Wall clock time and date at job start Tue Mar 31 2020 21:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47585 * 2 1 4 4 C 1.50699 * 109.47479 * 120.00195 * 2 1 3 5 5 N 1.31074 * 126.65784 * 299.97916 * 4 2 1 6 6 N 1.28840 * 107.99011 * 180.02562 * 5 4 2 7 7 N 1.28744 * 109.39557 * 359.97438 * 6 5 4 8 8 N 1.29013 * 108.81146 * 0.02562 * 7 6 5 9 9 C 1.46501 * 126.44071 * 180.02562 * 8 7 6 10 10 C 1.50696 * 109.47535 * 89.96809 * 9 8 7 11 11 O 1.21276 * 119.99860 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00122 * 179.97438 * 10 9 8 13 13 C 1.46929 * 120.63024 * 0.02562 * 12 10 9 14 14 C 1.53191 * 108.77715 * 126.36405 * 13 12 10 15 15 C 1.53042 * 109.31187 * 54.63501 * 14 13 12 16 16 H 1.09000 * 109.46044 * 58.65852 * 15 14 13 17 17 N 1.46504 * 109.46113 * 178.62853 * 15 14 13 18 18 C 1.36928 * 120.00020 * 275.00027 * 17 15 14 19 19 H 1.08003 * 120.00036 * 359.97438 * 18 17 15 20 20 C 1.38812 * 119.99986 * 179.97438 * 18 17 15 21 21 N 1.31627 * 120.00025 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00168 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.46943 * 89.99871 * 22 20 18 24 24 H 1.48501 * 109.47227 * 210.00038 * 22 20 18 25 25 H 1.48502 * 109.47037 * 330.00186 * 22 20 18 26 26 C 1.53043 * 109.53749 * 298.63264 * 15 14 13 27 27 H 1.08995 * 109.50019 * 301.41226 * 26 15 14 28 28 C 1.53008 * 109.49717 * 181.34634 * 26 15 14 29 29 C 1.46921 * 120.63161 * 179.71643 * 12 10 9 30 30 H 1.09002 * 109.47067 * 59.99650 * 1 2 3 31 31 H 1.08999 * 109.47355 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47071 * 300.00490 * 1 2 3 33 33 H 1.09007 * 109.47287 * 240.00239 * 2 1 3 34 34 H 1.08993 * 109.47434 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.46747 * 300.00542 * 3 2 1 36 36 H 1.09003 * 109.46863 * 59.99378 * 3 2 1 37 37 H 1.09001 * 109.46867 * 209.97016 * 9 8 7 38 38 H 1.08995 * 109.46647 * 329.96689 * 9 8 7 39 39 H 1.08998 * 109.58510 * 246.15229 * 13 12 10 40 40 H 1.09002 * 109.58788 * 6.43576 * 13 12 10 41 41 H 1.08997 * 109.50383 * 174.58695 * 14 13 12 42 42 H 1.08999 * 109.50089 * 294.65648 * 14 13 12 43 43 H 0.97010 * 119.99812 * 95.00130 * 17 15 14 44 44 H 0.96993 * 119.99877 * 179.97438 * 21 20 18 45 45 H 1.08996 * 109.46526 * 60.00365 * 28 26 15 46 46 H 1.08995 * 109.46861 * 180.02562 * 28 26 15 47 47 H 1.09000 * 109.46893 * 300.00541 * 28 26 15 48 48 H 1.09001 * 109.59124 * 353.42823 * 29 12 10 49 49 H 1.09005 * 109.58338 * 113.85170 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7979 -0.3782 2.4765 6 7 2.3996 -1.2283 3.2349 7 7 3.0113 -2.0945 2.5050 8 7 2.8092 -1.8092 1.2632 9 6 3.3269 -2.5436 0.1061 10 6 2.3441 -3.6153 -0.2896 11 8 1.3126 -3.7519 0.3333 12 7 2.6111 -4.4212 -1.3362 13 6 3.8563 -4.2676 -2.1009 14 6 4.5733 -5.6203 -2.1527 15 6 3.6188 -6.6780 -2.7117 16 1 3.2887 -6.3796 -3.7068 17 7 4.3116 -7.9663 -2.7933 18 6 5.0752 -8.2648 -3.8900 19 1 5.1665 -7.5506 -4.6950 20 6 5.7320 -9.4853 -3.9671 21 7 6.4657 -9.7724 -5.0215 22 14 5.5747 -10.7202 -2.5744 23 1 4.4140 -11.6102 -2.8307 24 1 6.8140 -11.5343 -2.4922 25 1 5.3711 -9.9979 -1.2929 26 6 2.4044 -6.8100 -1.7898 27 1 2.7359 -7.0844 -0.7884 28 6 1.4671 -7.8912 -2.3316 29 6 1.6657 -5.4746 -1.7302 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 3.4689 -1.8553 -0.7272 38 1 4.2809 -3.0029 0.3646 39 1 3.6248 -3.9377 -3.1136 40 1 4.4956 -3.5312 -1.6139 41 1 5.4490 -5.5436 -2.7971 42 1 4.8849 -5.9057 -1.1479 43 1 4.2293 -8.6079 -2.0704 44 1 6.9250 -10.6250 -5.0751 45 1 1.9964 -8.8431 -2.3734 46 1 0.6022 -7.9845 -1.6749 47 1 1.1350 -7.6159 -3.3326 48 1 0.8611 -5.5362 -0.9974 49 1 1.2516 -5.2454 -2.7121 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036217639.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:20:46 Heat of formation + Delta-G solvation = 66.820663 kcal Electronic energy + Delta-G solvation = -30104.862015 eV Core-core repulsion = 26104.005777 eV Total energy + Delta-G solvation = -4000.856238 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -45.30761 -41.51396 -39.30228 -37.16728 -36.48897 -36.36510 -34.57827 -33.25315 -32.54957 -31.58291 -30.43597 -28.10151 -27.59758 -26.67596 -25.48391 -24.59859 -23.99956 -23.03815 -21.89670 -21.43596 -20.59525 -19.49396 -19.03941 -18.48876 -17.58035 -17.03904 -16.75469 -16.71783 -16.35869 -16.04510 -15.58344 -15.30087 -15.02477 -14.86402 -14.70718 -14.45462 -14.23290 -14.18718 -13.77671 -13.70391 -13.45855 -13.21868 -13.08436 -13.00735 -12.97184 -12.85957 -12.68780 -12.54148 -12.42143 -12.29275 -12.27837 -12.13763 -12.02342 -11.89418 -11.88714 -11.76215 -11.22090 -11.17674 -10.99830 -10.85956 -9.82353 -9.26179 -7.99577 -5.30609 0.08571 0.80959 1.12512 1.24693 1.37964 1.38494 1.45758 1.82375 2.49022 2.87413 3.06647 3.13219 3.32906 3.53742 3.57588 3.74695 3.82719 3.95737 4.02356 4.02715 4.06097 4.17989 4.23953 4.36380 4.37761 4.45857 4.60129 4.62682 4.71241 4.76763 4.78901 4.82889 4.84892 4.91527 4.92319 4.94687 4.99568 5.10132 5.17044 5.24686 5.29515 5.37053 5.37773 5.44853 5.59806 5.82051 6.17310 6.25115 6.82141 7.11349 7.47714 7.89165 8.05479 9.21816 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.021279 B = 0.002547 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1315.562294 B =10992.032652 C =11086.675798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.011 4.011 3 C -0.140 4.140 4 C 0.210 3.790 5 N -0.329 5.329 6 N -0.107 5.107 7 N -0.107 5.107 8 N -0.291 5.291 9 C 0.085 3.915 10 C 0.504 3.496 11 O -0.574 6.574 12 N -0.592 5.592 13 C 0.107 3.893 14 C -0.150 4.150 15 C 0.180 3.820 16 H 0.056 0.944 17 N -0.750 5.750 18 C -0.212 4.212 19 H 0.067 0.933 20 C -0.062 4.062 21 N -0.983 5.983 22 Si 0.942 3.058 23 H -0.283 1.283 24 H -0.302 1.302 25 H -0.258 1.258 26 C -0.105 4.105 27 H 0.057 0.943 28 C -0.136 4.136 29 C 0.128 3.872 30 H 0.102 0.898 31 H 0.039 0.961 32 H 0.056 0.944 33 H 0.123 0.877 34 H 0.064 0.936 35 H 0.100 0.900 36 H 0.054 0.946 37 H 0.194 0.806 38 H 0.167 0.833 39 H 0.102 0.898 40 H 0.120 0.880 41 H 0.071 0.929 42 H 0.053 0.947 43 H 0.360 0.640 44 H 0.255 0.745 45 H 0.042 0.958 46 H 0.064 0.936 47 H 0.062 0.938 48 H 0.080 0.920 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.439 22.699 4.684 25.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.033 4.033 3 C -0.198 4.198 4 C -0.068 4.068 5 N -0.178 5.178 6 N -0.101 5.101 7 N -0.093 5.093 8 N -0.092 5.092 9 C -0.039 4.039 10 C 0.290 3.710 11 O -0.454 6.454 12 N -0.323 5.323 13 C -0.015 4.015 14 C -0.190 4.190 15 C 0.073 3.927 16 H 0.074 0.926 17 N -0.392 5.392 18 C -0.344 4.344 19 H 0.085 0.915 20 C -0.253 4.253 21 N -0.635 5.635 22 Si 0.771 3.229 23 H -0.210 1.210 24 H -0.229 1.229 25 H -0.182 1.182 26 C -0.126 4.126 27 H 0.075 0.925 28 C -0.194 4.194 29 C 0.006 3.994 30 H 0.121 0.879 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.141 0.859 34 H 0.083 0.917 35 H 0.119 0.881 36 H 0.074 0.926 37 H 0.211 0.789 38 H 0.184 0.816 39 H 0.120 0.880 40 H 0.138 0.862 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.193 0.807 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.099 0.901 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -9.754 22.475 6.235 25.282 hybrid contribution 0.380 -1.947 -0.001 1.984 sum -9.374 20.528 6.234 23.412 Atomic orbital electron populations 1.21818 0.92057 1.01940 1.04155 1.20144 0.97510 0.96981 0.88665 1.21857 1.01652 0.92098 1.04199 1.26837 0.93257 0.88381 0.98337 1.74854 1.20691 1.22444 0.99805 1.78567 1.08100 0.99780 1.23654 1.78808 1.20795 1.20964 0.88715 1.48129 1.34352 1.20063 1.06685 1.22602 0.98696 0.95963 0.86638 1.20652 0.87049 0.83250 0.80004 1.90798 1.28702 1.72075 1.53781 1.48134 1.22017 1.32328 1.29871 1.22152 0.83464 0.97651 0.98217 1.22498 0.99714 0.95377 1.01443 1.20464 0.90282 0.84937 0.97066 0.92621 1.42848 1.58330 1.17283 1.20732 1.19011 1.19285 0.99677 0.96388 0.91490 1.25336 1.00511 0.99967 0.99533 1.69849 1.37919 1.24391 1.31296 0.85607 0.76561 0.79872 0.80859 1.21006 1.22942 1.18249 1.21596 0.96148 0.95641 0.99169 0.92464 1.21643 0.98534 0.97951 1.01310 1.21530 0.91347 0.84773 1.01799 0.87941 0.94141 0.92531 0.85937 0.91685 0.88092 0.92644 0.78949 0.81580 0.87990 0.86159 0.91022 0.92850 0.80710 0.93636 0.93858 0.91734 0.91903 0.90123 0.88935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.18 71.98 0.66 -1.03 16 2 C -0.01 -0.12 3.26 -11.54 -0.04 -0.16 16 3 C -0.14 -0.99 9.18 71.98 0.66 -0.33 16 4 C 0.21 4.17 6.64 138.13 0.92 5.09 16 5 N -0.33 -9.02 12.36 -50.45 -0.62 -9.64 16 6 N -0.11 -3.37 13.43 37.01 0.50 -2.88 16 7 N -0.11 -3.02 13.29 37.02 0.49 -2.53 16 8 N -0.29 -5.91 2.83 -341.98 -0.97 -6.88 16 9 C 0.08 0.92 4.91 85.63 0.42 1.34 16 10 C 0.50 9.31 7.77 87.66 0.68 9.99 16 11 O -0.57 -16.48 15.84 -3.02 -0.05 -16.53 16 12 N -0.59 -9.74 2.98 -819.82 -2.44 -12.18 16 13 C 0.11 1.31 6.34 86.36 0.55 1.86 16 14 C -0.15 -3.50 5.66 30.67 0.17 -3.33 16 15 C 0.18 5.37 2.20 45.02 0.10 5.47 16 16 H 0.06 1.71 8.08 -2.39 -0.02 1.69 16 17 N -0.75 -30.66 4.21 -322.80 -1.36 -32.02 16 18 C -0.21 -10.89 10.41 84.04 0.87 -10.01 16 19 H 0.07 3.71 8.06 -2.91 -0.02 3.68 16 20 C -0.06 -3.45 5.50 84.86 0.47 -2.99 16 21 N -0.98 -60.23 13.97 21.65 0.30 -59.93 16 22 Si 0.94 44.01 27.73 68.60 1.90 45.91 16 23 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 24 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 25 H -0.26 -10.98 6.52 99.48 0.65 -10.33 16 26 C -0.11 -2.67 2.44 -10.87 -0.03 -2.70 16 27 H 0.06 1.60 8.14 -2.39 -0.02 1.59 16 28 C -0.14 -3.53 9.03 71.98 0.65 -2.88 16 29 C 0.13 2.58 5.69 86.21 0.49 3.07 16 30 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.12 0.48 6.85 -2.38 -0.02 0.47 16 34 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 36 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.19 -0.05 6.93 -2.39 -0.02 -0.06 16 38 H 0.17 1.16 7.69 -2.39 -0.02 1.14 16 39 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.12 0.49 5.93 -2.39 -0.01 0.47 16 41 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.36 14.93 5.37 -92.70 -0.50 14.43 16 44 H 0.25 15.09 8.31 -92.71 -0.77 14.31 16 45 H 0.04 1.34 7.36 -2.39 -0.02 1.32 16 46 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 47 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.08 1.86 7.01 -2.39 -0.02 1.84 16 49 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 Total: -1.00 -81.92 393.00 4.73 -77.19 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.40 Total: 16.09 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: 6.58 Total: 3.40 kcal Atomic # 7 Polarization: -121.95 SS G_CDS: -4.10 Total: -126.06 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.05 Total: -16.53 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 1.90 Total: 45.91 kcal Total: -81.92 4.73 -77.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036217639.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.010 kcal (2) G-P(sol) polarization free energy of solvation -81.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds