Wall clock time and date at job start Tue Mar 31 2020 21:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47376 * 2 1 4 4 C 1.50697 * 109.47172 * 120.00083 * 2 1 3 5 5 N 1.31071 * 126.66044 * 299.95610 * 4 2 1 6 6 N 1.28848 * 107.99041 * 180.02562 * 5 4 2 7 7 N 1.28738 * 109.39435 * 359.73070 * 6 5 4 8 8 N 1.29009 * 108.81165 * 0.44148 * 7 6 5 9 9 C 1.46505 * 126.43916 * 179.83314 * 8 7 6 10 10 C 1.50702 * 109.46699 * 269.68819 * 9 8 7 11 11 O 1.21280 * 120.00608 * 359.97438 * 10 9 8 12 12 N 1.34784 * 119.99526 * 179.97438 * 10 9 8 13 13 C 1.46919 * 120.63188 * 359.97438 * 12 10 9 14 14 C 1.53195 * 108.89273 * 233.51696 * 13 12 10 15 15 C 1.53070 * 109.29524 * 305.57804 * 14 13 12 16 16 H 1.09007 * 109.35101 * 301.12962 * 15 14 13 17 17 N 1.46499 * 109.45427 * 181.24460 * 15 14 13 18 18 C 1.36928 * 120.00250 * 84.79108 * 17 15 14 19 19 H 1.08000 * 120.00193 * 359.97438 * 18 17 15 20 20 C 1.38812 * 120.00515 * 180.02562 * 18 17 15 21 21 N 1.31626 * 119.99431 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00596 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47181 * 89.99406 * 22 20 18 24 24 H 1.48496 * 109.47380 * 209.99676 * 22 20 18 25 25 H 1.48503 * 109.46510 * 329.99402 * 22 20 18 26 26 C 1.53039 * 109.65812 * 61.15209 * 15 14 13 27 27 H 1.09001 * 109.49731 * 58.65147 * 26 15 14 28 28 C 1.53005 * 109.49929 * 178.74923 * 26 15 14 29 29 C 1.46928 * 120.62829 * 179.97438 * 12 10 9 30 30 H 1.09003 * 109.46562 * 300.00120 * 1 2 3 31 31 H 1.08999 * 109.46888 * 59.99854 * 1 2 3 32 32 H 1.08994 * 109.47086 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47304 * 239.99849 * 2 1 3 34 34 H 1.08998 * 109.47549 * 180.02562 * 3 2 1 35 35 H 1.09008 * 109.47056 * 299.99981 * 3 2 1 36 36 H 1.09004 * 109.47027 * 59.99680 * 3 2 1 37 37 H 1.08996 * 109.47245 * 149.69026 * 9 8 7 38 38 H 1.08994 * 109.47051 * 29.68572 * 9 8 7 39 39 H 1.09002 * 109.58751 * 353.37646 * 13 12 10 40 40 H 1.08996 * 109.58750 * 113.65831 * 13 12 10 41 41 H 1.08997 * 109.50046 * 65.38734 * 14 13 12 42 42 H 1.09003 * 109.49733 * 185.48713 * 14 13 12 43 43 H 0.97007 * 119.99658 * 264.78640 * 17 15 14 44 44 H 0.97006 * 119.99397 * 180.02562 * 21 20 18 45 45 H 1.08996 * 109.47522 * 179.84157 * 28 26 15 46 46 H 1.09006 * 109.47027 * 299.84067 * 28 26 15 47 47 H 1.08998 * 109.46892 * 59.83549 * 28 26 15 48 48 H 1.08998 * 109.58787 * 246.20220 * 29 12 10 49 49 H 1.08999 * 109.58470 * 6.62573 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7982 -0.3779 2.4765 6 7 2.3998 -1.2282 3.2350 7 7 3.0068 -2.0977 2.5051 8 7 2.8090 -1.8093 1.2633 9 6 3.3271 -2.5435 0.1062 10 6 4.6650 -1.9751 -0.2913 11 8 5.1389 -1.0478 0.3303 12 7 5.3350 -2.4974 -1.3377 13 6 4.7742 -3.6212 -2.1001 14 6 5.8094 -4.7491 -2.1550 15 6 7.1252 -4.2013 -2.7134 16 1 6.9525 -3.7918 -3.7088 17 7 8.1088 -5.2838 -2.7953 18 6 8.1332 -6.1053 -3.8905 19 1 7.4271 -5.9555 -4.6938 20 6 9.0649 -7.1315 -3.9679 21 7 9.9252 -7.3144 -2.9886 22 14 9.0978 -8.2526 -5.4616 23 1 10.0080 -7.6835 -6.4878 24 1 9.5832 -9.5975 -5.0606 25 1 7.7282 -8.3680 -6.0240 26 6 7.6555 -3.0990 -1.7937 27 1 7.8050 -3.5017 -0.7919 28 6 8.9861 -2.5756 -2.3384 29 6 6.6401 -1.9537 -1.7377 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6767 1.9563 0.8900 37 1 2.6301 -2.4483 -0.7264 38 1 3.4420 -3.5959 0.3654 39 1 3.8689 -3.9796 -1.6101 40 1 4.5366 -3.2937 -3.1122 41 1 5.9768 -5.1386 -1.1509 42 1 5.4429 -5.5482 -2.7994 43 1 8.7428 -5.4186 -2.0736 44 1 10.5765 -8.0313 -3.0429 45 1 9.3620 -1.7887 -1.6846 46 1 9.7084 -3.3911 -2.3779 47 1 8.8358 -2.1745 -3.3407 48 1 6.5573 -1.4907 -2.7209 49 1 6.9659 -1.2120 -1.0085 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036217635.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:42 Heat of formation + Delta-G solvation = 87.208126 kcal Electronic energy + Delta-G solvation = -30029.535435 eV Core-core repulsion = 26029.563264 eV Total energy + Delta-G solvation = -3999.972171 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.36670 -40.52669 -38.06333 -36.50712 -35.59190 -34.91044 -33.08176 -31.71706 -31.63681 -29.84767 -29.28940 -27.63307 -26.44195 -25.17492 -24.65541 -23.54020 -22.93718 -21.86211 -21.12491 -20.25121 -19.39347 -18.25090 -17.60838 -17.20948 -16.60667 -16.23058 -15.83609 -15.52891 -15.08430 -14.96218 -14.36314 -14.03244 -13.91640 -13.83913 -13.66670 -13.48752 -13.32850 -12.95438 -12.62238 -12.60294 -12.45246 -12.33277 -12.06528 -11.93815 -11.78980 -11.76740 -11.58748 -11.51587 -11.32562 -11.16494 -11.05682 -10.94747 -10.80866 -10.57475 -10.29545 -10.26742 -10.03809 -9.87334 -9.76351 -9.02755 -8.82592 -7.08661 -5.87634 -3.17335 0.99683 1.57215 2.09576 2.11752 2.68751 3.34872 3.39878 3.42459 3.55558 3.82337 3.86047 4.09267 4.35619 4.47623 4.53339 4.65741 4.71263 4.82009 5.02997 5.06645 5.10640 5.18709 5.20725 5.31574 5.33001 5.35580 5.40813 5.45562 5.52240 5.53479 5.58476 5.73100 5.75989 5.83683 5.87506 5.90732 5.97053 6.11325 6.15261 6.28561 6.31349 6.42867 6.63543 6.77679 6.88035 7.06185 7.57883 7.69961 8.30076 8.46459 9.41749 9.97948 10.32342 11.34563 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.021366 B = 0.002431 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.185407 B =11516.740202 C =11607.519344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.011 4.011 3 C -0.144 4.144 4 C 0.201 3.799 5 N -0.301 5.301 6 N -0.074 5.074 7 N -0.083 5.083 8 N -0.293 5.293 9 C 0.092 3.908 10 C 0.502 3.498 11 O -0.527 6.527 12 N -0.595 5.595 13 C 0.101 3.899 14 C -0.155 4.155 15 C 0.184 3.816 16 H 0.049 0.951 17 N -0.720 5.720 18 C -0.242 4.242 19 H 0.070 0.930 20 C -0.011 4.011 21 N -0.930 5.930 22 Si 0.906 3.094 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.111 4.111 27 H 0.070 0.930 28 C -0.136 4.136 29 C 0.121 3.879 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.057 0.943 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.138 0.862 38 H 0.144 0.856 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.062 0.938 42 H 0.080 0.920 43 H 0.384 0.616 44 H 0.256 0.744 45 H 0.043 0.957 46 H 0.075 0.925 47 H 0.051 0.949 48 H 0.072 0.928 49 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.748 13.708 0.689 22.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.032 4.032 3 C -0.202 4.202 4 C -0.077 4.077 5 N -0.150 5.150 6 N -0.068 5.068 7 N -0.069 5.069 8 N -0.094 5.094 9 C -0.034 4.034 10 C 0.286 3.714 11 O -0.403 6.403 12 N -0.328 5.328 13 C -0.022 4.022 14 C -0.196 4.196 15 C 0.074 3.926 16 H 0.067 0.933 17 N -0.360 5.360 18 C -0.373 4.373 19 H 0.088 0.912 20 C -0.207 4.207 21 N -0.578 5.578 22 Si 0.737 3.263 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.131 4.131 27 H 0.089 0.911 28 C -0.194 4.194 29 C -0.001 4.001 30 H 0.091 0.909 31 H 0.092 0.908 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.156 0.844 38 H 0.162 0.838 39 H 0.092 0.908 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.099 0.901 43 H 0.219 0.781 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.094 0.906 47 H 0.071 0.929 48 H 0.090 0.910 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -17.366 13.915 2.294 22.371 hybrid contribution 0.426 -1.119 -1.585 1.986 sum -16.940 12.796 0.709 21.242 Atomic orbital electron populations 1.21854 0.91907 1.02725 1.03712 1.19788 0.97325 0.96581 0.89541 1.21828 1.01982 0.93013 1.03375 1.26067 0.94917 0.88780 0.97985 1.74936 1.20673 1.21036 0.98322 1.78609 1.06937 0.98856 1.22397 1.78917 1.18963 1.21781 0.87200 1.47906 1.33779 1.20805 1.06890 1.22091 0.96357 0.98795 0.86149 1.20172 0.86269 0.83961 0.80973 1.90797 1.68423 1.28642 1.52468 1.48125 1.20763 1.34020 1.29916 1.22021 0.97000 0.86940 0.96232 1.22744 0.97237 0.96835 1.02758 1.20181 0.88478 0.88286 0.95682 0.93307 1.42402 1.37305 1.33439 1.22848 1.19181 1.13497 1.07638 0.96998 0.91208 1.24749 0.98466 0.99458 0.98053 1.69661 1.21776 1.34100 1.32263 0.86224 0.77498 0.80303 0.82315 1.21704 1.21794 1.20783 1.21752 0.94997 0.95514 1.00812 0.91116 1.21658 0.96678 1.01171 0.99897 1.21809 0.80873 0.96660 1.00750 0.90911 0.90754 0.92345 0.89205 0.91871 0.90900 0.91040 0.84413 0.83802 0.90783 0.90512 0.91943 0.90098 0.78150 0.93411 0.93756 0.90589 0.92949 0.90991 0.89218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.78 9.18 37.16 0.34 -0.44 16 2 C -0.01 -0.08 3.26 -91.77 -0.30 -0.37 16 3 C -0.14 -1.05 9.18 37.16 0.34 -0.71 16 4 C 0.20 2.26 6.64 -155.43 -1.03 1.22 16 5 N -0.30 -4.25 12.36 32.70 0.40 -3.85 16 6 N -0.07 -1.18 13.43 60.35 0.81 -0.37 16 7 N -0.08 -1.24 13.29 60.35 0.80 -0.44 16 8 N -0.29 -3.45 2.83 -59.44 -0.17 -3.62 16 9 C 0.09 0.75 4.91 -5.19 -0.03 0.73 16 10 C 0.50 5.81 7.77 -10.98 -0.09 5.72 16 11 O -0.53 -8.34 15.84 5.56 0.09 -8.26 16 12 N -0.60 -6.46 2.97 -172.79 -0.51 -6.98 16 13 C 0.10 0.92 6.34 -3.71 -0.02 0.90 16 14 C -0.15 -2.13 5.67 -26.59 -0.15 -2.28 16 15 C 0.18 3.06 2.19 -67.87 -0.15 2.92 16 16 H 0.05 0.83 8.08 -51.93 -0.42 0.41 16 17 N -0.72 -16.05 4.41 -53.37 -0.24 -16.28 16 18 C -0.24 -6.11 9.93 -15.06 -0.15 -6.26 16 19 H 0.07 1.70 7.83 -52.49 -0.41 1.29 16 20 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 21 N -0.93 -26.71 13.06 55.49 0.72 -25.98 16 22 Si 0.91 21.16 29.55 -169.99 -5.02 16.13 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 C -0.11 -1.62 2.46 -90.52 -0.22 -1.85 16 27 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 28 C -0.14 -2.03 9.02 37.16 0.34 -1.70 16 29 C 0.12 1.48 5.71 -3.73 -0.02 1.46 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.09 0.46 6.85 -51.93 -0.36 0.10 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.14 0.53 6.93 -51.93 -0.36 0.17 16 38 H 0.14 0.95 7.69 -51.93 -0.40 0.55 16 39 H 0.07 0.44 5.93 -51.93 -0.31 0.13 16 40 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.38 9.43 7.50 -40.82 -0.31 9.12 16 44 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.08 1.36 7.36 -51.93 -0.38 0.98 16 47 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 49 H 0.09 1.20 7.00 -51.93 -0.36 0.84 16 LS Contribution 396.17 15.07 5.97 5.97 Total: -1.00 -33.82 396.17 -6.32 -40.14 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -7.94 Total: 4.58 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -1.24 Total: -1.05 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: 1.82 Total: -57.52 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: 0.09 Total: -8.26 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.82 -6.32 -40.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036217635.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.349 kcal (2) G-P(sol) polarization free energy of solvation -33.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.141 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds