Wall clock time and date at job start Tue Mar 31 2020 21:15:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.70114 * 2 1 4 4 C 1.53190 * 109.58972 * 120.35469 * 2 1 3 5 5 C 1.53042 * 109.31697 * 174.42515 * 4 2 1 6 6 H 1.08994 * 109.45788 * 58.64301 * 5 4 2 7 7 N 1.46499 * 109.45935 * 178.61598 * 5 4 2 8 8 C 1.36936 * 119.99931 * 204.99969 * 7 5 4 9 9 H 1.07999 * 120.00035 * 359.97438 * 8 7 5 10 10 C 1.38812 * 120.00082 * 180.02562 * 8 7 5 11 11 N 1.31620 * 119.99952 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00122 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47164 * 89.99552 * 12 10 8 14 14 H 1.48494 * 109.47537 * 209.99861 * 12 10 8 15 15 H 1.48502 * 109.46821 * 329.99897 * 12 10 8 16 16 C 1.53041 * 109.53633 * 298.63504 * 5 4 2 17 17 C 1.52764 * 109.38102 * 61.23828 * 16 5 4 18 18 N 1.46918 * 109.01086 * 305.58752 * 17 16 5 19 19 C 1.34782 * 120.63360 * 233.58425 * 18 17 16 20 20 O 1.21537 * 120.00110 * 185.10951 * 19 18 17 21 21 C 1.48002 * 119.99390 * 5.11047 * 19 18 17 22 22 N 1.34183 * 126.70278 * 353.06575 * 21 19 18 23 23 N 1.28988 * 107.25495 * 179.97438 * 22 21 19 24 24 N 1.28722 * 108.98522 * 359.97438 * 23 22 21 25 25 C 1.46500 * 125.31951 * 179.73280 * 24 23 22 26 26 C 1.53008 * 109.46883 * 0.02816 * 25 24 23 27 27 C 1.52994 * 109.47233 * 120.02765 * 25 24 23 28 28 C 1.53002 * 109.47263 * 240.02854 * 25 24 23 29 29 N 1.28869 * 109.35828 * 0.02562 * 24 23 22 30 30 H 1.08994 * 109.46771 * 173.04677 * 1 2 3 31 31 H 1.08996 * 109.47245 * 293.05046 * 1 2 3 32 32 H 1.09001 * 109.46600 * 53.04743 * 1 2 3 33 33 H 1.09009 * 109.49499 * 294.37962 * 4 2 1 34 34 H 1.08999 * 109.49535 * 54.43899 * 4 2 1 35 35 H 0.96999 * 120.00227 * 24.99667 * 7 5 4 36 36 H 0.96999 * 119.99622 * 180.02562 * 11 10 8 37 37 H 1.08999 * 109.49887 * 181.31435 * 16 5 4 38 38 H 1.09006 * 109.49566 * 301.41589 * 16 5 4 39 39 H 1.09000 * 109.50506 * 185.70632 * 17 16 5 40 40 H 1.08999 * 109.43226 * 65.42841 * 17 16 5 41 41 H 1.08997 * 109.46879 * 59.99885 * 26 25 24 42 42 H 1.08998 * 109.46727 * 179.97438 * 26 25 24 43 43 H 1.08993 * 109.47120 * 299.99951 * 26 25 24 44 44 H 1.09005 * 109.47373 * 59.99710 * 27 25 24 45 45 H 1.09001 * 109.47834 * 180.02562 * 27 25 24 46 46 H 1.09011 * 109.47080 * 300.00347 * 27 25 24 47 47 H 1.09000 * 109.46739 * 60.00381 * 28 25 24 48 48 H 1.09001 * 109.46938 * 179.97438 * 28 25 24 49 49 H 1.08999 * 109.47254 * 299.99997 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7293 1.2454 5 6 3.5676 -0.8479 1.1702 6 1 4.0061 0.1474 1.0991 7 7 4.0652 -1.5157 2.3754 8 6 5.3497 -1.2986 2.7975 9 1 5.9960 -0.6355 2.2417 10 6 5.8214 -1.9318 3.9392 11 7 5.0340 -2.7403 4.6163 12 14 7.5739 -1.6362 4.5147 13 1 7.6008 -0.4797 5.4457 14 1 8.0761 -2.8463 5.2137 15 1 8.4379 -1.3477 3.3418 16 6 3.9570 -1.6656 -0.0634 17 6 3.4645 -0.9518 -1.3210 18 7 2.0227 -0.6995 -1.1945 19 6 1.1674 -1.1069 -2.1532 20 8 -0.0095 -0.8117 -2.0831 21 6 1.6616 -1.9138 -3.2913 22 7 2.9409 -2.2055 -3.5719 23 7 2.9431 -2.9272 -4.6410 24 7 1.7293 -3.0963 -5.0346 25 6 1.3210 -3.8561 -6.2188 26 6 2.5611 -4.4191 -6.9161 27 6 0.4069 -5.0077 -5.7956 28 6 0.5686 -2.9351 -7.1814 29 7 0.9298 -2.4876 -4.2278 30 1 -0.3632 -1.0201 -0.1244 31 1 -0.3633 0.4024 0.9456 32 1 -0.3632 0.6178 -0.8213 33 1 1.7660 -0.1668 2.1368 34 1 1.6026 -1.7251 1.2916 35 1 3.4849 -2.1115 2.8745 36 1 5.3635 -3.1824 5.4143 37 1 5.0413 -1.7694 -0.1037 38 1 3.4984 -2.6528 -0.0052 39 1 3.6505 -1.5797 -2.1924 40 1 3.9929 -0.0048 -1.4310 41 1 3.0971 -5.0752 -6.2303 42 1 2.2573 -4.9848 -7.7968 43 1 3.2123 -3.5987 -7.2176 44 1 -0.4765 -4.6067 -5.2987 45 1 0.1034 -5.5734 -6.6765 46 1 0.9430 -5.6639 -5.1098 47 1 1.2199 -2.1147 -7.4829 48 1 0.2652 -3.5004 -8.0626 49 1 -0.3148 -2.5340 -6.6846 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044606768.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:54 Heat of formation + Delta-G solvation = 130.422228 kcal Electronic energy + Delta-G solvation = -30161.930861 eV Core-core repulsion = 26163.832594 eV Total energy + Delta-G solvation = -3998.098267 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -44.61221 -40.35588 -38.05581 -37.40116 -34.58659 -33.71567 -33.35965 -31.90526 -31.82351 -29.27988 -28.17378 -28.12353 -27.06849 -25.58159 -24.79618 -24.09319 -22.77315 -21.84194 -21.06369 -20.21480 -19.32399 -17.59350 -17.47426 -17.05893 -16.81565 -16.05712 -15.37416 -14.88005 -14.81916 -14.69279 -14.48056 -14.20971 -13.75438 -13.55659 -13.49097 -13.25876 -13.08774 -13.01323 -12.87579 -12.69622 -12.48872 -12.41217 -12.13518 -12.06835 -12.00175 -11.70770 -11.56087 -11.45712 -11.18788 -10.95552 -10.87145 -10.75166 -10.62409 -10.50954 -10.19758 -10.10675 -9.82086 -9.67176 -9.28281 -8.84457 -8.45331 -6.93107 -5.74069 -3.02786 0.87628 1.34182 1.43662 2.68778 3.09240 3.45310 3.50536 3.52141 3.64716 3.83549 3.95056 4.05684 4.35209 4.60496 4.76491 4.85699 4.87629 4.94997 5.03445 5.08069 5.09596 5.16444 5.22033 5.30986 5.37928 5.43409 5.50392 5.51953 5.58346 5.63667 5.65769 5.79636 5.89900 5.92061 6.03647 6.14523 6.24555 6.38490 6.43106 6.51615 6.57046 6.59398 6.77921 6.97136 7.12774 7.40317 7.72510 7.93513 8.17220 8.44369 9.55521 10.13434 10.48238 11.48649 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015806 B = 0.002741 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.009404 B =10214.091166 C =11368.588547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.149 3.851 3 H 0.078 0.922 4 C -0.135 4.135 5 C 0.177 3.823 6 H 0.049 0.951 7 N -0.724 5.724 8 C -0.237 4.237 9 H 0.071 0.929 10 C -0.015 4.015 11 N -0.933 5.933 12 Si 0.906 3.094 13 H -0.290 1.290 14 H -0.292 1.292 15 H -0.282 1.282 16 C -0.146 4.146 17 C 0.068 3.932 18 N -0.576 5.576 19 C 0.611 3.389 20 O -0.512 6.512 21 C 0.135 3.865 22 N -0.254 5.254 23 N -0.058 5.058 24 N -0.125 5.125 25 C 0.176 3.824 26 C -0.154 4.154 27 C -0.161 4.161 28 C -0.160 4.160 29 N -0.249 5.249 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.383 0.617 36 H 0.254 0.746 37 H 0.077 0.923 38 H 0.056 0.944 39 H 0.133 0.867 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.092 0.908 46 H 0.069 0.931 47 H 0.068 0.932 48 H 0.091 0.909 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.056 -1.470 -25.840 27.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.046 3.954 3 H 0.096 0.904 4 C -0.174 4.174 5 C 0.067 3.933 6 H 0.067 0.933 7 N -0.364 5.364 8 C -0.368 4.368 9 H 0.089 0.911 10 C -0.210 4.210 11 N -0.582 5.582 12 Si 0.737 3.263 13 H -0.218 1.218 14 H -0.219 1.219 15 H -0.207 1.207 16 C -0.187 4.187 17 C -0.056 4.056 18 N -0.309 5.309 19 C 0.393 3.607 20 O -0.386 6.386 21 C -0.149 4.149 22 N -0.128 5.128 23 N -0.050 5.050 24 N -0.039 5.039 25 C 0.096 3.904 26 C -0.212 4.212 27 C -0.219 4.219 28 C -0.218 4.218 29 N -0.101 5.101 30 H 0.084 0.916 31 H 0.069 0.931 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.217 0.783 36 H 0.064 0.936 37 H 0.095 0.905 38 H 0.075 0.925 39 H 0.149 0.851 40 H 0.086 0.914 41 H 0.096 0.904 42 H 0.109 0.891 43 H 0.095 0.905 44 H 0.098 0.902 45 H 0.110 0.890 46 H 0.088 0.912 47 H 0.087 0.913 48 H 0.110 0.890 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.100 -1.558 -26.142 28.069 hybrid contribution 0.719 -0.005 0.920 1.168 sum -9.380 -1.563 -25.223 26.956 Atomic orbital electron populations 1.22226 0.92801 1.03694 1.01031 1.21435 0.95474 0.95338 0.83134 0.90385 1.22310 0.97812 1.00980 0.96267 1.20215 0.90732 0.95129 0.87260 0.93344 1.42424 1.12895 1.54380 1.26717 1.19242 0.89098 1.22051 1.06388 0.91134 1.24743 0.98130 0.99900 0.98270 1.69666 1.35391 1.33646 1.19492 0.86206 0.84586 0.77027 0.78484 1.21774 1.21863 1.20740 1.22535 1.01826 0.99804 0.94544 1.22844 0.77845 1.02171 1.02709 1.48021 1.08334 1.55433 1.19082 1.16299 0.85322 0.79158 0.79931 1.90875 1.16053 1.56182 1.75440 1.25574 0.87105 1.03142 0.99067 1.75808 1.18487 1.11792 1.06689 1.78931 1.05139 1.13268 1.07652 1.50719 1.02002 1.31610 1.19612 1.21520 0.97854 0.91400 0.79652 1.22114 0.95236 1.02635 1.01184 1.22266 0.99766 0.96292 1.03604 1.22257 1.01259 0.99554 0.98750 1.74966 1.22790 1.10109 1.02274 0.91595 0.93147 0.90790 0.90301 0.91733 0.78310 0.93564 0.90472 0.92529 0.85089 0.91392 0.90371 0.89105 0.90465 0.90217 0.88969 0.91170 0.91295 0.88979 0.90210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 7.61 37.16 0.28 -1.73 16 2 C 0.15 2.22 3.49 -67.60 -0.24 1.98 16 3 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 4 C -0.13 -2.29 4.84 -26.61 -0.13 -2.42 16 5 C 0.18 3.49 2.73 -67.89 -0.19 3.30 16 6 H 0.05 0.96 8.08 -51.93 -0.42 0.55 16 7 N -0.72 -18.09 5.12 -53.39 -0.27 -18.36 16 8 C -0.24 -6.52 9.93 -15.06 -0.15 -6.67 16 9 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 10 C -0.01 -0.42 5.50 -17.43 -0.10 -0.51 16 11 N -0.93 -28.34 13.06 55.49 0.72 -27.62 16 12 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 13 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 14 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 16 C -0.15 -2.65 5.64 -26.83 -0.15 -2.80 16 17 C 0.07 1.03 6.30 -3.93 -0.02 1.01 16 18 N -0.58 -8.88 2.98 -166.53 -0.50 -9.38 16 19 C 0.61 9.83 7.52 -12.26 -0.09 9.74 16 20 O -0.51 -8.88 12.66 5.33 0.07 -8.81 16 21 C 0.14 2.05 7.89 -156.25 -1.23 0.82 16 22 N -0.25 -3.73 8.90 32.10 0.29 -3.44 16 23 N -0.06 -0.75 12.21 60.35 0.74 -0.01 16 24 N -0.12 -1.39 3.72 0.53 0.00 -1.39 16 25 C 0.18 1.17 1.30 -131.82 -0.17 1.00 16 26 C -0.15 -0.74 7.90 37.16 0.29 -0.44 16 27 C -0.16 -0.88 8.66 37.15 0.32 -0.56 16 28 C -0.16 -0.81 8.66 37.16 0.32 -0.49 16 29 N -0.25 -3.41 11.86 32.11 0.38 -3.03 16 30 H 0.07 1.04 6.83 -51.93 -0.35 0.69 16 31 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 1.09 6.66 -51.93 -0.35 0.75 16 33 H 0.08 1.33 8.14 -51.92 -0.42 0.91 16 34 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.38 10.28 7.80 -40.82 -0.32 9.96 16 36 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 37 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 39 H 0.13 2.00 3.68 -115.92 -0.43 1.57 16 40 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 43 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 46 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 47 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 49 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 388.80 15.07 5.86 5.86 Total: -1.00 -32.99 388.80 -7.16 -40.15 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -8.17 Total: 6.40 kcal Atomic # 6 Polarization: 3.47 SS G_CDS: -1.25 Total: 2.22 kcal Atomic # 7 Polarization: -64.60 SS G_CDS: 1.36 Total: -63.23 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.07 Total: -8.81 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.99 -7.16 -40.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044606768.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.574 kcal (2) G-P(sol) polarization free energy of solvation -32.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds