Wall clock time and date at job start Tue Mar 31 2020 21:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.69864 * 2 1 4 4 C 1.53188 * 109.59040 * 239.64478 * 2 1 3 5 5 C 1.53038 * 109.31530 * 185.57631 * 4 2 1 6 6 H 1.09001 * 109.45864 * 301.35718 * 5 4 2 7 7 N 1.46502 * 109.46225 * 181.38447 * 5 4 2 8 8 C 1.36932 * 120.00385 * 154.96842 * 7 5 4 9 9 H 1.08005 * 119.99576 * 0.02562 * 8 7 5 10 10 C 1.38805 * 120.00322 * 180.02562 * 8 7 5 11 11 N 1.31622 * 120.00124 * 180.02562 * 10 8 7 12 12 Si 1.86801 * 119.99940 * 359.97438 * 10 8 7 13 13 H 1.48506 * 109.46575 * 90.00336 * 12 10 8 14 14 H 1.48491 * 109.47069 * 330.00625 * 12 10 8 15 15 H 1.48501 * 109.47300 * 209.99896 * 12 10 8 16 16 C 1.53039 * 109.53005 * 61.36750 * 5 4 2 17 17 C 1.53188 * 109.31536 * 298.62074 * 16 5 4 18 18 N 1.46927 * 109.58902 * 120.34897 * 2 1 3 19 19 C 1.34780 * 120.63105 * 353.42543 * 18 2 1 20 20 O 1.21539 * 119.99666 * 6.34076 * 19 18 2 21 21 C 1.48005 * 119.99878 * 186.34283 * 19 18 2 22 22 N 1.34192 * 126.69917 * 6.96706 * 21 19 18 23 23 N 1.28983 * 107.25027 * 179.83226 * 22 21 19 24 24 N 1.28725 * 108.98810 * 0.43156 * 23 22 21 25 25 C 1.46492 * 125.31930 * 179.68542 * 24 23 22 26 26 C 1.52999 * 109.47522 * 240.04282 * 25 24 23 27 27 C 1.52995 * 109.47383 * 0.04833 * 25 24 23 28 28 C 1.53004 * 109.46921 * 120.04293 * 25 24 23 29 29 N 1.28871 * 109.35640 * 359.72739 * 24 23 22 30 30 H 1.09005 * 109.46976 * 183.16883 * 1 2 3 31 31 H 1.09004 * 109.47192 * 303.16606 * 1 2 3 32 32 H 1.08998 * 109.47465 * 63.16930 * 1 2 3 33 33 H 1.09004 * 109.49730 * 65.62253 * 4 2 1 34 34 H 1.09003 * 109.49780 * 305.52401 * 4 2 1 35 35 H 0.96999 * 119.99653 * 334.97494 * 7 5 4 36 36 H 0.97002 * 120.00052 * 179.97438 * 11 10 8 37 37 H 1.09002 * 109.49124 * 58.58255 * 16 5 4 38 38 H 1.08992 * 109.49981 * 178.67328 * 16 5 4 39 39 H 1.09009 * 109.59494 * 294.86343 * 17 16 5 40 40 H 1.08991 * 109.70563 * 174.50645 * 17 16 5 41 41 H 1.09003 * 109.47106 * 59.99965 * 26 25 24 42 42 H 1.09001 * 109.47577 * 180.02562 * 26 25 24 43 43 H 1.09003 * 109.47065 * 300.00800 * 26 25 24 44 44 H 1.08998 * 109.47485 * 59.99068 * 27 25 24 45 45 H 1.09001 * 109.47295 * 180.02562 * 27 25 24 46 46 H 1.09009 * 109.47172 * 299.99701 * 27 25 24 47 47 H 1.09000 * 109.46962 * 60.00524 * 28 25 24 48 48 H 1.09001 * 109.46955 * 179.97438 * 28 25 24 49 49 H 1.09001 * 109.47449 * 300.00141 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8973 1.0262 0.0000 4 6 2.0436 -0.7293 -1.2454 5 6 3.5675 -0.8479 -1.1701 6 1 4.0061 0.1475 -1.0990 7 7 4.0653 -1.5157 -2.3753 8 6 5.3495 -1.2982 -2.7977 9 1 5.9956 -0.6346 -2.2421 10 6 5.8210 -1.9304 -3.9399 11 7 7.0556 -1.7217 -4.3457 12 14 4.7037 -3.0787 -4.9005 13 1 3.9686 -2.3048 -5.9331 14 1 3.7329 -3.7144 -3.9739 15 1 5.5213 -4.1295 -5.5582 16 6 3.9567 -1.6657 0.0636 17 6 3.4651 -0.9468 1.3238 18 7 2.0225 -0.6994 1.1945 19 6 1.1673 -1.1069 2.1533 20 8 -0.0314 -1.0010 1.9832 21 6 1.6881 -1.6832 3.4132 22 7 2.9726 -1.7435 3.7967 23 7 3.0001 -2.3144 4.9530 24 7 1.7979 -2.6179 5.2989 25 6 1.4187 -3.2859 6.5463 26 6 0.7141 -4.6053 6.2245 27 6 2.6729 -3.5667 7.3763 28 6 0.4728 -2.3833 7.3411 29 7 0.9803 -2.2430 4.3760 30 1 -0.3633 -1.0262 0.0568 31 1 -0.3634 0.5622 0.8603 32 1 -0.3634 0.4638 -0.9170 33 1 1.7660 -0.1668 -2.1368 34 1 1.6031 -1.7253 -1.2912 35 1 3.4851 -2.1118 -2.8741 36 1 7.3852 -2.1639 -5.1437 37 1 3.4980 -2.6527 0.0052 38 1 5.0409 -1.7698 0.1038 39 1 3.9903 0.0023 1.4317 40 1 3.6521 -1.5694 2.1986 41 1 1.3879 -5.2484 5.6583 42 1 0.4315 -5.1022 7.1526 43 1 -0.1795 -4.4052 5.6332 44 1 3.1749 -2.6268 7.6055 45 1 2.3907 -4.0642 8.3042 46 1 3.3468 -4.2098 6.8101 47 1 -0.4208 -2.1832 6.7498 48 1 0.1903 -2.8805 8.2690 49 1 0.9748 -1.4432 7.5704 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044606763.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:42 Heat of formation + Delta-G solvation = 110.951994 kcal Electronic energy + Delta-G solvation = -30172.876701 eV Core-core repulsion = 26173.934142 eV Total energy + Delta-G solvation = -3998.942560 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -45.61723 -41.64856 -38.94309 -38.63479 -36.39520 -34.74773 -34.51009 -33.84015 -32.93609 -31.57207 -28.77845 -28.54037 -28.41993 -26.62997 -25.92240 -25.59743 -24.22198 -23.06411 -22.01670 -21.63067 -20.75395 -19.58768 -18.56932 -18.36747 -17.73483 -17.27579 -16.73173 -16.53622 -15.91491 -15.86216 -15.55774 -15.24571 -15.17013 -14.86536 -14.75139 -14.54839 -14.24302 -14.11261 -13.82480 -13.50551 -13.42833 -13.31658 -13.23976 -13.11371 -13.00475 -12.87917 -12.84778 -12.63514 -12.60463 -12.27204 -12.15127 -12.13561 -12.11482 -12.03203 -11.80196 -11.60458 -11.45860 -11.34389 -10.88019 -10.54414 -9.75632 -9.29356 -7.99921 -5.32897 -0.15747 0.23197 0.64986 1.38824 1.41037 1.48118 1.55040 1.85857 2.49813 2.65429 2.90824 3.31292 3.47385 3.48260 3.49208 3.62010 3.74210 3.90948 4.02566 4.06995 4.21527 4.28723 4.31819 4.41174 4.52043 4.52335 4.55368 4.56669 4.60012 4.67216 4.72194 4.72444 4.83543 4.97585 4.99124 5.01606 5.09235 5.10506 5.14001 5.17852 5.21321 5.25171 5.39233 5.44887 5.64735 5.80518 6.11797 6.24234 6.74303 7.06518 7.09928 7.86225 8.05044 9.21537 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.016984 B = 0.002749 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.251288 B =10182.000674 C =11005.044817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.151 3.849 3 H 0.098 0.902 4 C -0.128 4.128 5 C 0.176 3.824 6 H 0.054 0.946 7 N -0.751 5.751 8 C -0.223 4.223 9 H 0.061 0.939 10 C -0.065 4.065 11 N -0.984 5.984 12 Si 0.952 3.048 13 H -0.278 1.278 14 H -0.257 1.257 15 H -0.299 1.299 16 C -0.138 4.138 17 C 0.093 3.907 18 N -0.578 5.578 19 C 0.613 3.387 20 O -0.527 6.527 21 C 0.114 3.886 22 N -0.269 5.269 23 N -0.062 5.062 24 N -0.108 5.108 25 C 0.159 3.841 26 C -0.158 4.158 27 C -0.151 4.151 28 C -0.156 4.156 29 N -0.256 5.256 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.060 0.940 35 H 0.363 0.637 36 H 0.256 0.744 37 H 0.048 0.952 38 H 0.063 0.937 39 H 0.085 0.915 40 H 0.124 0.876 41 H 0.059 0.941 42 H 0.129 0.871 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.127 0.873 46 H 0.067 0.933 47 H 0.064 0.936 48 H 0.129 0.871 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.518 -2.905 28.127 32.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.049 3.951 3 H 0.116 0.884 4 C -0.167 4.167 5 C 0.068 3.932 6 H 0.072 0.928 7 N -0.394 5.394 8 C -0.354 4.354 9 H 0.079 0.921 10 C -0.256 4.256 11 N -0.635 5.635 12 Si 0.780 3.220 13 H -0.204 1.204 14 H -0.182 1.182 15 H -0.226 1.226 16 C -0.179 4.179 17 C -0.031 4.031 18 N -0.310 5.310 19 C 0.395 3.605 20 O -0.402 6.402 21 C -0.169 4.169 22 N -0.142 5.142 23 N -0.054 5.054 24 N -0.025 5.025 25 C 0.081 3.919 26 C -0.216 4.216 27 C -0.209 4.209 28 C -0.214 4.214 29 N -0.110 5.110 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.079 0.921 35 H 0.196 0.804 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.141 0.859 41 H 0.078 0.922 42 H 0.148 0.852 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.145 0.855 46 H 0.086 0.914 47 H 0.083 0.917 48 H 0.147 0.853 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -16.534 -2.929 28.479 33.061 hybrid contribution -0.092 -0.628 -1.550 1.675 sum -16.626 -3.557 26.929 31.848 Atomic orbital electron populations 1.22117 0.91881 1.02879 1.01710 1.21499 0.96048 0.95725 0.81860 0.88428 1.22231 0.94947 1.01348 0.98147 1.20413 0.92763 0.94939 0.85102 0.92760 1.42823 1.11629 1.55267 1.29636 1.19035 0.88935 1.21262 1.06138 0.92072 1.25445 0.97632 1.02637 0.99884 1.69878 1.17352 1.49258 1.27013 0.85455 0.78572 0.78938 0.79059 1.20379 1.18150 1.22610 1.22423 1.01019 0.99257 0.95228 1.22545 0.77973 1.02552 0.99991 1.48011 1.08170 1.55592 1.19256 1.16383 0.85404 0.78248 0.80455 1.90879 1.15030 1.55727 1.78525 1.25434 0.87795 1.04829 0.98860 1.75949 1.17913 1.16277 1.04106 1.78856 1.06594 1.12035 1.07866 1.51313 1.01280 1.33971 1.15938 1.22214 0.99689 0.93834 0.76195 1.22311 1.00533 0.93083 1.05674 1.22181 0.93870 1.04087 1.00716 1.22301 0.98140 0.99407 1.01583 1.74927 1.22909 1.14401 0.98740 0.92617 0.91727 0.91281 0.89217 0.92139 0.80375 0.93481 0.93350 0.91854 0.89726 0.85912 0.92212 0.85243 0.91706 0.91099 0.85462 0.91384 0.91687 0.85288 0.91907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 7.59 71.98 0.55 -2.70 16 2 C 0.15 3.97 3.49 44.97 0.16 4.12 16 3 H 0.10 2.28 8.14 -2.39 -0.02 2.27 16 4 C -0.13 -3.81 4.84 30.67 0.15 -3.66 16 5 C 0.18 6.46 2.73 45.02 0.12 6.58 16 6 H 0.05 2.05 8.08 -2.39 -0.02 2.04 16 7 N -0.75 -34.62 4.92 -322.82 -1.59 -36.21 16 8 C -0.22 -12.53 10.41 84.03 0.87 -11.65 16 9 H 0.06 3.75 8.06 -2.91 -0.02 3.72 16 10 C -0.06 -3.82 5.50 84.86 0.47 -3.35 16 11 N -0.98 -63.24 13.97 21.65 0.30 -62.94 16 12 Si 0.95 46.00 27.74 68.60 1.90 47.90 16 13 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 14 H -0.26 -11.36 6.52 99.48 0.65 -10.71 16 15 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 16 C -0.14 -4.78 5.66 30.67 0.17 -4.60 16 17 C 0.09 2.66 6.13 86.36 0.53 3.19 16 18 N -0.58 -16.43 2.97 -798.23 -2.37 -18.80 16 19 C 0.61 18.61 7.62 86.83 0.66 19.27 16 20 O -0.53 -17.40 12.50 -3.84 -0.05 -17.45 16 21 C 0.11 3.31 7.81 137.15 1.07 4.38 16 22 N -0.27 -7.54 9.04 -52.37 -0.47 -8.01 16 23 N -0.06 -1.51 12.21 37.02 0.45 -1.06 16 24 N -0.11 -2.25 3.72 -152.27 -0.57 -2.82 16 25 C 0.16 1.72 1.30 3.60 0.00 1.72 16 26 C -0.16 -1.30 8.66 71.98 0.62 -0.68 16 27 C -0.15 -1.00 7.90 71.98 0.57 -0.43 16 28 C -0.16 -1.16 8.66 71.98 0.62 -0.53 16 29 N -0.26 -6.70 11.86 -52.32 -0.62 -7.32 16 30 H 0.05 1.60 6.75 -2.38 -0.02 1.59 16 31 H 0.06 1.72 6.75 -2.39 -0.02 1.70 16 32 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.09 2.53 8.14 -2.38 -0.02 2.51 16 34 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.36 16.32 5.66 -92.71 -0.52 15.79 16 36 H 0.26 15.76 8.31 -92.71 -0.77 14.99 16 37 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.08 2.24 8.14 -2.38 -0.02 2.22 16 40 H 0.12 3.58 4.11 -28.03 -0.12 3.46 16 41 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.13 0.10 8.14 -2.39 -0.02 0.08 16 43 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.13 -0.07 8.14 -2.39 -0.02 -0.09 16 46 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 47 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.13 0.00 8.14 -2.39 -0.02 -0.02 16 49 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 Total: -1.00 -74.57 385.95 3.83 -70.75 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: 0.27 Total: 24.32 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 6.57 Total: 11.64 kcal Atomic # 7 Polarization: -132.29 SS G_CDS: -4.87 Total: -137.16 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -0.05 Total: -17.45 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 1.90 Total: 47.90 kcal Total: -74.57 3.83 -70.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044606763.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.697 kcal (2) G-P(sol) polarization free energy of solvation -74.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds