Wall clock time and date at job start Tue Mar 31 2020 21:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.70114 * 2 1 4 4 C 1.53190 * 109.58972 * 120.35469 * 2 1 3 5 5 C 1.53042 * 109.31697 * 174.42515 * 4 2 1 6 6 H 1.08994 * 109.45788 * 58.64301 * 5 4 2 7 7 N 1.46499 * 109.45935 * 178.61598 * 5 4 2 8 8 C 1.36936 * 119.99931 * 204.99969 * 7 5 4 9 9 H 1.07999 * 120.00035 * 359.97438 * 8 7 5 10 10 C 1.38812 * 120.00082 * 180.02562 * 8 7 5 11 11 N 1.31620 * 119.99952 * 359.97438 * 10 8 7 12 12 Si 1.86799 * 120.00122 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47164 * 89.99552 * 12 10 8 14 14 H 1.48494 * 109.47537 * 209.99861 * 12 10 8 15 15 H 1.48502 * 109.46821 * 329.99897 * 12 10 8 16 16 C 1.53041 * 109.53633 * 298.63504 * 5 4 2 17 17 C 1.52764 * 109.38102 * 61.23828 * 16 5 4 18 18 N 1.46918 * 109.01086 * 305.58752 * 17 16 5 19 19 C 1.34782 * 120.63360 * 233.58425 * 18 17 16 20 20 O 1.21537 * 120.00110 * 185.10951 * 19 18 17 21 21 C 1.48002 * 119.99390 * 5.11047 * 19 18 17 22 22 N 1.34183 * 126.70278 * 353.06575 * 21 19 18 23 23 N 1.28988 * 107.25495 * 179.97438 * 22 21 19 24 24 N 1.28722 * 108.98522 * 359.97438 * 23 22 21 25 25 C 1.46500 * 125.31951 * 179.73280 * 24 23 22 26 26 C 1.53008 * 109.46883 * 0.02816 * 25 24 23 27 27 C 1.52994 * 109.47233 * 120.02765 * 25 24 23 28 28 C 1.53002 * 109.47263 * 240.02854 * 25 24 23 29 29 N 1.28869 * 109.35828 * 0.02562 * 24 23 22 30 30 H 1.08994 * 109.46771 * 173.04677 * 1 2 3 31 31 H 1.08996 * 109.47245 * 293.05046 * 1 2 3 32 32 H 1.09001 * 109.46600 * 53.04743 * 1 2 3 33 33 H 1.09009 * 109.49499 * 294.37962 * 4 2 1 34 34 H 1.08999 * 109.49535 * 54.43899 * 4 2 1 35 35 H 0.96999 * 120.00227 * 24.99667 * 7 5 4 36 36 H 0.96999 * 119.99622 * 180.02562 * 11 10 8 37 37 H 1.08999 * 109.49887 * 181.31435 * 16 5 4 38 38 H 1.09006 * 109.49566 * 301.41589 * 16 5 4 39 39 H 1.09000 * 109.50506 * 185.70632 * 17 16 5 40 40 H 1.08999 * 109.43226 * 65.42841 * 17 16 5 41 41 H 1.08997 * 109.46879 * 59.99885 * 26 25 24 42 42 H 1.08998 * 109.46727 * 179.97438 * 26 25 24 43 43 H 1.08993 * 109.47120 * 299.99951 * 26 25 24 44 44 H 1.09005 * 109.47373 * 59.99710 * 27 25 24 45 45 H 1.09001 * 109.47834 * 180.02562 * 27 25 24 46 46 H 1.09011 * 109.47080 * 300.00347 * 27 25 24 47 47 H 1.09000 * 109.46739 * 60.00381 * 28 25 24 48 48 H 1.09001 * 109.46938 * 179.97438 * 28 25 24 49 49 H 1.08999 * 109.47254 * 299.99997 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7293 1.2454 5 6 3.5676 -0.8479 1.1702 6 1 4.0061 0.1474 1.0991 7 7 4.0652 -1.5157 2.3754 8 6 5.3497 -1.2986 2.7975 9 1 5.9960 -0.6355 2.2417 10 6 5.8214 -1.9318 3.9392 11 7 5.0340 -2.7403 4.6163 12 14 7.5739 -1.6362 4.5147 13 1 7.6008 -0.4797 5.4457 14 1 8.0761 -2.8463 5.2137 15 1 8.4379 -1.3477 3.3418 16 6 3.9570 -1.6656 -0.0634 17 6 3.4645 -0.9518 -1.3210 18 7 2.0227 -0.6995 -1.1945 19 6 1.1674 -1.1069 -2.1532 20 8 -0.0095 -0.8117 -2.0831 21 6 1.6616 -1.9138 -3.2913 22 7 2.9409 -2.2055 -3.5719 23 7 2.9431 -2.9272 -4.6410 24 7 1.7293 -3.0963 -5.0346 25 6 1.3210 -3.8561 -6.2188 26 6 2.5611 -4.4191 -6.9161 27 6 0.4069 -5.0077 -5.7956 28 6 0.5686 -2.9351 -7.1814 29 7 0.9298 -2.4876 -4.2278 30 1 -0.3632 -1.0201 -0.1244 31 1 -0.3633 0.4024 0.9456 32 1 -0.3632 0.6178 -0.8213 33 1 1.7660 -0.1668 2.1368 34 1 1.6026 -1.7251 1.2916 35 1 3.4849 -2.1115 2.8745 36 1 5.3635 -3.1824 5.4143 37 1 5.0413 -1.7694 -0.1037 38 1 3.4984 -2.6528 -0.0052 39 1 3.6505 -1.5797 -2.1924 40 1 3.9929 -0.0048 -1.4310 41 1 3.0971 -5.0752 -6.2303 42 1 2.2573 -4.9848 -7.7968 43 1 3.2123 -3.5987 -7.2176 44 1 -0.4765 -4.6067 -5.2987 45 1 0.1034 -5.5734 -6.6765 46 1 0.9430 -5.6639 -5.1098 47 1 1.2199 -2.1147 -7.4829 48 1 0.2652 -3.5004 -8.0626 49 1 -0.3148 -2.5340 -6.6846 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044606768.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:53 Heat of formation + Delta-G solvation = 108.825269 kcal Electronic energy + Delta-G solvation = -30162.867376 eV Core-core repulsion = 26163.832594 eV Total energy + Delta-G solvation = -3999.034782 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -45.62460 -41.63084 -38.89085 -38.63528 -36.27822 -34.76463 -34.50472 -33.73539 -32.92359 -31.06353 -28.73719 -28.53658 -28.38018 -26.64784 -25.98202 -25.69410 -24.33493 -23.07574 -22.01388 -21.57818 -20.61473 -19.13650 -18.56838 -18.38364 -17.75513 -17.33465 -16.74848 -16.51708 -15.86804 -15.62306 -15.52340 -15.30594 -15.14552 -15.08651 -14.74142 -14.45106 -14.16449 -14.08885 -13.57557 -13.48448 -13.39246 -13.23476 -13.18467 -13.06699 -12.90157 -12.84944 -12.79036 -12.65491 -12.63922 -12.23426 -12.16491 -12.13403 -12.10131 -12.02149 -11.77548 -11.47379 -11.46567 -11.35771 -10.80431 -10.56212 -9.74567 -8.98666 -7.91564 -5.20112 -0.15730 0.22754 0.64684 1.49101 1.50471 1.54233 1.58772 1.87764 2.57835 2.65805 2.90441 3.41830 3.47571 3.48556 3.62152 3.72124 3.73553 3.93275 4.05918 4.11792 4.21149 4.33445 4.33822 4.41363 4.52572 4.55577 4.55804 4.60415 4.64138 4.71485 4.72548 4.72894 4.84636 5.00181 5.01947 5.03743 5.10967 5.11481 5.16484 5.18509 5.22854 5.31414 5.40736 5.49323 5.55222 5.67647 6.13806 6.30225 6.74623 7.06727 7.36183 8.11546 8.35064 9.32192 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015806 B = 0.002741 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.009404 B =10214.091166 C =11368.588547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.152 3.848 3 H 0.099 0.901 4 C -0.123 4.123 5 C 0.173 3.827 6 H 0.054 0.946 7 N -0.737 5.737 8 C -0.233 4.233 9 H 0.079 0.921 10 C -0.079 4.079 11 N -0.973 5.973 12 Si 0.971 3.029 13 H -0.287 1.287 14 H -0.299 1.299 15 H -0.268 1.268 16 C -0.134 4.134 17 C 0.078 3.922 18 N -0.577 5.577 19 C 0.611 3.389 20 O -0.528 6.528 21 C 0.117 3.883 22 N -0.270 5.270 23 N -0.061 5.061 24 N -0.107 5.107 25 C 0.158 3.842 26 C -0.151 4.151 27 C -0.158 4.158 28 C -0.156 4.156 29 N -0.256 5.256 30 H 0.047 0.953 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.050 0.950 35 H 0.370 0.630 36 H 0.249 0.751 37 H 0.065 0.935 38 H 0.037 0.963 39 H 0.137 0.863 40 H 0.087 0.913 41 H 0.066 0.934 42 H 0.128 0.872 43 H 0.071 0.929 44 H 0.064 0.936 45 H 0.130 0.870 46 H 0.058 0.942 47 H 0.062 0.938 48 H 0.129 0.871 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.955 -1.049 -28.377 30.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.050 3.950 3 H 0.117 0.883 4 C -0.162 4.162 5 C 0.064 3.936 6 H 0.072 0.928 7 N -0.376 5.376 8 C -0.365 4.365 9 H 0.097 0.903 10 C -0.271 4.271 11 N -0.624 5.624 12 Si 0.800 3.200 13 H -0.215 1.215 14 H -0.226 1.226 15 H -0.193 1.193 16 C -0.175 4.175 17 C -0.045 4.045 18 N -0.309 5.309 19 C 0.394 3.606 20 O -0.403 6.403 21 C -0.167 4.167 22 N -0.143 5.143 23 N -0.052 5.052 24 N -0.024 5.024 25 C 0.080 3.920 26 C -0.208 4.208 27 C -0.216 4.216 28 C -0.214 4.214 29 N -0.110 5.110 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.202 0.798 36 H 0.058 0.942 37 H 0.084 0.916 38 H 0.056 0.944 39 H 0.154 0.846 40 H 0.105 0.895 41 H 0.086 0.914 42 H 0.146 0.854 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.148 0.852 46 H 0.077 0.923 47 H 0.082 0.918 48 H 0.148 0.852 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -9.990 -1.108 -28.734 30.442 hybrid contribution 0.606 -0.200 1.540 1.667 sum -9.384 -1.307 -27.194 28.797 Atomic orbital electron populations 1.22098 0.92130 1.02602 1.01885 1.21471 0.95906 0.95814 0.81821 0.88315 1.22166 0.95690 1.00663 0.97698 1.20443 0.92434 0.94855 0.85847 0.92843 1.42641 1.12154 1.54557 1.28215 1.19637 0.90078 1.20889 1.05874 0.90307 1.25549 1.02040 1.00509 0.98990 1.69829 1.37194 1.35326 1.20027 0.85170 0.80252 0.76399 0.78158 1.21469 1.22612 1.19263 1.22318 1.00921 0.98925 0.95312 1.22766 0.77873 1.02840 1.01070 1.48033 1.08275 1.55396 1.19177 1.16396 0.85109 0.78940 0.80181 1.90862 1.16612 1.56798 1.76024 1.25415 0.87559 1.04151 0.99532 1.75698 1.18470 1.12566 1.07541 1.78853 1.05877 1.13176 1.07304 1.51313 1.01218 1.30243 1.19631 1.22234 0.99317 0.91810 0.78607 1.22183 0.94157 1.02492 1.02016 1.22315 0.98580 0.95787 1.04964 1.22301 1.00154 0.99575 0.99373 1.74930 1.23295 1.10313 1.02437 0.93429 0.91417 0.90937 0.90041 0.93104 0.79831 0.94215 0.91634 0.94386 0.84614 0.89510 0.91443 0.85415 0.91026 0.91718 0.85176 0.92293 0.91846 0.85243 0.91685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.60 7.61 71.98 0.55 -3.05 16 2 C 0.15 4.35 3.49 44.97 0.16 4.51 16 3 H 0.10 2.48 8.14 -2.38 -0.02 2.46 16 4 C -0.12 -4.14 4.84 30.67 0.15 -4.00 16 5 C 0.17 6.76 2.73 45.02 0.12 6.88 16 6 H 0.05 2.06 8.08 -2.39 -0.02 2.04 16 7 N -0.74 -37.25 5.12 -322.82 -1.65 -38.90 16 8 C -0.23 -12.85 9.93 84.03 0.83 -12.01 16 9 H 0.08 4.14 7.83 -2.91 -0.02 4.11 16 10 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 11 N -0.97 -60.28 13.06 21.65 0.28 -60.00 16 12 Si 0.97 46.38 29.55 68.60 2.03 48.41 16 13 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 14 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 15 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 16 C -0.13 -4.86 5.64 30.53 0.17 -4.68 16 17 C 0.08 2.31 6.30 86.22 0.54 2.85 16 18 N -0.58 -17.37 2.98 -799.05 -2.38 -19.75 16 19 C 0.61 19.51 7.52 86.83 0.65 20.16 16 20 O -0.53 -18.23 12.66 -3.83 -0.05 -18.28 16 21 C 0.12 3.53 7.89 137.15 1.08 4.62 16 22 N -0.27 -7.83 8.90 -52.37 -0.47 -8.30 16 23 N -0.06 -1.53 12.21 37.02 0.45 -1.08 16 24 N -0.11 -2.31 3.72 -152.25 -0.57 -2.88 16 25 C 0.16 1.81 1.30 3.60 0.00 1.82 16 26 C -0.15 -1.08 7.90 71.98 0.57 -0.51 16 27 C -0.16 -1.43 8.66 71.98 0.62 -0.81 16 28 C -0.16 -1.22 8.66 71.98 0.62 -0.60 16 29 N -0.26 -6.96 11.86 -52.32 -0.62 -7.58 16 30 H 0.05 1.49 6.83 -2.39 -0.02 1.48 16 31 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.07 2.06 6.66 -2.39 -0.02 2.04 16 33 H 0.08 2.70 8.14 -2.38 -0.02 2.68 16 34 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.37 20.41 7.80 -92.71 -0.72 19.69 16 36 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 37 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 38 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 39 H 0.14 4.07 3.68 -85.13 -0.31 3.76 16 40 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 41 H 0.07 0.65 8.14 -2.39 -0.02 0.64 16 42 H 0.13 -0.02 8.14 -2.39 -0.02 -0.04 16 43 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 45 H 0.13 0.18 8.14 -2.39 -0.02 0.16 16 46 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 47 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 48 H 0.13 0.05 8.14 -2.39 -0.02 0.03 16 49 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -72.41 388.80 3.50 -68.91 By element: Atomic # 1 Polarization: 28.44 SS G_CDS: -0.07 Total: 28.37 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: 6.55 Total: 11.08 kcal Atomic # 7 Polarization: -133.53 SS G_CDS: -4.95 Total: -138.48 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.05 Total: -18.28 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.41 kcal Total: -72.41 3.50 -68.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044606768.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.730 kcal (2) G-P(sol) polarization free energy of solvation -72.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds