Wall clock time and date at job start Tue Mar 31 2020 21:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47664 * 2 1 4 4 C 1.50696 * 109.46917 * 120.00581 * 2 1 3 5 5 N 1.31076 * 126.65921 * 300.01737 * 4 2 1 6 6 N 1.28844 * 107.99078 * 179.97438 * 5 4 2 7 7 N 1.28735 * 109.39970 * 0.02562 * 6 5 4 8 8 N 1.29020 * 108.80643 * 359.97438 * 7 6 5 9 9 C 1.46499 * 126.43911 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47489 * 89.97029 * 9 8 7 11 11 O 1.21281 * 119.99963 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00232 * 179.97438 * 10 9 8 13 13 C 1.46929 * 120.63274 * 359.72687 * 12 10 9 14 14 C 1.52760 * 109.01122 * 233.58348 * 13 12 10 15 15 C 1.53037 * 109.38183 * 305.58726 * 14 13 12 16 16 H 1.08998 * 109.46046 * 181.26099 * 15 14 13 17 17 N 1.46504 * 109.45921 * 301.21657 * 15 14 13 18 18 C 1.36929 * 120.00029 * 275.07217 * 17 15 14 19 19 H 1.07999 * 120.00292 * 359.97438 * 18 17 15 20 20 C 1.38819 * 120.00104 * 180.02562 * 18 17 15 21 21 N 1.31616 * 119.99846 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00003 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47296 * 89.99910 * 22 20 18 24 24 H 1.48508 * 109.47108 * 209.99698 * 22 20 18 25 25 H 1.48496 * 109.47633 * 329.99914 * 22 20 18 26 26 C 1.53042 * 109.54061 * 61.23915 * 15 14 13 27 27 H 1.09001 * 109.49719 * 58.58718 * 26 15 14 28 28 C 1.53003 * 109.49968 * 178.68426 * 26 15 14 29 29 C 1.46927 * 120.63082 * 180.02562 * 12 10 9 30 30 H 1.08997 * 109.46788 * 299.99943 * 1 2 3 31 31 H 1.09002 * 109.46627 * 59.99727 * 1 2 3 32 32 H 1.08998 * 109.47709 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46799 * 240.00046 * 2 1 3 34 34 H 1.09007 * 109.46518 * 59.99877 * 3 2 1 35 35 H 1.08995 * 109.47090 * 179.97438 * 3 2 1 36 36 H 1.08999 * 109.47109 * 300.00584 * 3 2 1 37 37 H 1.09000 * 109.47699 * 209.97736 * 9 8 7 38 38 H 1.09011 * 109.47015 * 329.97341 * 9 8 7 39 39 H 1.09004 * 109.58284 * 353.41783 * 13 12 10 40 40 H 1.08996 * 109.58784 * 113.83554 * 13 12 10 41 41 H 1.08995 * 109.56826 * 185.54779 * 14 13 12 42 42 H 1.09009 * 109.38660 * 65.51138 * 14 13 12 43 43 H 0.97001 * 119.99855 * 95.06903 * 17 15 14 44 44 H 0.96994 * 119.99905 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.47123 * 179.83783 * 28 26 15 46 46 H 1.08997 * 109.47014 * 299.84036 * 28 26 15 47 47 H 1.09006 * 109.46798 * 59.83548 * 28 26 15 48 48 H 1.08997 * 109.58819 * 246.15549 * 29 12 10 49 49 H 1.08994 * 109.58396 * 6.44261 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7972 -0.3788 2.4765 6 7 2.3981 -1.2294 3.2349 7 7 3.0109 -2.0950 2.5051 8 7 2.8092 -1.8091 1.2632 9 6 3.3282 -2.5427 0.1061 10 6 2.3463 -3.6149 -0.2906 11 8 1.3144 -3.7524 0.3316 12 7 2.6144 -4.4202 -1.3375 13 6 3.8570 -4.2612 -2.1054 14 6 3.5113 -4.1109 -3.5858 15 6 2.6458 -5.2931 -4.0278 16 1 2.4170 -5.1987 -5.0893 17 7 3.3721 -6.5438 -3.7946 18 6 4.2557 -7.0074 -4.7323 19 1 4.4169 -6.4513 -5.6440 20 6 4.9436 -8.1929 -4.5116 21 7 4.7468 -8.8709 -3.4009 22 14 6.1484 -8.8257 -5.7911 23 1 7.5005 -8.2789 -5.5112 24 1 6.1936 -10.3091 -5.7376 25 1 5.7093 -8.3922 -7.1418 26 6 1.3432 -5.3025 -3.2244 27 1 0.8142 -4.3619 -3.3780 28 6 0.4645 -6.4653 -3.6898 29 6 1.6667 -5.4696 -1.7367 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8901 34 1 1.6768 1.9562 0.8901 35 1 3.1301 1.4423 0.0005 36 1 1.6768 1.9563 -0.8899 37 1 3.4704 -1.8540 -0.7268 38 1 4.2824 -3.0017 0.3650 39 1 4.3867 -3.3721 -1.7632 40 1 4.4868 -5.1400 -1.9674 41 1 4.4283 -4.0911 -4.1746 42 1 2.9621 -3.1814 -3.7365 43 1 3.2271 -7.0435 -2.9760 44 1 5.2271 -9.6994 -3.2468 45 1 -0.4618 -6.4733 -3.1153 46 1 0.2345 -6.3457 -4.7485 47 1 0.9949 -7.4053 -3.5371 48 1 2.1140 -6.4492 -1.5681 49 1 0.7529 -5.3792 -1.1496 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036217629.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:38 Heat of formation + Delta-G solvation = 89.005935 kcal Electronic energy + Delta-G solvation = -30596.760205 eV Core-core repulsion = 26596.865992 eV Total energy + Delta-G solvation = -3999.894212 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.28694 -40.42343 -38.11414 -36.42552 -35.49226 -34.59224 -33.05117 -31.66322 -31.57038 -29.60931 -29.30623 -27.55798 -26.33147 -25.16646 -24.57445 -23.66198 -23.29319 -21.88141 -21.06880 -20.10491 -18.58142 -18.11160 -17.48119 -17.41684 -16.47024 -16.10431 -15.73413 -15.42517 -14.93256 -14.76332 -14.48490 -14.15343 -13.94046 -13.67458 -13.58532 -13.43460 -13.30248 -12.83525 -12.66208 -12.54649 -12.41751 -12.28216 -11.97544 -11.75186 -11.69072 -11.58457 -11.50562 -11.44272 -11.33319 -11.09071 -11.01934 -10.95447 -10.69666 -10.66762 -10.29972 -10.16579 -10.01333 -9.87850 -9.69902 -9.06780 -8.56758 -7.12140 -5.91026 -3.20604 1.08171 1.67030 2.18112 2.26809 2.86394 3.32977 3.39297 3.41241 3.64002 3.92274 4.02840 4.19859 4.46555 4.47424 4.61396 4.73849 4.87493 4.91021 5.08615 5.16957 5.26034 5.27241 5.28569 5.39407 5.40138 5.48375 5.53109 5.54011 5.58971 5.61042 5.71457 5.82916 5.86022 5.88470 5.91634 5.95111 6.04320 6.12374 6.18717 6.32744 6.37304 6.49407 6.56622 6.72307 6.81831 7.27603 7.57048 7.87139 8.26981 8.53856 9.38964 9.93824 10.28443 11.31058 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.018421 B = 0.002853 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.612900 B = 9811.407367 C =10096.468691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.011 4.011 3 C -0.143 4.143 4 C 0.201 3.799 5 N -0.302 5.302 6 N -0.076 5.076 7 N -0.084 5.084 8 N -0.292 5.292 9 C 0.092 3.908 10 C 0.500 3.500 11 O -0.532 6.532 12 N -0.589 5.589 13 C 0.107 3.893 14 C -0.151 4.151 15 C 0.178 3.822 16 H 0.053 0.947 17 N -0.719 5.719 18 C -0.242 4.242 19 H 0.070 0.930 20 C -0.009 4.009 21 N -0.931 5.931 22 Si 0.905 3.095 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.107 4.107 27 H 0.066 0.934 28 C -0.138 4.138 29 C 0.119 3.881 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.071 0.929 35 H 0.057 0.943 36 H 0.073 0.927 37 H 0.138 0.862 38 H 0.143 0.857 39 H 0.067 0.933 40 H 0.094 0.906 41 H 0.079 0.921 42 H 0.050 0.950 43 H 0.384 0.616 44 H 0.256 0.744 45 H 0.044 0.956 46 H 0.055 0.945 47 H 0.072 0.928 48 H 0.081 0.919 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.890 17.591 1.296 18.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.033 4.033 3 C -0.202 4.202 4 C -0.077 4.077 5 N -0.151 5.151 6 N -0.070 5.070 7 N -0.069 5.069 8 N -0.092 5.092 9 C -0.034 4.034 10 C 0.284 3.716 11 O -0.409 6.409 12 N -0.321 5.321 13 C -0.015 4.015 14 C -0.192 4.192 15 C 0.067 3.933 16 H 0.071 0.929 17 N -0.361 5.361 18 C -0.373 4.373 19 H 0.088 0.912 20 C -0.206 4.206 21 N -0.579 5.579 22 Si 0.736 3.264 23 H -0.218 1.218 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.127 4.127 27 H 0.085 0.915 28 C -0.196 4.196 29 C -0.002 4.002 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.156 0.844 38 H 0.161 0.839 39 H 0.085 0.915 40 H 0.112 0.888 41 H 0.097 0.903 42 H 0.069 0.931 43 H 0.219 0.781 44 H 0.066 0.934 45 H 0.063 0.937 46 H 0.074 0.926 47 H 0.091 0.909 48 H 0.099 0.901 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.199 17.263 2.920 18.264 hybrid contribution 0.953 -0.824 -1.495 1.955 sum -4.246 16.439 1.425 17.038 Atomic orbital electron populations 1.21821 0.91739 1.03286 1.03304 1.19787 0.97889 0.95985 0.89610 1.21849 1.01233 0.93418 1.03658 1.26051 0.94752 0.88934 0.97949 1.74926 1.19916 1.21914 0.98335 1.78588 1.07023 0.98907 1.22453 1.78902 1.20164 1.20630 0.87253 1.47912 1.34491 1.19925 1.06894 1.22104 0.99489 0.95805 0.85966 1.20126 0.87175 0.82843 0.81416 1.90784 1.26405 1.70844 1.52884 1.48081 1.21951 1.33016 1.29097 1.21809 0.84858 1.02494 0.92342 1.22476 1.02339 0.99673 0.94713 1.20214 0.89101 0.87038 0.96905 0.92866 1.42486 1.48676 1.22260 1.22718 1.19192 1.15537 1.03928 0.98657 0.91196 1.24718 1.00582 0.97787 0.97483 1.69637 1.45531 1.17351 1.25342 0.86240 0.81221 0.78078 0.80890 1.21760 1.21833 1.20809 1.21705 0.97596 0.99161 0.94270 0.91532 1.21671 0.98205 0.99162 1.00563 1.21749 0.92972 0.90132 0.95393 0.91105 0.90907 0.91852 0.89150 0.90961 0.92368 0.90764 0.84446 0.83929 0.91481 0.88806 0.90267 0.93149 0.78095 0.93394 0.93699 0.92626 0.90938 0.90121 0.89614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 9.18 37.16 0.34 -0.85 16 2 C -0.01 -0.09 3.26 -91.77 -0.30 -0.39 16 3 C -0.14 -0.91 9.18 37.15 0.34 -0.57 16 4 C 0.20 2.46 6.64 -155.43 -1.03 1.43 16 5 N -0.30 -4.50 12.36 32.70 0.40 -4.09 16 6 N -0.08 -1.26 13.43 60.35 0.81 -0.45 16 7 N -0.08 -1.32 13.29 60.35 0.80 -0.52 16 8 N -0.29 -3.73 2.83 -59.44 -0.17 -3.90 16 9 C 0.09 0.89 4.91 -5.19 -0.03 0.86 16 10 C 0.50 6.61 7.77 -10.99 -0.09 6.53 16 11 O -0.53 -9.17 15.84 5.56 0.09 -9.08 16 12 N -0.59 -7.72 2.98 -173.05 -0.52 -8.23 16 13 C 0.11 1.30 6.06 -3.93 -0.02 1.28 16 14 C -0.15 -1.97 5.76 -26.84 -0.15 -2.13 16 15 C 0.18 2.86 2.53 -67.89 -0.17 2.69 16 16 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 17 N -0.72 -14.97 3.64 -53.38 -0.19 -15.16 16 18 C -0.24 -5.86 9.93 -15.06 -0.15 -6.01 16 19 H 0.07 1.66 7.83 -52.49 -0.41 1.25 16 20 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 21 N -0.93 -25.78 13.06 55.49 0.72 -25.06 16 22 Si 0.90 20.75 29.55 -169.99 -5.02 15.73 16 23 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 C -0.11 -1.51 2.67 -90.51 -0.24 -1.75 16 27 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 28 C -0.14 -2.00 9.06 37.16 0.34 -1.66 16 29 C 0.12 1.76 5.42 -3.73 -0.02 1.74 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.09 0.59 6.85 -51.93 -0.36 0.23 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.14 0.77 6.67 -51.93 -0.35 0.43 16 38 H 0.14 1.12 7.96 -51.92 -0.41 0.71 16 39 H 0.07 0.55 5.93 -51.93 -0.31 0.24 16 40 H 0.09 1.44 7.74 -51.93 -0.40 1.04 16 41 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 42 H 0.05 0.54 8.14 -51.92 -0.42 0.12 16 43 H 0.38 8.68 5.92 -40.82 -0.24 8.44 16 44 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 45 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 46 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.07 1.24 7.53 -51.93 -0.39 0.85 16 48 H 0.08 1.36 6.64 -51.93 -0.34 1.01 16 49 H 0.09 1.31 7.00 -51.93 -0.36 0.94 16 LS Contribution 392.19 15.07 5.91 5.91 Total: -1.00 -32.09 392.19 -6.23 -38.31 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -7.78 Total: 5.74 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -1.28 Total: 0.81 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: 1.86 Total: -57.42 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.09 Total: -9.08 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.09 -6.23 -38.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036217629.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.318 kcal (2) G-P(sol) polarization free energy of solvation -32.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds