 7 38 38 H 1.08999 * 109.47429 * 150.02098 * 9 8 7 39 39 H 1.09004 * 109.58082 * 246.15221 * 13 12 10 40 40 H 1.09000 * 109.58756 * 6.43522 * 13 12 10 41 41 H 1.08995 * 109.49864 * 174.58630 * 14 13 12 42 42 H 1.09006 * 109.49473 * 294.68103 * 14 13 12 43 43 H 0.97000 * 119.99753 * 264.99648 * 17 15 14 44 44 H 0.97002 * 120.00513 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.47024 * 60.00142 * 28 26 15 46 46 H 1.08997 * 109.47386 * 179.97438 * 28 26 15 47 47 H 1.09000 * 109.47136 * 299.99795 * 28 26 15 48 48 H 1.09005 * 109.58745 * 353.42590 * 29 12 10 49 49 H 1.09003 * 109.58205 * 113.84271 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 7 1.7929 -0.3817 -2.4764 6 7 2.3979 -1.2296 -3.2349 7 7 3.0106 -2.0951 -2.5050 8 7 2.8093 -1.8091 -1.2631 9 6 3.3283 -2.5426 -0.1060 10 6 2.3462 -3.6143 0.2911 11 8 1.3141 -3.7517 -0.3309 12 7 2.6147 -4.4203 1.3374 13 6 3.8605 -4.2657 2.1009 14 6 3.5134 -4.1123 3.5851 15 6 2.6476 -5.2942 4.0273 16 1 2.4197 -5.2002 5.0890 17 7 3.3732 -6.5452 3.7931 18 6 4.2562 -7.0104 4.7306 19 1 4.4181 -6.4549 5.6426 20 6 4.9440 -8.1954 4.5085 21 7 4.7479 -8.8717 3.3966 22 14 6.1491 -8.8297 5.7871 23 1 5.4345 -9.0643 7.0675 24 1 6.7477 -10.1038 5.3142 25 1 7.2229 -7.8254 5.9964 26 6 1.3445 -5.3027 3.2249 27 1 0.8161 -4.3619 3.3792 28 6 0.4652 -6.4647 3.6911 29 6 1.6642 -5.4657 1.7405 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.6767 1.9563 0.8899 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9564 -0.8900 37 1 4.2822 -3.0019 -0.3651 38 1 3.4708 -1.8538 0.7267 39 1 4.4863 -5.1473 1.9613 40 1 4.3938 -3.3804 1.7547 41 1 4.4308 -4.0932 4.1732 42 1 2.9645 -3.1827 3.7361 43 1 3.2280 -7.0440 2.9740 44 1 5.2282 -9.7000 3.2414 45 1 0.2384 -6.3463 4.7506 46 1 -0.4629 -6.4701 3.1196 47 1 0.9936 -7.4053 3.5354 48 1 0.7476 -5.3704 1.1582 49 1 2.1069 -6.4472 1.5707 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036217622.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:34 Heat of formation + Delta-G solvation = 89.117584 kcal Electronic energy + Delta-G solvation = -30596.957230 eV Core-core repulsion = 26597.067859 eV Total energy + Delta-G solvation = -3999.889371 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.28693 -40.42432 -38.11679 -36.42476 -35.49235 -34.59040 -33.06211 -31.65492 -31.56545 -29.60493 -29.29666 -27.55736 -26.33787 -25.16467 -24.57464 -23.66310 -23.29554 -21.87743 -21.06956 -20.10744 -18.57867 -18.11129 -17.48342 -17.41579 -16.46847 -16.10649 -15.73220 -15.42674 -14.93148 -14.76012 -14.48726 -14.15025 -13.93608 -13.67411 -13.58538 -13.43319 -13.30103 -12.83214 -12.65921 -12.54640 -12.41169 -12.28118 -11.97590 -11.75194 -11.68940 -11.58505 -11.50552 -11.44499 -11.33529 -11.08977 -11.00752 -10.95510 -10.69461 -10.66321 -10.33027 -10.16552 -10.01282 -9.87768 -9.69464 -9.06348 -8.56652 -7.12080 -5.90677 -3.20376 1.08137 1.67060 2.18159 2.26834 2.86400 3.33525 3.39122 3.40684 3.64046 3.92332 4.02953 4.19945 4.46731 4.47425 4.61391 4.73884 4.87831 4.91186 5.08869 5.17095 5.25846 5.26940 5.28489 5.39531 5.40191 5.48366 5.53232 5.54193 5.58702 5.61065 5.71560 5.82908 5.86260 5.88594 5.91662 5.95200 6.04439 6.12435 6.18689 6.32756 6.37497 6.49481 6.56825 6.72395 6.81807 7.27662 7.56657 7.87169 8.27275 8.53901 9.39167 9.94024 10.28660 11.31307 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.018424 B = 0.002853 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.391008 B = 9810.896639 C =10097.531952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.011 4.011 3 C -0.143 4.143 4 C 0.201 3.799 5 N -0.302 5.302 6 N -0.076 5.076 7 N -0.084 5.084 8 N -0.292 5.292 9 C 0.092 3.908 10 C 0.500 3.500 11 O -0.532 6.532 12 N -0.589 5.589 13 C 0.107 3.893 14 C -0.150 4.150 15 C 0.178 3.822 16 H 0.053 0.947 17 N -0.719 5.719 18 C -0.243 4.243 19 H 0.070 0.930 20 C -0.009 4.009 21 N -0.931 5.931 22 Si 0.905 3.095 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.286 1.286 26 C -0.108 4.108 27 H 0.066 0.934 28 C -0.138 4.138 29 C 0.120 3.880 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.143 0.857 38 H 0.138 0.862 39 H 0.094 0.906 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.050 0.950 43 H 0.384 0.616 44 H 0.257 0.743 45 H 0.055 0.945 46 H 0.044 0.956 47 H 0.072 0.928 48 H 0.085 0.915 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.857 17.580 -1.308 18.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.033 4.033 3 C -0.202 4.202 4 C -0.077 4.077 5 N -0.151 5.151 6 N -0.070 5.070 7 N -0.069 5.069 8 N -0.092 5.092 9 C -0.034 4.034 10 C 0.284 3.716 11 O -0.409 6.409 12 N -0.321 5.321 13 C -0.015 4.015 14 C -0.192 4.192 15 C 0.067 3.933 16 H 0.071 0.929 17 N -0.361 5.361 18 C -0.374 4.374 19 H 0.088 0.912 20 C -0.205 4.205 21 N -0.579 5.579 22 Si 0.736 3.264 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.213 1.213 26 C -0.128 4.128 27 H 0.084 0.916 28 C -0.196 4.196 29 C -0.002 4.002 30 H 0.081 0.919 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.108 0.892 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.161 0.839 38 H 0.156 0.844 39 H 0.112 0.888 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.069 0.931 43 H 0.219 0.781 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.063 0.937 47 H 0.091 0.909 48 H 0.104 0.896 49 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.161 17.247 -2.941 18.242 hybrid contribution 0.945 -0.819 1.510 1.961 sum -4.216 16.428 -1.431 17.021 Atomic orbital electron populations 1.21821 0.91738 1.03285 1.03304 1.19787 0.97887 0.95986 0.89612 1.21850 1.01234 0.93418 1.03655 1.26052 0.94690 0.89000 0.97950 1.74927 1.19796 1.22020 0.98335 1.78587 1.06949 0.98984 1.22453 1.78898 1.20224 1.20572 0.87255 1.47912 1.34561 1.19858 1.06892 1.22099 0.99483 0.95808 0.85967 1.20125 0.87184 0.82840 0.81415 1.90783 1.26427 1.70852 1.52852 1.48081 1.21671 1.33178 1.29214 1.21901 0.84734 1.02539 0.92354 1.22548 1.02301 0.99650 0.94654 1.20212 0.89092 0.87048 0.96903 0.92866 1.42475 1.48756 1.22245 1.22647 1.19147 1.15646 1.03968 0.98637 0.91249 1.24714 1.00559 0.97803 0.97447 1.69626 1.45620 1.17421 1.25222 0.86314 0.81089 0.78106 0.80895 1.21311 1.21761 1.21299 1.21626 0.97629 0.99185 0.94334 0.91566 1.21666 0.98177 0.99149 1.00578 1.21654 0.92921 0.90243 0.95405 0.91855 0.91096 0.90914 0.89152 0.90770 0.92369 0.90958 0.83935 0.84440 0.88795 0.91469 0.90299 0.93125 0.78096 0.93336 0.92617 0.93702 0.90940 0.89627 0.90138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.18 37.16 0.34 -0.85 16 2 C -0.01 -0.09 3.26 -91.77 -0.30 -0.39 16 3 C -0.14 -0.91 9.18 37.16 0.34 -0.57 16 4 C 0.20 2.46 6.64 -155.42 -1.03 1.42 16 5 N -0.30 -4.50 12.36 32.70 0.40 -4.09 16 6 N -0.08 -1.26 13.43 60.35 0.81 -0.45 16 7 N -0.08 -1.32 13.29 60.35 0.80 -0.52 16 8 N -0.29 -3.73 2.83 -59.45 -0.17 -3.90 16 9 C 0.09 0.89 4.91 -5.20 -0.03 0.86 16 10 C 0.50 6.62 7.77 -10.99 -0.09 6.53 16 11 O -0.53 -9.18 15.84 5.56 0.09 -9.09 16 12 N -0.59 -7.72 2.98 -173.05 -0.52 -8.24 16 13 C 0.11 1.30 6.09 -3.71 -0.02 1.28 16 14 C -0.15 -1.97 5.78 -26.61 -0.15 -2.12 16 15 C 0.18 2.86 2.53 -67.89 -0.17 2.69 16 16 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 17 N -0.72 -14.98 3.64 -53.39 -0.19 -15.17 16 18 C -0.24 -5.89 9.93 -15.06 -0.15 -6.04 16 19 H 0.07 1.64 7.83 -52.49 -0.41 1.23 16 20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 21 N -0.93 -25.80 13.06 55.49 0.72 -25.08 16 22 Si 0.90 20.75 29.55 -169.99 -5.02 15.73 16 23 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 26 C -0.11 -1.52 2.65 -90.75 -0.24 -1.76 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 28 C -0.14 -1.99 9.06 37.16 0.34 -1.66 16 29 C 0.12 1.76 5.39 -3.96 -0.02 1.74 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.09 0.59 6.85 -51.93 -0.36 0.23 16 34 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.14 1.12 7.94 -51.93 -0.41 0.71 16 38 H 0.14 0.77 6.68 -51.93 -0.35 0.43 16 39 H 0.09 1.44 7.74 -51.93 -0.40 1.04 16 40 H 0.07 0.55 5.93 -51.93 -0.31 0.24 16 41 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.38 8.69 5.94 -40.82 -0.24 8.45 16 44 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 45 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.07 1.24 7.54 -51.93 -0.39 0.85 16 48 H 0.09 1.30 7.01 -51.93 -0.36 0.94 16 49 H 0.08 1.36 6.64 -51.93 -0.35 1.01 16 LS Contribution 392.21 15.07 5.91 5.91 Total: -1.00 -32.07 392.21 -6.22 -38.29 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -7.78 Total: 5.80 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -1.28 Total: 0.81 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: 1.86 Total: -57.45 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.09 Total: -9.09 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.07 -6.22 -38.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036217622.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.411 kcal (2) G-P(sol) polarization free energy of solvation -32.069 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds