Wall clock time and date at job start Tue Mar 31 2020 21:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.58749 * 2 1 4 4 C 1.53194 * 109.58562 * 239.72351 * 2 1 3 5 5 C 1.53042 * 109.33942 * 185.41913 * 4 2 1 6 6 H 1.08995 * 109.45866 * 181.39966 * 5 4 2 7 7 N 1.46501 * 109.45690 * 301.35610 * 5 4 2 8 8 C 1.36941 * 119.99721 * 205.00233 * 7 5 4 9 9 H 1.07997 * 120.00131 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99599 * 180.02562 * 8 7 5 11 11 N 1.31622 * 120.00479 * 359.97438 * 10 8 7 12 12 Si 1.86808 * 119.99730 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47059 * 60.00097 * 12 10 8 14 14 H 1.48502 * 109.46772 * 180.02562 * 12 10 8 15 15 H 1.48495 * 109.46945 * 300.00017 * 12 10 8 16 16 C 1.53098 * 109.50310 * 61.34392 * 5 4 2 17 17 C 1.53192 * 109.33527 * 298.65395 * 16 5 4 18 18 N 1.46920 * 109.70636 * 120.36015 * 2 1 3 19 19 C 1.34776 * 120.63287 * 353.44050 * 18 2 1 20 20 O 1.21532 * 119.99664 * 6.34763 * 19 18 2 21 21 C 1.48004 * 120.00173 * 186.34535 * 19 18 2 22 22 N 1.34182 * 126.69942 * 6.96672 * 21 19 18 23 23 N 1.28986 * 107.25158 * 179.83373 * 22 21 19 24 24 N 1.28719 * 108.98433 * 0.42991 * 23 22 21 25 25 C 1.46508 * 125.31486 * 179.75989 * 24 23 22 26 26 C 1.52998 * 109.46936 * 239.95878 * 25 24 23 27 27 C 1.52998 * 109.47164 * 359.95576 * 25 24 23 28 28 C 1.53004 * 109.46877 * 119.95966 * 25 24 23 29 29 N 1.28862 * 109.36425 * 359.72668 * 24 23 22 30 30 H 1.08995 * 109.46872 * 183.13368 * 1 2 3 31 31 H 1.09004 * 109.46946 * 303.13075 * 1 2 3 32 32 H 1.09000 * 109.47214 * 63.13068 * 1 2 3 33 33 H 1.08998 * 109.49243 * 305.38265 * 4 2 1 34 34 H 1.08997 * 109.49765 * 65.44660 * 4 2 1 35 35 H 0.96997 * 120.00466 * 25.00564 * 7 5 4 36 36 H 0.96996 * 120.00399 * 179.97438 * 11 10 8 37 37 H 1.09006 * 109.48802 * 178.70038 * 16 5 4 38 38 H 1.08997 * 109.49259 * 58.61820 * 16 5 4 39 39 H 1.08995 * 109.59111 * 294.85360 * 17 16 5 40 40 H 1.08995 * 109.58957 * 174.42239 * 17 16 5 41 41 H 1.09003 * 109.47352 * 60.00149 * 26 25 24 42 42 H 1.09002 * 109.47133 * 180.02562 * 26 25 24 43 43 H 1.09002 * 109.47277 * 299.99853 * 26 25 24 44 44 H 1.08999 * 109.46836 * 60.00366 * 27 25 24 45 45 H 1.08997 * 109.46930 * 179.97438 * 27 25 24 46 46 H 1.08988 * 109.47768 * 300.00211 * 27 25 24 47 47 H 1.09003 * 109.46673 * 59.99837 * 28 25 24 48 48 H 1.08999 * 109.46634 * 179.97438 * 28 25 24 49 49 H 1.09000 * 109.46854 * 299.99666 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7277 -1.2464 5 6 3.5679 -0.8432 -1.1739 6 1 3.9376 -1.3386 -2.0716 7 7 4.1548 0.4957 -1.0788 8 6 5.4380 0.7126 -1.5049 9 1 6.0174 -0.1034 -1.9107 10 6 5.9943 1.9811 -1.4143 11 7 5.2883 2.9756 -0.9193 12 14 7.7450 2.2769 -1.9950 13 1 7.8515 1.9407 -3.4375 14 1 8.0994 3.7046 -1.7915 15 1 8.6758 1.4205 -1.2170 16 6 3.9603 -1.6607 0.0596 17 6 3.4687 -0.9436 1.3209 18 7 2.0254 -0.6991 1.1935 19 6 1.1724 -1.1079 2.1535 20 8 -0.0267 -1.0036 1.9854 21 6 1.6959 -1.6838 3.4124 22 7 2.9810 -1.7427 3.7938 23 7 3.0111 -2.3139 4.9499 24 7 1.8099 -2.6189 5.2977 25 6 1.4334 -3.2864 6.5463 26 6 0.7286 -4.6063 6.2265 27 6 2.6894 -3.5665 7.3738 28 6 0.4888 -2.3837 7.3424 29 7 0.9903 -2.2448 4.3763 30 1 -0.3633 -1.0261 0.0562 31 1 -0.3633 0.5617 0.8606 32 1 -0.3634 0.4645 -0.9167 33 1 1.6049 -1.7245 -1.2922 34 1 1.7632 -0.1656 -2.1372 35 1 3.6345 1.2286 -0.7139 36 1 5.6771 3.8619 -0.8557 37 1 5.0450 -1.7625 0.0985 38 1 3.5038 -2.6487 0.0015 39 1 3.9921 0.0064 1.4287 40 1 3.6578 -1.5684 2.1937 41 1 1.4015 -5.2494 5.6593 42 1 0.4480 -5.1027 7.1555 43 1 -0.1663 -4.4068 5.6370 44 1 3.1915 -2.6262 7.6016 45 1 2.4092 -4.0627 8.3029 46 1 3.3623 -4.2095 6.8067 47 1 -0.4060 -2.1843 6.7528 48 1 0.2083 -2.8805 8.2712 49 1 0.9909 -1.4434 7.5702 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044606766.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:50 Heat of formation + Delta-G solvation = 132.455849 kcal Electronic energy + Delta-G solvation = -30612.553194 eV Core-core repulsion = 26614.543111 eV Total energy + Delta-G solvation = -3998.010083 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -44.49182 -40.23307 -37.98897 -37.39920 -34.30182 -33.55429 -33.21217 -31.87377 -31.69601 -29.05356 -28.11702 -28.07086 -27.06025 -25.44151 -24.68419 -23.86603 -23.32361 -21.81091 -20.97404 -20.20856 -18.64631 -17.48635 -17.30775 -17.13700 -16.59717 -15.84803 -15.28697 -14.76323 -14.74835 -14.62277 -14.29511 -14.07771 -13.84039 -13.52804 -13.40912 -13.16601 -13.06675 -12.97691 -12.85429 -12.56935 -12.36083 -12.26611 -12.06069 -12.00759 -11.93602 -11.71247 -11.44088 -11.23314 -11.07444 -10.98563 -10.81164 -10.74709 -10.55298 -10.39755 -10.23215 -9.95745 -9.88829 -9.59098 -9.11807 -8.86166 -8.16756 -6.93112 -5.73672 -3.02294 0.98425 1.48158 1.54052 2.87267 3.22547 3.46410 3.51201 3.51781 3.73327 4.01037 4.01602 4.11796 4.46656 4.62256 4.87150 4.91242 4.93107 5.06915 5.08875 5.13819 5.15009 5.31947 5.33901 5.41884 5.46417 5.50775 5.56832 5.64859 5.67234 5.70332 5.84471 5.87658 5.99627 6.01798 6.06473 6.22106 6.33607 6.44796 6.50383 6.60982 6.62266 6.79337 6.83860 6.94504 7.10162 7.61389 7.73152 8.08237 8.31710 8.44843 9.56133 10.12972 10.47922 11.48835 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015574 B = 0.003064 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.458547 B = 9137.245205 C =10191.279729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.147 3.853 3 H 0.087 0.913 4 C -0.133 4.133 5 C 0.172 3.828 6 H 0.051 0.949 7 N -0.721 5.721 8 C -0.238 4.238 9 H 0.070 0.930 10 C -0.012 4.012 11 N -0.933 5.933 12 Si 0.905 3.095 13 H -0.287 1.287 14 H -0.292 1.292 15 H -0.286 1.286 16 C -0.147 4.147 17 C 0.089 3.911 18 N -0.571 5.571 19 C 0.609 3.391 20 O -0.517 6.517 21 C 0.134 3.866 22 N -0.250 5.250 23 N -0.062 5.062 24 N -0.128 5.128 25 C 0.177 3.823 26 C -0.160 4.160 27 C -0.153 4.153 28 C -0.160 4.160 29 N -0.251 5.251 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.047 0.953 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.383 0.617 36 H 0.255 0.745 37 H 0.075 0.925 38 H 0.045 0.955 39 H 0.087 0.913 40 H 0.113 0.887 41 H 0.068 0.932 42 H 0.091 0.909 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.089 0.911 46 H 0.077 0.923 47 H 0.079 0.921 48 H 0.091 0.909 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.274 -15.111 16.487 24.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.045 3.955 3 H 0.105 0.895 4 C -0.172 4.172 5 C 0.062 3.938 6 H 0.069 0.931 7 N -0.364 5.364 8 C -0.369 4.369 9 H 0.087 0.913 10 C -0.208 4.208 11 N -0.581 5.581 12 Si 0.736 3.264 13 H -0.214 1.214 14 H -0.218 1.218 15 H -0.213 1.213 16 C -0.188 4.188 17 C -0.033 4.033 18 N -0.303 5.303 19 C 0.390 3.610 20 O -0.391 6.391 21 C -0.149 4.149 22 N -0.123 5.123 23 N -0.053 5.053 24 N -0.042 5.042 25 C 0.096 3.904 26 C -0.218 4.218 27 C -0.211 4.211 28 C -0.219 4.219 29 N -0.103 5.103 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.218 0.782 36 H 0.065 0.935 37 H 0.094 0.906 38 H 0.064 0.936 39 H 0.105 0.895 40 H 0.130 0.870 41 H 0.087 0.913 42 H 0.109 0.891 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.108 0.892 46 H 0.096 0.904 47 H 0.098 0.902 48 H 0.109 0.891 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -10.324 -15.210 16.760 24.876 hybrid contribution 0.775 0.634 -0.478 1.110 sum -9.549 -14.575 16.283 23.848 Atomic orbital electron populations 1.22246 0.93049 1.03355 1.00867 1.21389 0.94949 0.96113 0.83083 0.89539 1.22252 0.97541 1.00293 0.97078 1.20233 0.90325 0.88154 0.95098 0.93078 1.42490 1.13904 1.04644 1.75339 1.19184 0.89892 0.94078 1.33721 0.91253 1.24712 0.98200 0.95937 1.01966 1.69639 1.36550 1.00635 1.51305 0.86302 0.84878 0.76791 0.78401 1.21394 1.21825 1.21309 1.22515 1.01516 0.97739 0.97036 1.22526 0.77559 1.03218 1.00037 1.47982 1.08514 1.54909 1.18904 1.16318 0.85629 0.78843 0.80207 1.90867 1.14431 1.55657 1.78130 1.25627 0.87351 1.03371 0.98594 1.76116 1.17908 1.15144 1.03178 1.78933 1.05934 1.12084 1.08395 1.50708 1.02158 1.35721 1.15629 1.21480 0.98132 0.93201 0.77569 1.22252 1.01663 0.93870 1.04024 1.22102 0.95029 1.04279 0.99719 1.22258 0.99483 0.99596 1.00528 1.74955 1.22276 1.14595 0.98518 0.91268 0.91330 0.93472 0.91959 0.90456 0.78166 0.93500 0.90643 0.93597 0.89494 0.87007 0.91278 0.89055 0.90257 0.90434 0.89189 0.90447 0.90231 0.89060 0.91243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 7.60 37.16 0.28 -1.92 16 2 C 0.15 2.54 3.19 -67.60 -0.22 2.33 16 3 H 0.09 1.67 6.64 -51.93 -0.34 1.32 16 4 C -0.13 -2.24 5.07 -26.61 -0.13 -2.37 16 5 C 0.17 3.34 3.10 -67.86 -0.21 3.13 16 6 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 7 N -0.72 -17.29 4.31 -53.36 -0.23 -17.52 16 8 C -0.24 -6.39 9.93 -15.06 -0.15 -6.54 16 9 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 10 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 11 N -0.93 -27.73 13.06 55.49 0.72 -27.01 16 12 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 13 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 C -0.15 -2.63 5.78 -26.58 -0.15 -2.78 16 17 C 0.09 1.61 5.87 -3.71 -0.02 1.59 16 18 N -0.57 -10.04 2.97 -166.26 -0.49 -10.53 16 19 C 0.61 10.79 7.62 -12.26 -0.09 10.69 16 20 O -0.52 -9.70 12.52 5.34 0.07 -9.63 16 21 C 0.13 2.23 7.81 -156.25 -1.22 1.01 16 22 N -0.25 -4.06 9.04 32.10 0.29 -3.77 16 23 N -0.06 -0.87 12.21 60.35 0.74 -0.13 16 24 N -0.13 -1.55 3.72 0.53 0.00 -1.55 16 25 C 0.18 1.30 1.30 -131.82 -0.17 1.13 16 26 C -0.16 -0.93 8.66 37.16 0.32 -0.61 16 27 C -0.15 -0.84 7.90 37.16 0.29 -0.55 16 28 C -0.16 -0.97 8.66 37.16 0.32 -0.64 16 29 N -0.25 -3.70 11.86 32.11 0.38 -3.32 16 30 H 0.07 1.14 6.76 -51.93 -0.35 0.79 16 31 H 0.07 1.16 6.75 -51.93 -0.35 0.81 16 32 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.38 9.79 6.06 -40.82 -0.25 9.54 16 36 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 37 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 38 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 1.82 7.74 -51.93 -0.40 1.42 16 40 H 0.11 1.95 4.12 -71.35 -0.29 1.65 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 43 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 46 H 0.08 0.47 8.14 -51.94 -0.42 0.05 16 47 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 49 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 384.82 15.07 5.80 5.80 Total: -1.00 -31.99 384.82 -6.87 -38.86 By element: Atomic # 1 Polarization: 15.44 SS G_CDS: -7.87 Total: 7.57 kcal Atomic # 6 Polarization: 5.29 SS G_CDS: -1.25 Total: 4.04 kcal Atomic # 7 Polarization: -65.25 SS G_CDS: 1.41 Total: -63.84 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: 0.07 Total: -9.63 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.99 -6.87 -38.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044606766.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.314 kcal (2) G-P(sol) polarization free energy of solvation -31.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.324 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.858 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds