Wall clock time and date at job start Tue Mar 31 2020 21:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 109.58749 * 2 1 4 4 C 1.53194 * 109.58562 * 239.72351 * 2 1 3 5 5 C 1.53042 * 109.33942 * 185.41913 * 4 2 1 6 6 H 1.08995 * 109.45866 * 181.39966 * 5 4 2 7 7 N 1.46501 * 109.45690 * 301.35610 * 5 4 2 8 8 C 1.36941 * 119.99721 * 205.00233 * 7 5 4 9 9 H 1.07997 * 120.00131 * 359.97438 * 8 7 5 10 10 C 1.38811 * 119.99599 * 180.02562 * 8 7 5 11 11 N 1.31622 * 120.00479 * 359.97438 * 10 8 7 12 12 Si 1.86808 * 119.99730 * 179.97438 * 10 8 7 13 13 H 1.48495 * 109.47059 * 60.00097 * 12 10 8 14 14 H 1.48502 * 109.46772 * 180.02562 * 12 10 8 15 15 H 1.48495 * 109.46945 * 300.00017 * 12 10 8 16 16 C 1.53098 * 109.50310 * 61.34392 * 5 4 2 17 17 C 1.53192 * 109.33527 * 298.65395 * 16 5 4 18 18 N 1.46920 * 109.70636 * 120.36015 * 2 1 3 19 19 C 1.34776 * 120.63287 * 353.44050 * 18 2 1 20 20 O 1.21532 * 119.99664 * 6.34763 * 19 18 2 21 21 C 1.48004 * 120.00173 * 186.34535 * 19 18 2 22 22 N 1.34182 * 126.69942 * 6.96672 * 21 19 18 23 23 N 1.28986 * 107.25158 * 179.83373 * 22 21 19 24 24 N 1.28719 * 108.98433 * 0.42991 * 23 22 21 25 25 C 1.46508 * 125.31486 * 179.75989 * 24 23 22 26 26 C 1.52998 * 109.46936 * 239.95878 * 25 24 23 27 27 C 1.52998 * 109.47164 * 359.95576 * 25 24 23 28 28 C 1.53004 * 109.46877 * 119.95966 * 25 24 23 29 29 N 1.28862 * 109.36425 * 359.72668 * 24 23 22 30 30 H 1.08995 * 109.46872 * 183.13368 * 1 2 3 31 31 H 1.09004 * 109.46946 * 303.13075 * 1 2 3 32 32 H 1.09000 * 109.47214 * 63.13068 * 1 2 3 33 33 H 1.08998 * 109.49243 * 305.38265 * 4 2 1 34 34 H 1.08997 * 109.49765 * 65.44660 * 4 2 1 35 35 H 0.96997 * 120.00466 * 25.00564 * 7 5 4 36 36 H 0.96996 * 120.00399 * 179.97438 * 11 10 8 37 37 H 1.09006 * 109.48802 * 178.70038 * 16 5 4 38 38 H 1.08997 * 109.49259 * 58.61820 * 16 5 4 39 39 H 1.08995 * 109.59111 * 294.85360 * 17 16 5 40 40 H 1.08995 * 109.58957 * 174.42239 * 17 16 5 41 41 H 1.09003 * 109.47352 * 60.00149 * 26 25 24 42 42 H 1.09002 * 109.47133 * 180.02562 * 26 25 24 43 43 H 1.09002 * 109.47277 * 299.99853 * 26 25 24 44 44 H 1.08999 * 109.46836 * 60.00366 * 27 25 24 45 45 H 1.08997 * 109.46930 * 179.97438 * 27 25 24 46 46 H 1.08988 * 109.47768 * 300.00211 * 27 25 24 47 47 H 1.09003 * 109.46673 * 59.99837 * 28 25 24 48 48 H 1.08999 * 109.46634 * 179.97438 * 28 25 24 49 49 H 1.09000 * 109.46854 * 299.99666 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7277 -1.2464 5 6 3.5679 -0.8432 -1.1739 6 1 3.9376 -1.3386 -2.0716 7 7 4.1548 0.4957 -1.0788 8 6 5.4380 0.7126 -1.5049 9 1 6.0174 -0.1034 -1.9107 10 6 5.9943 1.9811 -1.4143 11 7 5.2883 2.9756 -0.9193 12 14 7.7450 2.2769 -1.9950 13 1 7.8515 1.9407 -3.4375 14 1 8.0994 3.7046 -1.7915 15 1 8.6758 1.4205 -1.2170 16 6 3.9603 -1.6607 0.0596 17 6 3.4687 -0.9436 1.3209 18 7 2.0254 -0.6991 1.1935 19 6 1.1724 -1.1079 2.1535 20 8 -0.0267 -1.0036 1.9854 21 6 1.6959 -1.6838 3.4124 22 7 2.9810 -1.7427 3.7938 23 7 3.0111 -2.3139 4.9499 24 7 1.8099 -2.6189 5.2977 25 6 1.4334 -3.2864 6.5463 26 6 0.7286 -4.6063 6.2265 27 6 2.6894 -3.5665 7.3738 28 6 0.4888 -2.3837 7.3424 29 7 0.9903 -2.2448 4.3763 30 1 -0.3633 -1.0261 0.0562 31 1 -0.3633 0.5617 0.8606 32 1 -0.3634 0.4645 -0.9167 33 1 1.6049 -1.7245 -1.2922 34 1 1.7632 -0.1656 -2.1372 35 1 3.6345 1.2286 -0.7139 36 1 5.6771 3.8619 -0.8557 37 1 5.0450 -1.7625 0.0985 38 1 3.5038 -2.6487 0.0015 39 1 3.9921 0.0064 1.4287 40 1 3.6578 -1.5684 2.1937 41 1 1.4015 -5.2494 5.6593 42 1 0.4480 -5.1027 7.1555 43 1 -0.1663 -4.4068 5.6370 44 1 3.1915 -2.6262 7.6016 45 1 2.4092 -4.0627 8.3029 46 1 3.3623 -4.2095 6.8067 47 1 -0.4060 -2.1843 6.7528 48 1 0.2083 -2.8805 8.2712 49 1 0.9909 -1.4434 7.5702 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044606766.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:47 Heat of formation + Delta-G solvation = 112.077328 kcal Electronic energy + Delta-G solvation = -30613.436873 eV Core-core repulsion = 26614.543111 eV Total energy + Delta-G solvation = -3998.893762 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -45.61260 -41.64991 -38.97990 -38.62814 -35.98163 -34.72373 -34.48527 -33.68661 -32.90312 -30.88256 -28.75498 -28.53206 -28.38998 -26.60649 -25.83899 -25.64006 -24.94926 -23.14435 -22.04345 -21.45628 -20.08911 -19.19121 -18.56732 -18.29140 -17.71516 -17.26432 -16.80150 -16.29659 -15.85954 -15.69097 -15.59221 -15.27658 -15.16776 -14.93125 -14.76543 -14.51756 -14.16713 -14.00944 -13.51892 -13.48672 -13.43087 -13.24350 -13.22552 -12.97997 -12.88130 -12.84562 -12.73114 -12.61465 -12.53781 -12.35598 -12.16091 -12.13569 -12.10646 -11.97754 -11.67643 -11.53355 -11.39053 -11.34741 -10.81235 -10.49901 -9.64607 -8.93189 -7.87499 -5.14657 -0.15425 0.23885 0.66402 1.50525 1.52642 1.58183 1.59079 1.86333 2.61147 2.69360 2.92137 3.45909 3.48799 3.49502 3.62609 3.77095 3.87647 3.97575 4.04642 4.09432 4.20898 4.38054 4.42189 4.42689 4.48088 4.52857 4.58007 4.60766 4.62709 4.72601 4.72947 4.84151 4.93657 5.02004 5.02086 5.05552 5.11300 5.14245 5.18634 5.20535 5.22814 5.30407 5.35447 5.41857 5.59840 5.67339 6.19740 6.34270 6.76453 7.07596 7.41302 8.17071 8.40629 9.35729 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015574 B = 0.003064 C = 0.002747 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.458547 B = 9137.245205 C =10191.279729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.146 3.854 3 H 0.061 0.939 4 C -0.122 4.122 5 C 0.166 3.834 6 H 0.054 0.946 7 N -0.730 5.730 8 C -0.231 4.231 9 H 0.076 0.924 10 C -0.075 4.075 11 N -0.970 5.970 12 Si 0.966 3.034 13 H -0.279 1.279 14 H -0.301 1.301 15 H -0.280 1.280 16 C -0.138 4.138 17 C 0.100 3.900 18 N -0.572 5.572 19 C 0.610 3.390 20 O -0.529 6.529 21 C 0.116 3.884 22 N -0.272 5.272 23 N -0.063 5.063 24 N -0.107 5.107 25 C 0.158 3.842 26 C -0.156 4.156 27 C -0.150 4.150 28 C -0.157 4.157 29 N -0.253 5.253 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.373 0.627 36 H 0.248 0.752 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.052 0.948 40 H 0.123 0.877 41 H 0.062 0.938 42 H 0.130 0.870 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.129 0.871 46 H 0.069 0.931 47 H 0.064 0.936 48 H 0.131 0.869 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.782 -17.575 17.734 27.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.044 3.956 3 H 0.079 0.921 4 C -0.160 4.160 5 C 0.058 3.942 6 H 0.072 0.928 7 N -0.371 5.371 8 C -0.363 4.363 9 H 0.094 0.906 10 C -0.267 4.267 11 N -0.621 5.621 12 Si 0.796 3.204 13 H -0.206 1.206 14 H -0.228 1.228 15 H -0.206 1.206 16 C -0.179 4.179 17 C -0.023 4.023 18 N -0.303 5.303 19 C 0.392 3.608 20 O -0.405 6.405 21 C -0.168 4.168 22 N -0.145 5.145 23 N -0.054 5.054 24 N -0.024 5.024 25 C 0.080 3.920 26 C -0.214 4.214 27 C -0.208 4.208 28 C -0.216 4.216 29 N -0.107 5.107 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.206 0.794 36 H 0.057 0.943 37 H 0.084 0.916 38 H 0.089 0.911 39 H 0.070 0.930 40 H 0.140 0.860 41 H 0.081 0.919 42 H 0.148 0.852 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.147 0.853 46 H 0.088 0.912 47 H 0.083 0.917 48 H 0.149 0.851 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -10.828 -17.731 18.004 27.492 hybrid contribution 0.846 1.274 -0.704 1.684 sum -9.982 -16.456 17.301 25.880 Atomic orbital electron populations 1.22099 0.91664 1.03190 1.01221 1.21357 0.95890 0.94931 0.83393 0.92083 1.22151 0.95525 1.01539 0.96806 1.20463 0.91921 0.86138 0.95727 0.92841 1.42646 1.13167 1.06228 1.75056 1.19567 0.90923 0.93998 1.31770 0.90562 1.25447 1.01821 0.96072 1.03369 1.69802 1.38051 1.00678 1.53569 0.85310 0.80847 0.75991 0.78204 1.20573 1.22762 1.20624 1.22391 1.01051 0.98556 0.95893 1.22339 0.77650 1.01564 1.00760 1.47949 1.08222 1.55008 1.19165 1.16410 0.85439 0.78501 0.80444 1.90853 1.14841 1.56220 1.78546 1.25389 0.87768 1.04779 0.98856 1.76008 1.18094 1.16146 1.04280 1.78855 1.06729 1.12084 1.07775 1.51348 1.01267 1.33861 1.15959 1.22249 0.99722 0.93967 0.76094 1.22302 1.00536 0.92813 1.05751 1.22178 0.93855 1.03984 1.00815 1.22312 0.98193 0.99362 1.01691 1.74919 1.22654 1.14467 0.98660 0.91351 0.92674 0.91602 0.89630 0.90090 0.79364 0.94335 0.91629 0.91057 0.92999 0.85991 0.91933 0.85159 0.91664 0.91474 0.85314 0.91164 0.91697 0.85099 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.91 7.60 71.98 0.55 -3.36 16 2 C 0.15 5.09 3.19 44.98 0.14 5.24 16 3 H 0.06 2.45 6.64 -2.39 -0.02 2.43 16 4 C -0.12 -3.96 5.07 30.67 0.16 -3.81 16 5 C 0.17 6.35 3.10 45.04 0.14 6.49 16 6 H 0.05 2.04 8.08 -2.39 -0.02 2.02 16 7 N -0.73 -35.47 4.31 -322.72 -1.39 -36.86 16 8 C -0.23 -12.46 9.93 84.03 0.83 -11.63 16 9 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 10 C -0.08 -4.27 5.50 84.86 0.47 -3.80 16 11 N -0.97 -59.27 13.06 21.65 0.28 -58.98 16 12 Si 0.97 46.24 29.55 68.60 2.03 48.27 16 13 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 14 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 15 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 16 C -0.14 -4.85 5.78 30.69 0.18 -4.67 16 17 C 0.10 3.66 5.87 86.36 0.51 4.17 16 18 N -0.57 -20.28 2.97 -798.22 -2.37 -22.65 16 19 C 0.61 21.72 7.62 86.83 0.66 22.38 16 20 O -0.53 -19.84 12.52 -3.82 -0.05 -19.89 16 21 C 0.12 3.85 7.81 137.15 1.07 4.92 16 22 N -0.27 -8.92 9.04 -52.37 -0.47 -9.39 16 23 N -0.06 -1.75 12.21 37.02 0.45 -1.30 16 24 N -0.11 -2.52 3.72 -152.25 -0.57 -3.09 16 25 C 0.16 2.00 1.30 3.60 0.00 2.00 16 26 C -0.16 -1.40 8.66 71.98 0.62 -0.77 16 27 C -0.15 -1.26 7.90 71.98 0.57 -0.69 16 28 C -0.16 -1.54 8.66 71.98 0.62 -0.91 16 29 N -0.25 -7.38 11.86 -52.32 -0.62 -8.00 16 30 H 0.07 2.17 6.76 -2.39 -0.02 2.15 16 31 H 0.05 1.87 6.75 -2.38 -0.02 1.86 16 32 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 34 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.37 19.67 6.06 -92.71 -0.56 19.11 16 36 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 37 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 38 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.05 2.27 7.74 -2.39 -0.02 2.25 16 40 H 0.12 4.30 4.12 -27.49 -0.11 4.18 16 41 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.13 0.16 8.14 -2.39 -0.02 0.14 16 43 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.13 0.09 8.14 -2.39 -0.02 0.07 16 46 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.13 0.24 8.14 -2.39 -0.02 0.22 16 49 H 0.06 0.71 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -70.70 384.82 4.11 -66.59 By element: Atomic # 1 Polarization: 29.45 SS G_CDS: 0.29 Total: 29.75 kcal Atomic # 6 Polarization: 9.02 SS G_CDS: 6.53 Total: 15.55 kcal Atomic # 7 Polarization: -135.57 SS G_CDS: -4.69 Total: -140.26 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: -0.05 Total: -19.89 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -70.70 4.11 -66.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044606766.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.670 kcal (2) G-P(sol) polarization free energy of solvation -70.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds