Wall clock time and date at job start Tue Mar 31 2020 21:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.69864 * 2 1 4 4 C 1.53188 * 109.59040 * 239.64478 * 2 1 3 5 5 C 1.53038 * 109.31530 * 185.57631 * 4 2 1 6 6 H 1.09001 * 109.45864 * 301.35718 * 5 4 2 7 7 N 1.46502 * 109.46225 * 181.38447 * 5 4 2 8 8 C 1.36932 * 120.00385 * 154.96842 * 7 5 4 9 9 H 1.08005 * 119.99576 * 0.02562 * 8 7 5 10 10 C 1.38805 * 120.00322 * 180.02562 * 8 7 5 11 11 N 1.31622 * 120.00124 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 119.99940 * 359.97438 * 10 8 7 13 13 H 1.48506 * 109.46575 * 90.00336 * 12 10 8 14 14 H 1.48491 * 109.47069 * 330.00625 * 12 10 8 15 15 H 1.48501 * 109.47300 * 209.99896 * 12 10 8 16 16 C 1.53039 * 109.53005 * 61.36750 * 5 4 2 17 17 C 1.53188 * 109.31536 * 298.62074 * 16 5 4 18 18 N 1.46927 * 109.58902 * 120.34897 * 2 1 3 19 19 C 1.34780 * 120.63105 * 353.42543 * 18 2 1 20 20 O 1.21539 * 119.99666 * 6.34076 * 19 18 2 21 21 C 1.48005 * 119.99878 * 186.34283 * 19 18 2 22 22 N 1.34192 * 126.69917 * 6.96706 * 21 19 18 23 23 N 1.28983 * 107.25027 * 179.83226 * 22 21 19 24 24 N 1.28725 * 108.98810 * 0.43156 * 23 22 21 25 25 C 1.46492 * 125.31930 * 179.68542 * 24 23 22 26 26 C 1.52999 * 109.47522 * 240.04282 * 25 24 23 27 27 C 1.52995 * 109.47383 * 0.04833 * 25 24 23 28 28 C 1.53004 * 109.46921 * 120.04293 * 25 24 23 29 29 N 1.28871 * 109.35640 * 359.72739 * 24 23 22 30 30 H 1.09005 * 109.46976 * 183.16883 * 1 2 3 31 31 H 1.09004 * 109.47192 * 303.16606 * 1 2 3 32 32 H 1.08998 * 109.47465 * 63.16930 * 1 2 3 33 33 H 1.09004 * 109.49730 * 65.62253 * 4 2 1 34 34 H 1.09003 * 109.49780 * 305.52401 * 4 2 1 35 35 H 0.96999 * 119.99653 * 334.97494 * 7 5 4 36 36 H 0.97002 * 120.00052 * 179.97438 * 11 10 8 37 37 H 1.09002 * 109.49124 * 58.58255 * 16 5 4 38 38 H 1.08992 * 109.49981 * 178.67328 * 16 5 4 39 39 H 1.09009 * 109.59494 * 294.86343 * 17 16 5 40 40 H 1.08991 * 109.70563 * 174.50645 * 17 16 5 41 41 H 1.09003 * 109.47106 * 59.99965 * 26 25 24 42 42 H 1.09001 * 109.47577 * 180.02562 * 26 25 24 43 43 H 1.09003 * 109.47065 * 300.00800 * 26 25 24 44 44 H 1.08998 * 109.47485 * 59.99068 * 27 25 24 45 45 H 1.09001 * 109.47295 * 180.02562 * 27 25 24 46 46 H 1.09009 * 109.47172 * 299.99701 * 27 25 24 47 47 H 1.09000 * 109.46962 * 60.00524 * 28 25 24 48 48 H 1.09001 * 109.46955 * 179.97438 * 28 25 24 49 49 H 1.09001 * 109.47449 * 300.00141 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8973 1.0262 0.0000 4 6 2.0436 -0.7293 -1.2454 5 6 3.5675 -0.8479 -1.1701 6 1 4.0061 0.1475 -1.0990 7 7 4.0653 -1.5157 -2.3753 8 6 5.3495 -1.2982 -2.7977 9 1 5.9956 -0.6346 -2.2421 10 6 5.8210 -1.9304 -3.9399 11 7 7.0556 -1.7217 -4.3457 12 14 4.7037 -3.0787 -4.9005 13 1 3.9686 -2.3048 -5.9331 14 1 3.7329 -3.7144 -3.9739 15 1 5.5213 -4.1295 -5.5582 16 6 3.9567 -1.6657 0.0636 17 6 3.4651 -0.9468 1.3238 18 7 2.0225 -0.6994 1.1945 19 6 1.1673 -1.1069 2.1533 20 8 -0.0314 -1.0010 1.9832 21 6 1.6881 -1.6832 3.4132 22 7 2.9726 -1.7435 3.7967 23 7 3.0001 -2.3144 4.9530 24 7 1.7979 -2.6179 5.2989 25 6 1.4187 -3.2859 6.5463 26 6 0.7141 -4.6053 6.2245 27 6 2.6729 -3.5667 7.3763 28 6 0.4728 -2.3833 7.3411 29 7 0.9803 -2.2430 4.3760 30 1 -0.3633 -1.0262 0.0568 31 1 -0.3634 0.5622 0.8603 32 1 -0.3634 0.4638 -0.9170 33 1 1.7660 -0.1668 -2.1368 34 1 1.6031 -1.7253 -1.2912 35 1 3.4851 -2.1118 -2.8741 36 1 7.3852 -2.1639 -5.1437 37 1 3.4980 -2.6527 0.0052 38 1 5.0409 -1.7698 0.1038 39 1 3.9903 0.0023 1.4317 40 1 3.6521 -1.5694 2.1986 41 1 1.3879 -5.2484 5.6583 42 1 0.4315 -5.1022 7.1526 43 1 -0.1795 -4.4052 5.6332 44 1 3.1749 -2.6268 7.6055 45 1 2.3907 -4.0642 8.3042 46 1 3.3468 -4.2098 6.8101 47 1 -0.4208 -2.1832 6.7498 48 1 0.1903 -2.8805 8.2690 49 1 0.9748 -1.4432 7.5704 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044606763.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:44 Heat of formation + Delta-G solvation = 133.574217 kcal Electronic energy + Delta-G solvation = -30171.895728 eV Core-core repulsion = 26173.934142 eV Total energy + Delta-G solvation = -3997.961587 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.64441 -40.43257 -38.09071 -37.49881 -34.74482 -33.74692 -33.41155 -31.94422 -31.88988 -29.80893 -28.20947 -28.15267 -27.23501 -25.60852 -24.82543 -24.11540 -22.61831 -21.86561 -21.09065 -20.24888 -19.52026 -17.69930 -17.59680 -17.38125 -16.82703 -16.05739 -15.37791 -14.96002 -14.86440 -14.70885 -14.55504 -14.24467 -14.08632 -13.53972 -13.45491 -13.31924 -13.12666 -12.98931 -12.93661 -12.66573 -12.50411 -12.43963 -12.27873 -12.15599 -12.08707 -11.86895 -11.75971 -11.53533 -11.22119 -11.10064 -10.98847 -10.84218 -10.75870 -10.55196 -10.33699 -10.17041 -9.87099 -9.57784 -9.35100 -8.88977 -8.52537 -7.25685 -5.75712 -3.11202 0.83683 1.30240 1.40524 2.64190 3.02363 3.39069 3.42473 3.46769 3.61371 3.79308 3.92207 4.02877 4.31399 4.60572 4.75091 4.83328 4.84599 4.91633 4.98411 5.00706 5.05072 5.06979 5.12672 5.24330 5.27678 5.38047 5.42649 5.48863 5.50302 5.58666 5.59837 5.65865 5.82132 5.86683 5.92752 6.01070 6.05231 6.28002 6.30718 6.34055 6.40340 6.48239 6.69077 6.85553 6.99912 7.32599 7.88293 8.00503 8.11918 8.43470 9.21839 9.94651 10.14599 11.42582 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.016984 B = 0.002749 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.251288 B =10182.000674 C =11005.044817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.149 3.851 3 H 0.080 0.920 4 C -0.139 4.139 5 C 0.182 3.818 6 H 0.058 0.942 7 N -0.748 5.748 8 C -0.242 4.242 9 H 0.091 0.909 10 C 0.004 3.996 11 N -0.934 5.934 12 Si 0.883 3.117 13 H -0.284 1.284 14 H -0.278 1.278 15 H -0.292 1.292 16 C -0.148 4.148 17 C 0.081 3.919 18 N -0.578 5.578 19 C 0.612 3.388 20 O -0.511 6.511 21 C 0.132 3.868 22 N -0.253 5.253 23 N -0.058 5.058 24 N -0.125 5.125 25 C 0.176 3.824 26 C -0.161 4.161 27 C -0.154 4.154 28 C -0.160 4.160 29 N -0.248 5.248 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.048 0.952 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.361 0.639 36 H 0.259 0.741 37 H 0.055 0.945 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.120 0.880 41 H 0.069 0.931 42 H 0.092 0.908 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.090 0.910 46 H 0.077 0.923 47 H 0.079 0.921 48 H 0.092 0.908 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.361 -2.220 26.145 29.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.047 3.953 3 H 0.098 0.902 4 C -0.178 4.178 5 C 0.072 3.928 6 H 0.076 0.924 7 N -0.390 5.390 8 C -0.371 4.371 9 H 0.109 0.891 10 C -0.192 4.192 11 N -0.582 5.582 12 Si 0.714 3.286 13 H -0.211 1.211 14 H -0.204 1.204 15 H -0.218 1.218 16 C -0.189 4.189 17 C -0.042 4.042 18 N -0.311 5.311 19 C 0.394 3.606 20 O -0.384 6.384 21 C -0.152 4.152 22 N -0.127 5.127 23 N -0.050 5.050 24 N -0.040 5.040 25 C 0.096 3.904 26 C -0.219 4.219 27 C -0.212 4.212 28 C -0.218 4.218 29 N -0.101 5.101 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.067 0.933 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.193 0.807 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.101 0.899 39 H 0.090 0.910 40 H 0.137 0.863 41 H 0.088 0.912 42 H 0.110 0.890 43 H 0.098 0.902 44 H 0.096 0.904 45 H 0.109 0.891 46 H 0.096 0.904 47 H 0.098 0.902 48 H 0.110 0.890 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -14.341 -2.255 26.447 30.169 hybrid contribution -0.753 -0.847 -1.140 1.607 sum -15.094 -3.101 25.307 29.629 Atomic orbital electron populations 1.22255 0.92661 1.03829 1.00918 1.21418 0.95554 0.95283 0.83034 0.90167 1.22355 0.97698 1.01039 0.96711 1.20184 0.90648 0.95527 0.86424 0.92364 1.42794 1.13188 1.54842 1.28168 1.19075 0.87693 1.23207 1.07167 0.89106 1.24666 0.96101 1.00128 0.98262 1.69702 1.15075 1.47263 1.26155 0.86564 0.80357 0.81304 0.80381 1.21100 1.20376 1.21836 1.22617 1.02285 0.99555 0.94477 1.22672 0.77809 1.02199 1.01499 1.48004 1.08394 1.55672 1.19046 1.16300 0.85586 0.78573 0.80154 1.90888 1.14460 1.55053 1.78024 1.25560 0.87393 1.03663 0.98585 1.76035 1.17910 1.15493 1.03301 1.78928 1.05873 1.11937 1.08294 1.50729 1.02084 1.35564 1.15624 1.21515 0.98177 0.93240 0.77485 1.22265 1.01692 0.93839 1.04120 1.22114 0.95019 1.04264 0.99771 1.22258 0.99421 0.99550 1.00602 1.74963 1.22374 1.14323 0.98449 0.90970 0.91230 0.93286 0.90207 0.91755 0.80686 0.93097 0.92577 0.89938 0.90953 0.86256 0.91189 0.88954 0.90241 0.90444 0.89094 0.90382 0.90236 0.88972 0.91270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 7.59 37.15 0.28 -1.61 16 2 C 0.15 2.10 3.49 -67.60 -0.24 1.87 16 3 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 4 C -0.14 -2.19 4.84 -26.61 -0.13 -2.32 16 5 C 0.18 3.41 2.73 -67.89 -0.19 3.22 16 6 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 7 N -0.75 -17.47 4.92 -53.39 -0.26 -17.73 16 8 C -0.24 -6.71 10.41 -15.06 -0.16 -6.87 16 9 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 10 C 0.00 0.12 5.50 -17.43 -0.10 0.02 16 11 N -0.93 -29.28 13.97 55.49 0.78 -28.50 16 12 Si 0.88 22.23 27.74 -169.99 -4.71 17.51 16 13 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 14 H -0.28 -6.63 6.52 56.52 0.37 -6.26 16 15 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 16 C -0.15 -2.57 5.66 -26.61 -0.15 -2.72 16 17 C 0.08 1.20 6.13 -3.71 -0.02 1.17 16 18 N -0.58 -8.52 2.97 -166.27 -0.49 -9.01 16 19 C 0.61 9.49 7.62 -12.26 -0.09 9.40 16 20 O -0.51 -8.59 12.50 5.33 0.07 -8.53 16 21 C 0.13 1.93 7.81 -156.25 -1.22 0.71 16 22 N -0.25 -3.59 9.04 32.10 0.29 -3.30 16 23 N -0.06 -0.73 12.21 60.35 0.74 0.01 16 24 N -0.13 -1.36 3.72 0.52 0.00 -1.36 16 25 C 0.18 1.12 1.30 -131.82 -0.17 0.95 16 26 C -0.16 -0.84 8.66 37.16 0.32 -0.51 16 27 C -0.15 -0.70 7.90 37.15 0.29 -0.40 16 28 C -0.16 -0.78 8.66 37.16 0.32 -0.46 16 29 N -0.25 -3.31 11.86 32.11 0.38 -2.93 16 30 H 0.07 1.09 6.75 -51.93 -0.35 0.74 16 31 H 0.07 0.98 6.75 -51.93 -0.35 0.63 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.36 8.39 5.66 -40.82 -0.23 8.16 16 36 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 39 H 0.07 1.00 8.14 -51.92 -0.42 0.57 16 40 H 0.12 1.76 4.11 -71.77 -0.29 1.46 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 43 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 46 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 47 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 49 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 LS Contribution 385.95 15.07 5.82 5.82 Total: -1.00 -33.74 385.95 -6.65 -40.38 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -8.00 Total: 5.19 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: -1.24 Total: 2.45 kcal Atomic # 7 Polarization: -64.26 SS G_CDS: 1.43 Total: -62.83 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.07 Total: -8.53 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.71 Total: 17.51 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.74 -6.65 -40.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044606763.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.958 kcal (2) G-P(sol) polarization free energy of solvation -33.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds