Wall clock time and date at job start Tue Mar 31 2020 21:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47376 * 2 1 4 4 C 1.50697 * 109.47172 * 120.00083 * 2 1 3 5 5 N 1.31071 * 126.66044 * 299.95610 * 4 2 1 6 6 N 1.28848 * 107.99041 * 180.02562 * 5 4 2 7 7 N 1.28738 * 109.39435 * 359.73070 * 6 5 4 8 8 N 1.29009 * 108.81165 * 0.44148 * 7 6 5 9 9 C 1.46505 * 126.43916 * 179.83314 * 8 7 6 10 10 C 1.50702 * 109.46699 * 269.68819 * 9 8 7 11 11 O 1.21280 * 120.00608 * 359.97438 * 10 9 8 12 12 N 1.34784 * 119.99526 * 179.97438 * 10 9 8 13 13 C 1.46919 * 120.63188 * 359.97438 * 12 10 9 14 14 C 1.53195 * 108.89273 * 233.51696 * 13 12 10 15 15 C 1.53070 * 109.29524 * 305.57804 * 14 13 12 16 16 H 1.09007 * 109.35101 * 301.12962 * 15 14 13 17 17 N 1.46499 * 109.45427 * 181.24460 * 15 14 13 18 18 C 1.36928 * 120.00250 * 84.79108 * 17 15 14 19 19 H 1.08000 * 120.00193 * 359.97438 * 18 17 15 20 20 C 1.38812 * 120.00515 * 180.02562 * 18 17 15 21 21 N 1.31626 * 119.99431 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00596 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47181 * 89.99406 * 22 20 18 24 24 H 1.48496 * 109.47380 * 209.99676 * 22 20 18 25 25 H 1.48503 * 109.46510 * 329.99402 * 22 20 18 26 26 C 1.53039 * 109.65812 * 61.15209 * 15 14 13 27 27 H 1.09001 * 109.49731 * 58.65147 * 26 15 14 28 28 C 1.53005 * 109.49929 * 178.74923 * 26 15 14 29 29 C 1.46928 * 120.62829 * 179.97438 * 12 10 9 30 30 H 1.09003 * 109.46562 * 300.00120 * 1 2 3 31 31 H 1.08999 * 109.46888 * 59.99854 * 1 2 3 32 32 H 1.08994 * 109.47086 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47304 * 239.99849 * 2 1 3 34 34 H 1.08998 * 109.47549 * 180.02562 * 3 2 1 35 35 H 1.09008 * 109.47056 * 299.99981 * 3 2 1 36 36 H 1.09004 * 109.47027 * 59.99680 * 3 2 1 37 37 H 1.08996 * 109.47245 * 149.69026 * 9 8 7 38 38 H 1.08994 * 109.47051 * 29.68572 * 9 8 7 39 39 H 1.09002 * 109.58751 * 353.37646 * 13 12 10 40 40 H 1.08996 * 109.58750 * 113.65831 * 13 12 10 41 41 H 1.08997 * 109.50046 * 65.38734 * 14 13 12 42 42 H 1.09003 * 109.49733 * 185.48713 * 14 13 12 43 43 H 0.97007 * 119.99658 * 264.78640 * 17 15 14 44 44 H 0.97006 * 119.99397 * 180.02562 * 21 20 18 45 45 H 1.08996 * 109.47522 * 179.84157 * 28 26 15 46 46 H 1.09006 * 109.47027 * 299.84067 * 28 26 15 47 47 H 1.08998 * 109.46892 * 59.83549 * 28 26 15 48 48 H 1.08998 * 109.58787 * 246.20220 * 29 12 10 49 49 H 1.08999 * 109.58470 * 6.62573 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7982 -0.3779 2.4765 6 7 2.3998 -1.2282 3.2350 7 7 3.0068 -2.0977 2.5051 8 7 2.8090 -1.8093 1.2633 9 6 3.3271 -2.5435 0.1062 10 6 4.6650 -1.9751 -0.2913 11 8 5.1389 -1.0478 0.3303 12 7 5.3350 -2.4974 -1.3377 13 6 4.7742 -3.6212 -2.1001 14 6 5.8094 -4.7491 -2.1550 15 6 7.1252 -4.2013 -2.7134 16 1 6.9525 -3.7918 -3.7088 17 7 8.1088 -5.2838 -2.7953 18 6 8.1332 -6.1053 -3.8905 19 1 7.4271 -5.9555 -4.6938 20 6 9.0649 -7.1315 -3.9679 21 7 9.9252 -7.3144 -2.9886 22 14 9.0978 -8.2526 -5.4616 23 1 10.0080 -7.6835 -6.4878 24 1 9.5832 -9.5975 -5.0606 25 1 7.7282 -8.3680 -6.0240 26 6 7.6555 -3.0990 -1.7937 27 1 7.8050 -3.5017 -0.7919 28 6 8.9861 -2.5756 -2.3384 29 6 6.6401 -1.9537 -1.7377 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.6767 1.9563 0.8900 37 1 2.6301 -2.4483 -0.7264 38 1 3.4420 -3.5959 0.3654 39 1 3.8689 -3.9796 -1.6101 40 1 4.5366 -3.2937 -3.1122 41 1 5.9768 -5.1386 -1.1509 42 1 5.4429 -5.5482 -2.7994 43 1 8.7428 -5.4186 -2.0736 44 1 10.5765 -8.0313 -3.0429 45 1 9.3620 -1.7887 -1.6846 46 1 9.7084 -3.3911 -2.3779 47 1 8.8358 -2.1745 -3.3407 48 1 6.5573 -1.4907 -2.7209 49 1 6.9659 -1.2120 -1.0085 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036217635.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:41 Heat of formation + Delta-G solvation = 63.833793 kcal Electronic energy + Delta-G solvation = -30030.549023 eV Core-core repulsion = 26029.563264 eV Total energy + Delta-G solvation = -4000.985758 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -45.30480 -41.48531 -39.22015 -37.16160 -36.47207 -36.26531 -34.53855 -33.07718 -32.54602 -31.15042 -30.38147 -28.09598 -27.53792 -26.64174 -25.47946 -24.74809 -24.09118 -23.09799 -21.87461 -21.31265 -20.45746 -19.14012 -18.97786 -18.48203 -17.58313 -17.01582 -16.74838 -16.71476 -16.35651 -15.70177 -15.59377 -15.44926 -15.08185 -14.85551 -14.68849 -14.27928 -14.18412 -14.11084 -13.74600 -13.61390 -13.22022 -13.16289 -13.07860 -12.96435 -12.86018 -12.76581 -12.68012 -12.53506 -12.43084 -12.28752 -12.27416 -12.13460 -12.03643 -11.88643 -11.85423 -11.66666 -11.21592 -11.14830 -10.97925 -10.80603 -9.80183 -8.94942 -7.89833 -5.17156 0.08986 0.81372 1.12761 1.25168 1.50253 1.50818 1.58830 1.83754 2.59337 2.87848 3.07802 3.13654 3.44415 3.57003 3.77088 3.79507 3.84406 4.00031 4.03199 4.06494 4.09405 4.18349 4.28045 4.37138 4.40938 4.49603 4.63128 4.65580 4.76419 4.77748 4.79438 4.83957 4.85557 4.92286 4.94450 4.97657 5.01153 5.12014 5.18972 5.29439 5.30493 5.37608 5.40886 5.49746 5.57216 5.64941 6.18763 6.31690 6.82987 7.38130 7.47999 8.15373 8.36803 9.33922 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.021366 B = 0.002431 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1310.185407 B =11516.740202 C =11607.519344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.011 4.011 3 C -0.142 4.142 4 C 0.210 3.790 5 N -0.329 5.329 6 N -0.107 5.107 7 N -0.108 5.108 8 N -0.292 5.292 9 C 0.086 3.914 10 C 0.503 3.497 11 O -0.576 6.576 12 N -0.592 5.592 13 C 0.107 3.893 14 C -0.148 4.148 15 C 0.178 3.822 16 H 0.054 0.946 17 N -0.734 5.734 18 C -0.225 4.225 19 H 0.083 0.917 20 C -0.080 4.080 21 N -0.973 5.973 22 Si 0.966 3.034 23 H -0.292 1.292 24 H -0.304 1.304 25 H -0.264 1.264 26 C -0.102 4.102 27 H 0.047 0.953 28 C -0.131 4.131 29 C 0.129 3.871 30 H 0.054 0.946 31 H 0.101 0.899 32 H 0.064 0.936 33 H 0.123 0.877 34 H 0.039 0.961 35 H 0.103 0.897 36 H 0.055 0.945 37 H 0.195 0.805 38 H 0.166 0.834 39 H 0.119 0.881 40 H 0.105 0.895 41 H 0.043 0.957 42 H 0.074 0.926 43 H 0.368 0.632 44 H 0.247 0.753 45 H 0.059 0.941 46 H 0.038 0.962 47 H 0.062 0.938 48 H 0.095 0.905 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.046 14.501 -2.027 25.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.033 4.033 3 C -0.200 4.200 4 C -0.068 4.068 5 N -0.178 5.178 6 N -0.101 5.101 7 N -0.094 5.094 8 N -0.092 5.092 9 C -0.038 4.038 10 C 0.289 3.711 11 O -0.455 6.455 12 N -0.323 5.323 13 C -0.015 4.015 14 C -0.189 4.189 15 C 0.069 3.931 16 H 0.072 0.928 17 N -0.373 5.373 18 C -0.357 4.357 19 H 0.100 0.900 20 C -0.272 4.272 21 N -0.625 5.625 22 Si 0.796 3.204 23 H -0.220 1.220 24 H -0.232 1.232 25 H -0.189 1.189 26 C -0.122 4.122 27 H 0.065 0.935 28 C -0.189 4.189 29 C 0.007 3.993 30 H 0.073 0.927 31 H 0.120 0.880 32 H 0.083 0.917 33 H 0.141 0.859 34 H 0.058 0.942 35 H 0.121 0.879 36 H 0.075 0.925 37 H 0.212 0.788 38 H 0.183 0.817 39 H 0.137 0.863 40 H 0.124 0.876 41 H 0.062 0.938 42 H 0.092 0.908 43 H 0.200 0.800 44 H 0.056 0.944 45 H 0.078 0.922 46 H 0.057 0.943 47 H 0.081 0.919 48 H 0.113 0.887 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -20.732 14.726 -0.457 25.433 hybrid contribution 1.456 -1.262 -0.768 2.074 sum -19.276 13.464 -1.225 23.544 Atomic orbital electron populations 1.21856 0.90347 1.03355 1.04213 1.20149 0.98465 0.96039 0.88631 1.21821 1.00412 0.93578 1.04172 1.26855 0.93486 0.88113 0.98369 1.74851 1.21601 1.21520 0.99803 1.78566 1.08096 0.99771 1.23659 1.78815 1.19520 1.22292 0.88750 1.48127 1.33382 1.21061 1.06671 1.22594 0.95492 0.99056 0.86657 1.20686 0.87180 0.83180 0.80026 1.90796 1.69879 1.31009 1.53837 1.48139 1.20086 1.34187 1.29920 1.22168 0.96536 0.84455 0.98316 1.22522 0.96808 0.98405 1.01145 1.20479 0.88698 0.87273 0.96612 0.92764 1.42638 1.38452 1.34516 1.21659 1.19609 1.12038 1.06629 0.97396 0.89954 1.25497 0.99201 1.01792 1.00688 1.69829 1.23183 1.34989 1.34496 0.85240 0.78024 0.77805 0.79319 1.21978 1.23170 1.18852 1.21615 0.95732 0.95911 0.98920 0.93451 1.21579 0.96123 1.00236 1.00983 1.21615 0.81029 0.95051 1.01651 0.92660 0.88033 0.91664 0.85913 0.94210 0.87876 0.92536 0.78802 0.81695 0.86274 0.87649 0.93766 0.90750 0.80046 0.94445 0.92229 0.94310 0.91889 0.88695 0.90454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.18 71.98 0.66 -0.35 16 2 C -0.01 -0.12 3.26 -11.54 -0.04 -0.16 16 3 C -0.14 -1.75 9.18 71.98 0.66 -1.09 16 4 C 0.21 4.31 6.64 138.13 0.92 5.23 16 5 N -0.33 -9.24 12.36 -50.45 -0.62 -9.86 16 6 N -0.11 -3.47 13.43 37.01 0.50 -2.97 16 7 N -0.11 -3.16 13.29 37.02 0.49 -2.67 16 8 N -0.29 -6.19 2.83 -341.97 -0.97 -7.16 16 9 C 0.09 1.02 4.91 85.63 0.42 1.44 16 10 C 0.50 10.04 7.77 87.66 0.68 10.72 16 11 O -0.58 -17.50 15.84 -3.03 -0.05 -17.54 16 12 N -0.59 -10.67 2.97 -818.98 -2.44 -13.10 16 13 C 0.11 1.40 6.34 86.36 0.55 1.94 16 14 C -0.15 -3.69 5.67 30.68 0.17 -3.52 16 15 C 0.18 5.66 2.19 45.03 0.10 5.76 16 16 H 0.05 1.69 8.08 -2.38 -0.02 1.67 16 17 N -0.73 -32.97 4.41 -322.77 -1.42 -34.40 16 18 C -0.22 -11.25 9.93 84.03 0.83 -10.41 16 19 H 0.08 3.85 7.83 -2.91 -0.02 3.82 16 20 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 21 N -0.97 -57.77 13.06 21.65 0.28 -57.49 16 22 Si 0.97 43.73 29.55 68.60 2.03 45.76 16 23 H -0.29 -13.18 7.11 99.48 0.71 -12.48 16 24 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 25 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 26 C -0.10 -2.92 2.46 -10.73 -0.03 -2.94 16 27 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 28 C -0.13 -3.92 9.02 71.98 0.65 -3.27 16 29 C 0.13 2.87 5.71 86.35 0.49 3.36 16 30 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.12 0.52 6.85 -2.39 -0.02 0.51 16 34 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 36 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.20 0.07 6.93 -2.39 -0.02 0.05 16 38 H 0.17 1.37 7.69 -2.39 -0.02 1.35 16 39 H 0.12 0.57 5.93 -2.39 -0.01 0.56 16 40 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 43 H 0.37 18.78 7.50 -92.70 -0.70 18.08 16 44 H 0.25 14.42 8.31 -92.70 -0.77 13.65 16 45 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.04 1.44 7.36 -2.38 -0.02 1.42 16 47 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 49 H 0.08 1.97 7.00 -2.39 -0.02 1.96 16 Total: -1.00 -80.54 396.17 4.60 -75.94 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: 0.26 Total: 20.65 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: 6.54 Total: 2.85 kcal Atomic # 7 Polarization: -123.47 SS G_CDS: -4.18 Total: -127.66 kcal Atomic # 8 Polarization: -17.50 SS G_CDS: -0.05 Total: -17.54 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -80.54 4.60 -75.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036217635.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.772 kcal (2) G-P(sol) polarization free energy of solvation -80.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds