Wall clock time and date at job start Tue Mar 31 2020 21:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47585 * 2 1 4 4 C 1.50699 * 109.47479 * 120.00195 * 2 1 3 5 5 N 1.31074 * 126.65784 * 299.97916 * 4 2 1 6 6 N 1.28840 * 107.99011 * 180.02562 * 5 4 2 7 7 N 1.28744 * 109.39557 * 359.97438 * 6 5 4 8 8 N 1.29013 * 108.81146 * 0.02562 * 7 6 5 9 9 C 1.46501 * 126.44071 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47535 * 89.96809 * 9 8 7 11 11 O 1.21276 * 119.99860 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00122 * 179.97438 * 10 9 8 13 13 C 1.46929 * 120.63024 * 0.02562 * 12 10 9 14 14 C 1.53191 * 108.77715 * 126.36405 * 13 12 10 15 15 C 1.53042 * 109.31187 * 54.63501 * 14 13 12 16 16 H 1.09000 * 109.46044 * 58.65852 * 15 14 13 17 17 N 1.46504 * 109.46113 * 178.62853 * 15 14 13 18 18 C 1.36928 * 120.00020 * 275.00027 * 17 15 14 19 19 H 1.08003 * 120.00036 * 359.97438 * 18 17 15 20 20 C 1.38812 * 119.99986 * 179.97438 * 18 17 15 21 21 N 1.31627 * 120.00025 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00168 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.46943 * 89.99871 * 22 20 18 24 24 H 1.48501 * 109.47227 * 210.00038 * 22 20 18 25 25 H 1.48502 * 109.47037 * 330.00186 * 22 20 18 26 26 C 1.53043 * 109.53749 * 298.63264 * 15 14 13 27 27 H 1.08995 * 109.50019 * 301.41226 * 26 15 14 28 28 C 1.53008 * 109.49717 * 181.34634 * 26 15 14 29 29 C 1.46921 * 120.63161 * 179.71643 * 12 10 9 30 30 H 1.09002 * 109.47067 * 59.99650 * 1 2 3 31 31 H 1.08999 * 109.47355 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47071 * 300.00490 * 1 2 3 33 33 H 1.09007 * 109.47287 * 240.00239 * 2 1 3 34 34 H 1.08993 * 109.47434 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.46747 * 300.00542 * 3 2 1 36 36 H 1.09003 * 109.46863 * 59.99378 * 3 2 1 37 37 H 1.09001 * 109.46867 * 209.97016 * 9 8 7 38 38 H 1.08995 * 109.46647 * 329.96689 * 9 8 7 39 39 H 1.08998 * 109.58510 * 246.15229 * 13 12 10 40 40 H 1.09002 * 109.58788 * 6.43576 * 13 12 10 41 41 H 1.08997 * 109.50383 * 174.58695 * 14 13 12 42 42 H 1.08999 * 109.50089 * 294.65648 * 14 13 12 43 43 H 0.97010 * 119.99812 * 95.00130 * 17 15 14 44 44 H 0.96993 * 119.99877 * 179.97438 * 21 20 18 45 45 H 1.08996 * 109.46526 * 60.00365 * 28 26 15 46 46 H 1.08995 * 109.46861 * 180.02562 * 28 26 15 47 47 H 1.09000 * 109.46893 * 300.00541 * 28 26 15 48 48 H 1.09001 * 109.59124 * 353.42823 * 29 12 10 49 49 H 1.09005 * 109.58338 * 113.85170 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7979 -0.3782 2.4765 6 7 2.3996 -1.2283 3.2349 7 7 3.0113 -2.0945 2.5050 8 7 2.8092 -1.8092 1.2632 9 6 3.3269 -2.5436 0.1061 10 6 2.3441 -3.6153 -0.2896 11 8 1.3126 -3.7519 0.3333 12 7 2.6111 -4.4212 -1.3362 13 6 3.8563 -4.2676 -2.1009 14 6 4.5733 -5.6203 -2.1527 15 6 3.6188 -6.6780 -2.7117 16 1 3.2887 -6.3796 -3.7068 17 7 4.3116 -7.9663 -2.7933 18 6 5.0752 -8.2648 -3.8900 19 1 5.1665 -7.5506 -4.6950 20 6 5.7320 -9.4853 -3.9671 21 7 6.4657 -9.7724 -5.0215 22 14 5.5747 -10.7202 -2.5744 23 1 4.4140 -11.6102 -2.8307 24 1 6.8140 -11.5343 -2.4922 25 1 5.3711 -9.9979 -1.2929 26 6 2.4044 -6.8100 -1.7898 27 1 2.7359 -7.0844 -0.7884 28 6 1.4671 -7.8912 -2.3316 29 6 1.6657 -5.4746 -1.7302 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 3.4689 -1.8553 -0.7272 38 1 4.2809 -3.0029 0.3646 39 1 3.6248 -3.9377 -3.1136 40 1 4.4956 -3.5312 -1.6139 41 1 5.4490 -5.5436 -2.7971 42 1 4.8849 -5.9057 -1.1479 43 1 4.2293 -8.6079 -2.0704 44 1 6.9250 -10.6250 -5.0751 45 1 1.9964 -8.8431 -2.3734 46 1 0.6022 -7.9845 -1.6749 47 1 1.1350 -7.6159 -3.3326 48 1 0.8611 -5.5362 -0.9974 49 1 1.2516 -5.2454 -2.7121 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036217639.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:47 Heat of formation + Delta-G solvation = 91.319695 kcal Electronic energy + Delta-G solvation = -30103.799657 eV Core-core repulsion = 26104.005777 eV Total energy + Delta-G solvation = -3999.793880 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.40114 -40.60792 -38.19660 -36.53395 -35.63257 -35.06097 -33.16372 -31.78533 -31.69174 -30.18006 -29.55174 -27.65225 -26.58334 -25.33648 -24.68612 -23.52469 -22.79265 -21.78413 -21.14746 -20.37070 -19.56560 -18.32253 -17.71420 -17.57627 -16.63990 -16.28404 -15.89591 -15.58558 -15.11921 -14.97969 -14.55900 -14.17536 -13.96067 -13.87088 -13.68795 -13.48032 -13.37200 -12.95527 -12.67804 -12.64048 -12.58009 -12.37371 -12.18314 -12.07268 -11.94623 -11.78799 -11.63485 -11.60920 -11.51930 -11.19607 -11.18714 -11.07256 -10.88675 -10.70530 -10.37016 -10.29112 -10.07353 -9.93746 -9.69892 -9.06194 -8.91074 -7.40660 -5.88894 -3.25294 0.95952 1.53482 2.04258 2.08154 2.62500 3.28780 3.31899 3.38057 3.52730 3.78660 3.80665 4.06294 4.31592 4.48391 4.51247 4.63337 4.65336 4.78876 4.85419 4.91828 4.99793 5.15880 5.18827 5.22370 5.27484 5.30826 5.38458 5.43350 5.44368 5.48154 5.50151 5.62287 5.73866 5.75891 5.79375 5.83335 5.87066 5.90380 6.03989 6.11368 6.18002 6.28403 6.51867 6.57442 6.75531 6.98941 7.63830 7.85070 8.29974 8.43033 9.07431 9.80374 9.99420 11.29085 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.021279 B = 0.002547 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.562294 B =10992.032652 C =11086.675798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.011 4.011 3 C -0.144 4.144 4 C 0.201 3.799 5 N -0.301 5.301 6 N -0.074 5.074 7 N -0.084 5.084 8 N -0.294 5.294 9 C 0.092 3.908 10 C 0.502 3.498 11 O -0.527 6.527 12 N -0.596 5.596 13 C 0.101 3.899 14 C -0.155 4.155 15 C 0.189 3.811 16 H 0.059 0.941 17 N -0.744 5.744 18 C -0.246 4.246 19 H 0.091 0.909 20 C 0.008 3.992 21 N -0.931 5.931 22 Si 0.882 3.118 23 H -0.284 1.284 24 H -0.291 1.291 25 H -0.277 1.277 26 C -0.115 4.115 27 H 0.069 0.931 28 C -0.137 4.137 29 C 0.122 3.878 30 H 0.072 0.928 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.058 0.942 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.139 0.861 38 H 0.144 0.856 39 H 0.079 0.921 40 H 0.076 0.924 41 H 0.085 0.915 42 H 0.061 0.939 43 H 0.361 0.639 44 H 0.260 0.740 45 H 0.068 0.932 46 H 0.046 0.954 47 H 0.057 0.943 48 H 0.090 0.910 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.012 20.317 5.171 22.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.033 4.033 3 C -0.202 4.202 4 C -0.077 4.077 5 N -0.149 5.149 6 N -0.068 5.068 7 N -0.069 5.069 8 N -0.094 5.094 9 C -0.034 4.034 10 C 0.287 3.713 11 O -0.403 6.403 12 N -0.329 5.329 13 C -0.022 4.022 14 C -0.196 4.196 15 C 0.079 3.921 16 H 0.077 0.923 17 N -0.386 5.386 18 C -0.376 4.376 19 H 0.108 0.892 20 C -0.189 4.189 21 N -0.579 5.579 22 Si 0.712 3.288 23 H -0.210 1.210 24 H -0.217 1.217 25 H -0.204 1.204 26 C -0.136 4.136 27 H 0.088 0.912 28 C -0.195 4.195 29 C 0.000 4.000 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.157 0.843 38 H 0.162 0.838 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.104 0.896 42 H 0.080 0.920 43 H 0.195 0.805 44 H 0.070 0.930 45 H 0.087 0.913 46 H 0.065 0.935 47 H 0.076 0.924 48 H 0.109 0.891 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -9.307 20.044 6.699 23.093 hybrid contribution 0.335 -1.275 -0.071 1.320 sum -8.973 18.769 6.628 21.834 Atomic orbital electron populations 1.21826 0.91712 1.03253 1.03404 1.19794 0.97896 0.96039 0.89521 1.21856 1.01265 0.93359 1.03734 1.26078 0.94709 0.88898 0.97995 1.74939 1.19824 1.21859 0.98323 1.78609 1.06925 0.98846 1.22398 1.78914 1.20152 1.20666 0.87205 1.47907 1.34648 1.19990 1.06877 1.22090 0.99412 0.95690 0.86206 1.20179 0.87262 0.82991 0.80907 1.90798 1.26415 1.70665 1.52406 1.48130 1.21902 1.32957 1.29943 1.22030 0.84111 0.99631 0.96410 1.22698 1.00621 0.93615 1.02664 1.20157 0.89188 0.86437 0.96305 0.92307 1.42771 1.58556 1.15090 1.22181 1.19016 1.21158 1.01095 0.96305 0.89169 1.24664 0.99396 0.97639 0.97153 1.69692 1.35453 1.23897 1.28827 0.86607 0.77403 0.82154 0.82653 1.21018 1.21729 1.20366 1.21729 0.97006 0.94134 1.00682 0.91221 1.21666 0.98158 0.99216 1.00476 1.21682 0.91637 0.85618 1.01057 0.90865 0.91894 0.91044 0.89179 0.92329 0.90724 0.90914 0.84327 0.83810 0.90247 0.90603 0.89604 0.92039 0.80549 0.92963 0.91286 0.93473 0.92413 0.89134 0.90782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.18 37.16 0.34 -0.68 16 2 C -0.01 -0.07 3.26 -91.77 -0.30 -0.37 16 3 C -0.14 -0.76 9.18 37.16 0.34 -0.42 16 4 C 0.20 2.20 6.64 -155.43 -1.03 1.17 16 5 N -0.30 -4.17 12.36 32.70 0.40 -3.76 16 6 N -0.07 -1.16 13.43 60.35 0.81 -0.35 16 7 N -0.08 -1.22 13.29 60.35 0.80 -0.42 16 8 N -0.29 -3.34 2.83 -59.44 -0.17 -3.51 16 9 C 0.09 0.71 4.91 -5.20 -0.03 0.69 16 10 C 0.50 5.52 7.77 -10.99 -0.09 5.43 16 11 O -0.53 -8.02 15.84 5.56 0.09 -7.93 16 12 N -0.60 -6.08 2.98 -173.05 -0.52 -6.59 16 13 C 0.10 0.87 6.34 -3.71 -0.02 0.84 16 14 C -0.15 -2.03 5.66 -26.61 -0.15 -2.18 16 15 C 0.19 2.98 2.20 -67.88 -0.15 2.83 16 16 H 0.06 0.96 8.08 -51.93 -0.42 0.54 16 17 N -0.74 -15.52 4.21 -53.38 -0.22 -15.74 16 18 C -0.25 -6.28 10.41 -15.06 -0.16 -6.44 16 19 H 0.09 2.46 8.06 -52.48 -0.42 2.04 16 20 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 21 N -0.93 -27.78 13.97 55.49 0.78 -27.01 16 22 Si 0.88 21.06 27.73 -169.99 -4.71 16.34 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 25 H -0.28 -6.27 6.52 56.52 0.37 -5.90 16 26 C -0.12 -1.57 2.44 -90.73 -0.22 -1.79 16 27 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 28 C -0.14 -1.87 9.03 37.16 0.34 -1.53 16 29 C 0.12 1.40 5.69 -3.95 -0.02 1.37 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.09 0.44 6.85 -51.93 -0.36 0.08 16 34 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.14 0.48 6.93 -51.93 -0.36 0.12 16 38 H 0.14 0.87 7.69 -51.93 -0.40 0.47 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.08 0.41 5.93 -51.93 -0.31 0.10 16 41 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 43 H 0.36 7.68 5.37 -40.82 -0.22 7.46 16 44 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.07 1.09 7.36 -51.93 -0.38 0.71 16 46 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.09 1.13 7.01 -51.93 -0.36 0.77 16 49 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 393.00 15.07 5.92 5.92 Total: -1.00 -34.85 393.00 -5.96 -40.81 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -7.89 Total: 3.19 kcal Atomic # 6 Polarization: 0.29 SS G_CDS: -1.24 Total: -0.96 kcal Atomic # 7 Polarization: -59.26 SS G_CDS: 1.88 Total: -57.38 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: 0.09 Total: -7.93 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.71 Total: 16.34 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.85 -5.96 -40.81 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036217639.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.131 kcal (2) G-P(sol) polarization free energy of solvation -34.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds