Wall clock time and date at job start Tue Mar 31 2020 21:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47664 * 2 1 4 4 C 1.50696 * 109.46917 * 120.00581 * 2 1 3 5 5 N 1.31076 * 126.65921 * 300.01737 * 4 2 1 6 6 N 1.28844 * 107.99078 * 179.97438 * 5 4 2 7 7 N 1.28735 * 109.39970 * 0.02562 * 6 5 4 8 8 N 1.29020 * 108.80643 * 359.97438 * 7 6 5 9 9 C 1.46499 * 126.43911 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.47489 * 89.97029 * 9 8 7 11 11 O 1.21281 * 119.99963 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00232 * 179.97438 * 10 9 8 13 13 C 1.46929 * 120.63274 * 359.72687 * 12 10 9 14 14 C 1.52760 * 109.01122 * 233.58348 * 13 12 10 15 15 C 1.53037 * 109.38183 * 305.58726 * 14 13 12 16 16 H 1.08998 * 109.46046 * 181.26099 * 15 14 13 17 17 N 1.46504 * 109.45921 * 301.21657 * 15 14 13 18 18 C 1.36929 * 120.00029 * 275.07217 * 17 15 14 19 19 H 1.07999 * 120.00292 * 359.97438 * 18 17 15 20 20 C 1.38819 * 120.00104 * 180.02562 * 18 17 15 21 21 N 1.31616 * 119.99846 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00003 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47296 * 89.99910 * 22 20 18 24 24 H 1.48508 * 109.47108 * 209.99698 * 22 20 18 25 25 H 1.48496 * 109.47633 * 329.99914 * 22 20 18 26 26 C 1.53042 * 109.54061 * 61.23915 * 15 14 13 27 27 H 1.09001 * 109.49719 * 58.58718 * 26 15 14 28 28 C 1.53003 * 109.49968 * 178.68426 * 26 15 14 29 29 C 1.46927 * 120.63082 * 180.02562 * 12 10 9 30 30 H 1.08997 * 109.46788 * 299.99943 * 1 2 3 31 31 H 1.09002 * 109.46627 * 59.99727 * 1 2 3 32 32 H 1.08998 * 109.47709 * 180.02562 * 1 2 3 33 33 H 1.09007 * 109.46799 * 240.00046 * 2 1 3 34 34 H 1.09007 * 109.46518 * 59.99877 * 3 2 1 35 35 H 1.08995 * 109.47090 * 179.97438 * 3 2 1 36 36 H 1.08999 * 109.47109 * 300.00584 * 3 2 1 37 37 H 1.09000 * 109.47699 * 209.97736 * 9 8 7 38 38 H 1.09011 * 109.47015 * 329.97341 * 9 8 7 39 39 H 1.09004 * 109.58284 * 353.41783 * 13 12 10 40 40 H 1.08996 * 109.58784 * 113.83554 * 13 12 10 41 41 H 1.08995 * 109.56826 * 185.54779 * 14 13 12 42 42 H 1.09009 * 109.38660 * 65.51138 * 14 13 12 43 43 H 0.97001 * 119.99855 * 95.06903 * 17 15 14 44 44 H 0.96994 * 119.99905 * 179.97438 * 21 20 18 45 45 H 1.09000 * 109.47123 * 179.83783 * 28 26 15 46 46 H 1.08997 * 109.47014 * 299.84036 * 28 26 15 47 47 H 1.09006 * 109.46798 * 59.83548 * 28 26 15 48 48 H 1.08997 * 109.58819 * 246.15549 * 29 12 10 49 49 H 1.08994 * 109.58396 * 6.44261 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7972 -0.3788 2.4765 6 7 2.3981 -1.2294 3.2349 7 7 3.0109 -2.0950 2.5051 8 7 2.8092 -1.8091 1.2632 9 6 3.3282 -2.5427 0.1061 10 6 2.3463 -3.6149 -0.2906 11 8 1.3144 -3.7524 0.3316 12 7 2.6144 -4.4202 -1.3375 13 6 3.8570 -4.2612 -2.1054 14 6 3.5113 -4.1109 -3.5858 15 6 2.6458 -5.2931 -4.0278 16 1 2.4170 -5.1987 -5.0893 17 7 3.3721 -6.5438 -3.7946 18 6 4.2557 -7.0074 -4.7323 19 1 4.4169 -6.4513 -5.6440 20 6 4.9436 -8.1929 -4.5116 21 7 4.7468 -8.8709 -3.4009 22 14 6.1484 -8.8257 -5.7911 23 1 7.5005 -8.2789 -5.5112 24 1 6.1936 -10.3091 -5.7376 25 1 5.7093 -8.3922 -7.1418 26 6 1.3432 -5.3025 -3.2244 27 1 0.8142 -4.3619 -3.3780 28 6 0.4645 -6.4653 -3.6898 29 6 1.6667 -5.4696 -1.7367 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5139 -0.8901 34 1 1.6768 1.9562 0.8901 35 1 3.1301 1.4423 0.0005 36 1 1.6768 1.9563 -0.8899 37 1 3.4704 -1.8540 -0.7268 38 1 4.2824 -3.0017 0.3650 39 1 4.3867 -3.3721 -1.7632 40 1 4.4868 -5.1400 -1.9674 41 1 4.4283 -4.0911 -4.1746 42 1 2.9621 -3.1814 -3.7365 43 1 3.2271 -7.0435 -2.9760 44 1 5.2271 -9.6994 -3.2468 45 1 -0.4618 -6.4733 -3.1153 46 1 0.2345 -6.3457 -4.7485 47 1 0.9949 -7.4053 -3.5371 48 1 2.1140 -6.4492 -1.5681 49 1 0.7529 -5.3792 -1.1496 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036217629.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:37 Heat of formation + Delta-G solvation = 67.861943 kcal Electronic energy + Delta-G solvation = -30597.677077 eV Core-core repulsion = 26596.865992 eV Total energy + Delta-G solvation = -4000.811085 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -45.30467 -41.52737 -39.32232 -37.15905 -36.46249 -35.97046 -34.53310 -33.01187 -32.54357 -30.96656 -30.45629 -28.09424 -27.51685 -26.47711 -25.47743 -25.28934 -24.31403 -23.06001 -21.88548 -21.12481 -19.80489 -19.26368 -19.00820 -18.46484 -17.54479 -17.03450 -16.81306 -16.38443 -16.35779 -15.90415 -15.61070 -15.51237 -15.02894 -14.83025 -14.61665 -14.35217 -14.23214 -14.18072 -13.76644 -13.58928 -13.26489 -13.07496 -12.98193 -12.95046 -12.85633 -12.73035 -12.65160 -12.49400 -12.36049 -12.28823 -12.27370 -12.10284 -11.97434 -11.89241 -11.88434 -11.56889 -11.21038 -11.13552 -10.95671 -10.78983 -9.72665 -8.89750 -7.87149 -5.12589 0.08861 0.80681 1.12721 1.26544 1.50765 1.52623 1.59284 1.84509 2.61619 2.87696 3.08001 3.13322 3.47907 3.55967 3.79059 3.85562 3.89902 4.03161 4.04275 4.06647 4.11466 4.18220 4.29923 4.37991 4.40494 4.51419 4.62763 4.68874 4.72286 4.79659 4.83568 4.85546 4.91980 4.93250 4.99667 5.02909 5.12599 5.16651 5.21813 5.29961 5.31079 5.35430 5.37487 5.50326 5.62525 5.64633 6.24406 6.35087 6.83622 7.43023 7.47902 8.20736 8.41897 9.36106 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.018421 B = 0.002853 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.612900 B = 9811.407367 C =10096.468691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.012 4.012 3 C -0.139 4.139 4 C 0.210 3.790 5 N -0.328 5.328 6 N -0.106 5.106 7 N -0.108 5.108 8 N -0.291 5.291 9 C 0.088 3.912 10 C 0.502 3.498 11 O -0.577 6.577 12 N -0.585 5.585 13 C 0.109 3.891 14 C -0.143 4.143 15 C 0.169 3.831 16 H 0.049 0.951 17 N -0.727 5.727 18 C -0.221 4.221 19 H 0.078 0.922 20 C -0.074 4.074 21 N -0.970 5.970 22 Si 0.959 3.041 23 H -0.290 1.290 24 H -0.308 1.308 25 H -0.271 1.271 26 C -0.095 4.095 27 H 0.094 0.906 28 C -0.135 4.135 29 C 0.124 3.876 30 H 0.057 0.943 31 H 0.103 0.897 32 H 0.038 0.962 33 H 0.120 0.880 34 H 0.056 0.944 35 H 0.064 0.936 36 H 0.101 0.899 37 H 0.192 0.808 38 H 0.165 0.835 39 H 0.120 0.880 40 H 0.057 0.943 41 H 0.073 0.927 42 H 0.090 0.910 43 H 0.372 0.628 44 H 0.246 0.754 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.036 0.964 48 H 0.049 0.951 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.572 20.894 -0.928 21.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.034 4.034 3 C -0.197 4.197 4 C -0.068 4.068 5 N -0.177 5.177 6 N -0.100 5.100 7 N -0.094 5.094 8 N -0.092 5.092 9 C -0.035 4.035 10 C 0.289 3.711 11 O -0.457 6.457 12 N -0.316 5.316 13 C -0.013 4.013 14 C -0.183 4.183 15 C 0.060 3.940 16 H 0.067 0.933 17 N -0.368 5.368 18 C -0.353 4.353 19 H 0.096 0.904 20 C -0.266 4.266 21 N -0.622 5.622 22 Si 0.791 3.209 23 H -0.217 1.217 24 H -0.235 1.235 25 H -0.196 1.196 26 C -0.115 4.115 27 H 0.112 0.888 28 C -0.193 4.193 29 C 0.002 3.998 30 H 0.076 0.924 31 H 0.121 0.879 32 H 0.057 0.943 33 H 0.138 0.862 34 H 0.075 0.925 35 H 0.083 0.917 36 H 0.120 0.880 37 H 0.209 0.791 38 H 0.182 0.818 39 H 0.138 0.862 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.108 0.892 43 H 0.206 0.794 44 H 0.054 0.946 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.056 0.944 48 H 0.068 0.932 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -4.879 20.624 0.652 21.203 hybrid contribution 0.734 -1.800 -0.856 2.124 sum -4.145 18.824 -0.204 19.276 Atomic orbital electron populations 1.21815 0.92007 1.01885 1.04209 1.20146 0.97564 0.97054 0.88605 1.21852 1.01633 0.91961 1.04256 1.26840 0.93213 0.88327 0.98383 1.74849 1.20699 1.22421 0.99710 1.78550 1.08056 0.99751 1.23619 1.78812 1.20867 1.20982 0.88691 1.48109 1.34372 1.20064 1.06645 1.22538 0.98581 0.95864 0.86566 1.20670 0.87074 0.83042 0.80341 1.90781 1.28653 1.72181 1.54064 1.48054 1.21833 1.32405 1.29330 1.21860 0.84074 1.03289 0.92047 1.22337 1.01695 0.99451 0.94818 1.20505 0.90086 0.86242 0.97135 0.93326 1.42636 1.48561 1.23999 1.21603 1.19559 1.14046 1.02903 0.98783 0.90406 1.25348 1.03163 0.98924 0.99157 1.69790 1.47315 1.17702 1.27356 0.85339 0.79570 0.76450 0.79577 1.21740 1.23523 1.19624 1.21617 0.96687 1.00039 0.93143 0.88793 1.21621 0.98630 0.97742 1.01271 1.21513 0.92910 0.89518 0.95899 0.92404 0.87875 0.94302 0.86184 0.92525 0.91706 0.88040 0.79104 0.81751 0.86238 0.92466 0.90868 0.89196 0.79443 0.94551 0.92104 0.92030 0.94445 0.93232 0.90289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.18 71.98 0.66 -1.33 16 2 C -0.01 -0.15 3.26 -11.54 -0.04 -0.19 16 3 C -0.14 -1.22 9.18 71.98 0.66 -0.56 16 4 C 0.21 4.69 6.64 138.13 0.92 5.61 16 5 N -0.33 -9.62 12.36 -50.45 -0.62 -10.25 16 6 N -0.11 -3.55 13.43 37.01 0.50 -3.05 16 7 N -0.11 -3.32 13.29 37.02 0.49 -2.82 16 8 N -0.29 -6.78 2.83 -341.97 -0.97 -7.75 16 9 C 0.09 1.33 4.91 85.63 0.42 1.76 16 10 C 0.50 11.97 7.77 87.66 0.68 12.65 16 11 O -0.58 -19.31 15.84 -3.03 -0.05 -19.36 16 12 N -0.59 -13.92 2.98 -819.80 -2.44 -16.36 16 13 C 0.11 2.27 6.06 86.22 0.52 2.79 16 14 C -0.14 -3.14 5.76 30.53 0.18 -2.96 16 15 C 0.17 5.06 2.53 45.02 0.11 5.17 16 16 H 0.05 1.52 8.08 -2.39 -0.02 1.50 16 17 N -0.73 -30.17 3.64 -322.81 -1.18 -31.34 16 18 C -0.22 -10.60 9.93 84.04 0.83 -9.76 16 19 H 0.08 3.56 7.83 -2.91 -0.02 3.54 16 20 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 21 N -0.97 -55.53 13.06 21.65 0.28 -55.25 16 22 Si 0.96 43.06 29.55 68.60 2.03 45.09 16 23 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 24 H -0.31 -14.48 7.11 99.48 0.71 -13.77 16 25 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 26 C -0.10 -2.50 2.67 -10.72 -0.03 -2.53 16 27 H 0.09 2.03 8.14 -2.39 -0.02 2.02 16 28 C -0.13 -3.81 9.06 71.98 0.65 -3.16 16 29 C 0.12 3.60 5.42 86.35 0.47 4.07 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.12 0.83 6.85 -2.38 -0.02 0.81 16 34 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 35 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 37 H 0.19 0.79 6.67 -2.39 -0.02 0.77 16 38 H 0.17 1.86 7.96 -2.38 -0.02 1.85 16 39 H 0.12 1.25 5.93 -2.38 -0.01 1.23 16 40 H 0.06 1.68 7.74 -2.39 -0.02 1.66 16 41 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 43 H 0.37 17.35 5.92 -92.71 -0.55 16.80 16 44 H 0.25 14.00 8.31 -92.71 -0.77 13.23 16 45 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.04 1.31 7.53 -2.38 -0.02 1.30 16 48 H 0.05 1.75 6.64 -2.39 -0.02 1.73 16 49 H 0.08 2.40 7.00 -2.39 -0.02 2.38 16 Total: -1.00 -75.59 392.19 4.96 -70.63 By element: Atomic # 1 Polarization: 21.91 SS G_CDS: 0.41 Total: 22.32 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 6.51 Total: 8.15 kcal Atomic # 7 Polarization: -122.88 SS G_CDS: -3.94 Total: -126.82 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.05 Total: -19.36 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -75.59 4.96 -70.63 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036217629.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.492 kcal (2) G-P(sol) polarization free energy of solvation -75.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds