Wall clock time and date at job start Tue Mar 31 2020 21:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99643 * 2 1 3 5 5 N 1.31077 * 126.65626 * 59.68706 * 4 2 1 6 6 N 1.28844 * 107.98428 * 179.89869 * 5 4 2 7 7 N 1.28731 * 109.40046 * 0.37206 * 6 5 4 8 8 N 1.29018 * 108.81375 * 359.77197 * 7 6 5 9 9 C 1.46498 * 126.44504 * 179.97438 * 8 7 6 10 10 C 1.50691 * 109.47063 * 270.02570 * 9 8 7 11 11 O 1.21278 * 120.00265 * 359.97438 * 10 9 8 12 12 N 1.34778 * 120.00158 * 179.97438 * 10 9 8 13 13 C 1.46929 * 120.62707 * 0.02562 * 12 10 9 14 14 C 1.53195 * 108.77594 * 126.36987 * 13 12 10 15 15 C 1.53032 * 109.31443 * 54.62789 * 14 13 12 16 16 H 1.08999 * 109.46235 * 178.61183 * 15 14 13 17 17 N 1.46505 * 109.45844 * 58.66115 * 15 14 13 18 18 C 1.36929 * 120.00209 * 84.99732 * 17 15 14 19 19 H 1.08001 * 120.00527 * 359.97438 * 18 17 15 20 20 C 1.38811 * 120.00076 * 180.02562 * 18 17 15 21 21 N 1.31615 * 120.00125 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00213 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47000 * 60.00091 * 22 20 18 24 24 H 1.48497 * 109.47560 * 179.97438 * 22 20 18 25 25 H 1.48503 * 109.47354 * 300.00411 * 22 20 18 26 26 C 1.53037 * 109.54367 * 298.63928 * 15 14 13 27 27 H 1.09005 * 109.49557 * 301.41610 * 26 15 14 28 28 C 1.52998 * 109.50055 * 181.34888 * 26 15 14 29 29 C 1.46926 * 120.63354 * 179.71432 * 12 10 9 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 33 33 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 34 34 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 35 35 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 36 36 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 37 37 H 1.09000 * 109.46722 * 30.02053 * 9 8 7 38 38 H 1.08999 * 109.47429 * 150.02098 * 9 8 7 39 39 H 1.09004 * 109.58082 * 246.15221 * 13 12 10 40 40 H 1.09000 * 109.58756 * 6.43522 * 13 12 10 41 41 H 1.08995 * 109.49864 * 174.58630 * 14 13 12 42 42 H 1.09006 * 109.49473 * 294.68103 * 14 13 12 43 43 H 0.97000 * 119.99753 * 264.99648 * 17 15 14 44 44 H 0.97002 * 120.00513 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.47024 * 60.00142 * 28 26 15 46 46 H 1.08997 * 109.47386 * 179.97438 * 28 26 15 47 47 H 1.09000 * 109.47136 * 299.99795 * 28 26 15 48 48 H 1.09005 * 109.58745 * 353.42590 * 29 12 10 49 49 H 1.09003 * 109.58205 * 113.84271 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7105 -1.2304 5 7 1.7929 -0.3817 -2.4764 6 7 2.3979 -1.2296 -3.2349 7 7 3.0106 -2.0951 -2.5050 8 7 2.8093 -1.8091 -1.2631 9 6 3.3283 -2.5426 -0.1060 10 6 2.3462 -3.6143 0.2911 11 8 1.3141 -3.7517 -0.3309 12 7 2.6147 -4.4203 1.3374 13 6 3.8605 -4.2657 2.1009 14 6 3.5134 -4.1123 3.5851 15 6 2.6476 -5.2942 4.0273 16 1 2.4197 -5.2002 5.0890 17 7 3.3732 -6.5452 3.7931 18 6 4.2562 -7.0104 4.7306 19 1 4.4181 -6.4549 5.6426 20 6 4.9440 -8.1954 4.5085 21 7 4.7479 -8.8717 3.3966 22 14 6.1491 -8.8297 5.7871 23 1 5.4345 -9.0643 7.0675 24 1 6.7477 -10.1038 5.3142 25 1 7.2229 -7.8254 5.9964 26 6 1.3445 -5.3027 3.2249 27 1 0.8161 -4.3619 3.3792 28 6 0.4652 -6.4647 3.6911 29 6 1.6642 -5.4657 1.7405 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5139 0.8900 33 1 1.8934 -0.5137 0.8900 34 1 1.6767 1.9563 0.8899 35 1 3.1300 1.4425 0.0005 36 1 1.6767 1.9564 -0.8900 37 1 4.2822 -3.0019 -0.3651 38 1 3.4708 -1.8538 0.7267 39 1 4.4863 -5.1473 1.9613 40 1 4.3938 -3.3804 1.7547 41 1 4.4308 -4.0932 4.1732 42 1 2.9645 -3.1827 3.7361 43 1 3.2280 -7.0440 2.9740 44 1 5.2282 -9.7000 3.2414 45 1 0.2384 -6.3463 4.7506 46 1 -0.4629 -6.4701 3.1196 47 1 0.9936 -7.4053 3.5354 48 1 0.7476 -5.3704 1.1582 49 1 2.1069 -6.4472 1.5707 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036217622.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:33 Heat of formation + Delta-G solvation = 67.989783 kcal Electronic energy + Delta-G solvation = -30597.873401 eV Core-core repulsion = 26597.067859 eV Total energy + Delta-G solvation = -4000.805541 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -45.30484 -41.52935 -39.32570 -37.15864 -36.46293 -35.96829 -34.54344 -33.00615 -32.54323 -30.95092 -30.45591 -28.09394 -27.52257 -26.47553 -25.47783 -25.29074 -24.31671 -23.05806 -21.88719 -21.12688 -19.80281 -19.26422 -19.00773 -18.46615 -17.54447 -17.03571 -16.81553 -16.38146 -16.36004 -15.90490 -15.61112 -15.50857 -15.02576 -14.82704 -14.61953 -14.35078 -14.22960 -14.18013 -13.76343 -13.58510 -13.26415 -13.07573 -12.99294 -12.94666 -12.82350 -12.72732 -12.64940 -12.49304 -12.36065 -12.28808 -12.27346 -12.15905 -11.96977 -11.89622 -11.88480 -11.56630 -11.20807 -11.13362 -10.95433 -10.78477 -9.72679 -8.89705 -7.86863 -5.12430 0.08828 0.80623 1.12801 1.26503 1.51724 1.52860 1.58340 1.84437 2.61816 2.87713 3.08061 3.13326 3.47958 3.56041 3.79130 3.85725 3.90042 4.03145 4.04285 4.06671 4.11397 4.18242 4.29642 4.38008 4.40268 4.51430 4.62772 4.68847 4.72428 4.79681 4.83552 4.85478 4.91993 4.93219 4.99447 5.02780 5.12593 5.16559 5.21867 5.29942 5.31265 5.35378 5.37467 5.50165 5.62363 5.64438 6.24367 6.35119 6.83581 7.43119 7.47934 8.20900 8.42095 9.36153 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.018424 B = 0.002853 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.391008 B = 9810.896639 C =10097.531952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.012 4.012 3 C -0.139 4.139 4 C 0.210 3.790 5 N -0.328 5.328 6 N -0.106 5.106 7 N -0.108 5.108 8 N -0.291 5.291 9 C 0.088 3.912 10 C 0.502 3.498 11 O -0.577 6.577 12 N -0.585 5.585 13 C 0.109 3.891 14 C -0.142 4.142 15 C 0.169 3.831 16 H 0.049 0.951 17 N -0.727 5.727 18 C -0.222 4.222 19 H 0.078 0.922 20 C -0.073 4.073 21 N -0.970 5.970 22 Si 0.960 3.040 23 H -0.284 1.284 24 H -0.307 1.307 25 H -0.277 1.277 26 C -0.096 4.096 27 H 0.094 0.906 28 C -0.134 4.134 29 C 0.125 3.875 30 H 0.038 0.962 31 H 0.057 0.943 32 H 0.103 0.897 33 H 0.120 0.880 34 H 0.101 0.899 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.165 0.835 38 H 0.192 0.808 39 H 0.057 0.943 40 H 0.120 0.880 41 H 0.072 0.928 42 H 0.090 0.910 43 H 0.372 0.628 44 H 0.246 0.754 45 H 0.061 0.939 46 H 0.060 0.940 47 H 0.036 0.964 48 H 0.079 0.921 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.508 20.879 0.899 21.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.034 4.034 3 C -0.197 4.197 4 C -0.068 4.068 5 N -0.177 5.177 6 N -0.100 5.100 7 N -0.094 5.094 8 N -0.092 5.092 9 C -0.035 4.035 10 C 0.289 3.711 11 O -0.457 6.457 12 N -0.316 5.316 13 C -0.013 4.013 14 C -0.182 4.182 15 C 0.060 3.940 16 H 0.067 0.933 17 N -0.368 5.368 18 C -0.355 4.355 19 H 0.096 0.904 20 C -0.265 4.265 21 N -0.622 5.622 22 Si 0.791 3.209 23 H -0.211 1.211 24 H -0.234 1.234 25 H -0.203 1.203 26 C -0.115 4.115 27 H 0.112 0.888 28 C -0.192 4.192 29 C 0.002 3.998 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.121 0.879 33 H 0.138 0.862 34 H 0.119 0.881 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.182 0.818 38 H 0.209 0.791 39 H 0.075 0.925 40 H 0.138 0.862 41 H 0.091 0.909 42 H 0.108 0.892 43 H 0.206 0.794 44 H 0.055 0.945 45 H 0.080 0.920 46 H 0.079 0.921 47 H 0.056 0.944 48 H 0.097 0.903 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.808 20.605 -0.692 21.169 hybrid contribution 0.715 -1.796 0.877 2.122 sum -4.092 18.809 0.185 19.250 Atomic orbital electron populations 1.21815 0.92009 1.01883 1.04210 1.20145 0.97561 0.97057 0.88607 1.21853 1.01639 0.91958 1.04252 1.26841 0.93152 0.88391 0.98381 1.74850 1.20578 1.22534 0.99713 1.78549 1.07979 0.99828 1.23617 1.78808 1.20928 1.20922 0.88692 1.48108 1.34441 1.19997 1.06643 1.22534 0.98574 0.95868 0.86566 1.20671 0.87085 0.83037 0.80338 1.90780 1.28675 1.72188 1.54034 1.48053 1.21552 1.32573 1.29443 1.21951 0.83969 1.03307 0.92058 1.22409 1.01642 0.99433 0.94762 1.20503 0.90081 0.86249 0.97132 0.93328 1.42624 1.48649 1.23982 1.21530 1.19525 1.14182 1.02972 0.98780 0.90425 1.25347 1.03144 0.98932 0.99114 1.69784 1.47377 1.17758 1.27245 0.85412 0.79591 0.76998 0.78930 1.21078 1.23398 1.20290 1.21537 0.96717 1.00066 0.93216 0.88825 1.21617 0.98617 0.97726 1.01275 1.21419 0.92872 0.89612 0.95905 0.94306 0.92393 0.87883 0.86191 0.88051 0.91700 0.92518 0.81751 0.79098 0.92458 0.86233 0.90926 0.89175 0.79449 0.94537 0.92034 0.92094 0.94450 0.90290 0.93255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.18 71.98 0.66 -1.33 16 2 C -0.01 -0.15 3.26 -11.54 -0.04 -0.19 16 3 C -0.14 -1.22 9.18 71.98 0.66 -0.56 16 4 C 0.21 4.69 6.64 138.13 0.92 5.61 16 5 N -0.33 -9.63 12.36 -50.45 -0.62 -10.25 16 6 N -0.11 -3.54 13.43 37.01 0.50 -3.05 16 7 N -0.11 -3.31 13.29 37.02 0.49 -2.82 16 8 N -0.29 -6.78 2.83 -341.99 -0.97 -7.75 16 9 C 0.09 1.34 4.91 85.63 0.42 1.76 16 10 C 0.50 11.98 7.77 87.65 0.68 12.66 16 11 O -0.58 -19.32 15.84 -3.02 -0.05 -19.37 16 12 N -0.59 -13.93 2.98 -819.81 -2.44 -16.38 16 13 C 0.11 2.27 6.09 86.36 0.53 2.80 16 14 C -0.14 -3.14 5.78 30.67 0.18 -2.96 16 15 C 0.17 5.07 2.53 45.01 0.11 5.18 16 16 H 0.05 1.52 8.08 -2.39 -0.02 1.50 16 17 N -0.73 -30.20 3.64 -322.83 -1.18 -31.38 16 18 C -0.22 -10.70 9.93 84.03 0.83 -9.86 16 19 H 0.08 3.55 7.83 -2.91 -0.02 3.53 16 20 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 21 N -0.97 -55.56 13.06 21.65 0.28 -55.27 16 22 Si 0.96 43.04 29.55 68.60 2.03 45.07 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 24 H -0.31 -14.41 7.11 99.48 0.71 -13.71 16 25 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 26 C -0.10 -2.52 2.65 -10.88 -0.03 -2.54 16 27 H 0.09 2.03 8.14 -2.38 -0.02 2.01 16 28 C -0.13 -3.81 9.06 71.98 0.65 -3.15 16 29 C 0.12 3.61 5.39 86.20 0.46 4.07 16 30 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.12 0.83 6.85 -2.39 -0.02 0.82 16 34 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.17 1.86 7.94 -2.39 -0.02 1.84 16 38 H 0.19 0.79 6.68 -2.39 -0.02 0.77 16 39 H 0.06 1.68 7.74 -2.38 -0.02 1.66 16 40 H 0.12 1.25 5.93 -2.39 -0.01 1.24 16 41 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 43 H 0.37 17.36 5.94 -92.71 -0.55 16.81 16 44 H 0.25 14.05 8.31 -92.71 -0.77 13.28 16 45 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.04 1.31 7.54 -2.39 -0.02 1.30 16 48 H 0.08 2.40 7.01 -2.38 -0.02 2.38 16 49 H 0.05 1.74 6.64 -2.39 -0.02 1.72 16 Total: -1.00 -75.55 392.21 4.96 -70.59 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: 0.41 Total: 22.51 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: 6.51 Total: 8.10 kcal Atomic # 7 Polarization: -122.96 SS G_CDS: -3.94 Total: -126.90 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.05 Total: -19.37 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -75.55 4.96 -70.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036217622.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.580 kcal (2) G-P(sol) polarization free energy of solvation -75.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds