Wall clock time and date at job start Tue Mar 31 2020 21:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.69936 * 2 1 4 4 C 1.53190 * 109.58553 * 120.34938 * 2 1 3 5 5 C 1.53039 * 109.31229 * 174.42369 * 4 2 1 6 6 H 1.09002 * 109.46048 * 178.61774 * 5 4 2 7 7 N 1.46503 * 109.46048 * 58.65852 * 5 4 2 8 8 C 1.36930 * 119.99953 * 154.99891 * 7 5 4 9 9 H 1.07998 * 120.00617 * 0.02562 * 8 7 5 10 10 C 1.38820 * 119.99870 * 179.97438 * 8 7 5 11 11 N 1.31614 * 119.99735 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99973 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47210 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.46993 * 120.00252 * 12 10 8 15 15 H 1.48496 * 109.46783 * 240.00137 * 12 10 8 16 16 C 1.53042 * 109.53910 * 298.63756 * 5 4 2 17 17 C 1.52764 * 109.38275 * 61.24009 * 16 5 4 18 18 N 1.46923 * 109.58636 * 239.64154 * 2 1 3 19 19 C 1.34772 * 120.63294 * 6.58191 * 18 2 1 20 20 O 1.21539 * 120.00078 * 5.28686 * 19 18 2 21 21 C 1.48004 * 120.00179 * 185.00926 * 19 18 2 22 22 N 1.34188 * 126.69562 * 352.91625 * 21 19 18 23 23 N 1.28989 * 107.25352 * 179.83197 * 22 21 19 24 24 N 1.28727 * 108.98392 * 0.43325 * 23 22 21 25 25 C 1.46494 * 125.31887 * 179.72203 * 24 23 22 26 26 C 1.52998 * 109.47409 * 240.00000 * 25 24 23 27 27 C 1.53001 * 109.47414 * 0.02562 * 25 24 23 28 28 C 1.53003 * 109.46946 * 119.99918 * 25 24 23 29 29 N 1.28866 * 109.35833 * 359.72222 * 24 23 22 30 30 H 1.09002 * 109.46565 * 173.06286 * 1 2 3 31 31 H 1.08991 * 109.47468 * 293.06589 * 1 2 3 32 32 H 1.09004 * 109.47028 * 53.06501 * 1 2 3 33 33 H 1.08999 * 109.50122 * 294.38087 * 4 2 1 34 34 H 1.09008 * 109.49395 * 54.44236 * 4 2 1 35 35 H 0.97005 * 119.99525 * 335.00001 * 7 5 4 36 36 H 0.97000 * 120.00012 * 179.97438 * 11 10 8 37 37 H 1.09002 * 109.49652 * 181.31585 * 16 5 4 38 38 H 1.09005 * 109.49983 * 301.41294 * 16 5 4 39 39 H 1.08998 * 109.51169 * 185.70799 * 17 16 5 40 40 H 1.08996 * 109.43381 * 65.42498 * 17 16 5 41 41 H 1.09008 * 109.46596 * 60.00017 * 26 25 24 42 42 H 1.08999 * 109.47685 * 179.97438 * 26 25 24 43 43 H 1.08992 * 109.47125 * 300.00285 * 26 25 24 44 44 H 1.09004 * 109.47249 * 59.99835 * 27 25 24 45 45 H 1.09002 * 109.47374 * 179.97438 * 27 25 24 46 46 H 1.09000 * 109.47249 * 300.00417 * 27 25 24 47 47 H 1.09001 * 109.47007 * 60.00334 * 28 25 24 48 48 H 1.08999 * 109.46711 * 179.97438 * 28 25 24 49 49 H 1.08998 * 109.47654 * 300.00187 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7292 1.2455 5 6 3.5675 -0.8478 1.1703 6 1 3.9378 -1.3446 2.0670 7 7 4.1571 0.4900 1.0750 8 6 5.4413 0.7039 1.4991 9 1 6.0199 -0.1135 1.9034 10 6 6.0001 1.9715 1.4083 11 7 5.2953 2.9676 0.9152 12 14 7.7524 2.2633 1.9862 13 1 8.3245 0.9906 2.4944 14 1 8.5727 2.7554 0.8503 15 1 7.7532 3.2756 3.0725 16 6 3.9570 -1.6656 -0.0633 17 6 3.4646 -0.9519 -1.3210 18 7 2.0226 -0.6996 -1.1944 19 6 1.1675 -1.1071 -2.1531 20 8 -0.0098 -0.8134 -2.0821 21 6 1.6630 -1.9069 -3.2955 22 7 2.9434 -2.1891 -3.5814 23 7 2.9466 -2.9098 -4.6512 24 7 1.7331 -3.0792 -5.0457 25 6 1.3259 -3.8380 -6.2308 26 6 0.5727 -2.9166 -7.1924 27 6 2.5666 -4.3993 -6.9282 28 6 0.4129 -4.9911 -5.8092 29 7 0.9324 -2.4771 -4.2351 30 1 -0.3632 -1.0202 -0.1241 31 1 -0.3634 0.4026 0.9454 32 1 -0.3633 0.6176 -0.8215 33 1 1.7660 -0.1667 2.1369 34 1 1.6025 -1.7250 1.2917 35 1 3.6375 1.2241 0.7116 36 1 5.6856 3.8533 0.8521 37 1 5.0413 -1.7695 -0.1035 38 1 3.4984 -2.6528 -0.0051 39 1 3.6505 -1.5798 -2.1923 40 1 3.9929 -0.0049 -1.4310 41 1 1.2233 -2.0951 -7.4927 42 1 0.2701 -3.4810 -8.0744 43 1 -0.3112 -2.5171 -6.6954 44 1 3.1028 -5.0559 -6.2429 45 1 2.2636 -4.9643 -7.8098 46 1 3.2174 -3.5781 -7.2284 47 1 -0.4711 -4.5916 -5.3122 48 1 0.1096 -5.5554 -6.6911 49 1 0.9494 -5.6476 -5.1241 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044606769.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:58 Heat of formation + Delta-G solvation = 133.477973 kcal Electronic energy + Delta-G solvation = -30625.599197 eV Core-core repulsion = 26627.633437 eV Total energy + Delta-G solvation = -3997.965760 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -44.51099 -40.23372 -38.00113 -37.41228 -34.30937 -33.57676 -33.22716 -31.87638 -31.69662 -29.05487 -28.12770 -28.07948 -27.06401 -25.47523 -24.72259 -23.86257 -23.31602 -21.80247 -20.99058 -20.21131 -18.60368 -17.49999 -17.31942 -17.13855 -16.64641 -15.91010 -15.30389 -14.79979 -14.75077 -14.66998 -14.14438 -14.08046 -13.85876 -13.60655 -13.42050 -13.17482 -13.05958 -12.96376 -12.84341 -12.62749 -12.36908 -12.29665 -12.05162 -11.98049 -11.94661 -11.75624 -11.44803 -11.21604 -11.09640 -10.97258 -10.83645 -10.74582 -10.53284 -10.40247 -10.19529 -9.93544 -9.82649 -9.59635 -9.12619 -8.85845 -8.17154 -6.92833 -5.74030 -3.02408 0.97217 1.46354 1.52331 2.85881 3.23087 3.45408 3.51371 3.53335 3.72203 3.99779 4.00218 4.10851 4.45535 4.62111 4.84750 4.90488 4.91936 5.04498 5.08022 5.12662 5.13986 5.31875 5.33117 5.40591 5.46867 5.50371 5.56106 5.64691 5.67165 5.69259 5.86022 5.88741 5.98182 6.02043 6.07436 6.21935 6.33079 6.46961 6.52514 6.62045 6.67569 6.79077 6.84616 6.96187 7.11910 7.62178 7.74149 8.07617 8.31650 8.44467 9.55949 10.12948 10.47918 11.48635 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.016213 B = 0.003025 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.620634 B = 9254.133764 C =10234.438757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.146 3.854 3 H 0.087 0.913 4 C -0.133 4.133 5 C 0.172 3.828 6 H 0.051 0.949 7 N -0.722 5.722 8 C -0.235 4.235 9 H 0.071 0.929 10 C -0.013 4.013 11 N -0.932 5.932 12 Si 0.904 3.096 13 H -0.281 1.281 14 H -0.293 1.293 15 H -0.293 1.293 16 C -0.145 4.145 17 C 0.075 3.925 18 N -0.570 5.570 19 C 0.608 3.392 20 O -0.517 6.517 21 C 0.137 3.863 22 N -0.252 5.252 23 N -0.061 5.061 24 N -0.127 5.127 25 C 0.177 3.823 26 C -0.160 4.160 27 C -0.153 4.153 28 C -0.160 4.160 29 N -0.251 5.251 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.383 0.617 36 H 0.254 0.746 37 H 0.075 0.925 38 H 0.045 0.955 39 H 0.126 0.874 40 H 0.085 0.915 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.079 0.921 44 H 0.076 0.924 45 H 0.090 0.910 46 H 0.077 0.923 47 H 0.079 0.921 48 H 0.091 0.909 49 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.601 -16.541 -15.800 25.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.044 3.956 3 H 0.105 0.895 4 C -0.172 4.172 5 C 0.061 3.939 6 H 0.069 0.931 7 N -0.364 5.364 8 C -0.367 4.367 9 H 0.089 0.911 10 C -0.209 4.209 11 N -0.581 5.581 12 Si 0.736 3.264 13 H -0.206 1.206 14 H -0.220 1.220 15 H -0.220 1.220 16 C -0.186 4.186 17 C -0.047 4.047 18 N -0.302 5.302 19 C 0.389 3.611 20 O -0.391 6.391 21 C -0.147 4.147 22 N -0.125 5.125 23 N -0.053 5.053 24 N -0.041 5.041 25 C 0.096 3.904 26 C -0.219 4.219 27 C -0.211 4.211 28 C -0.218 4.218 29 N -0.103 5.103 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.218 0.782 36 H 0.064 0.936 37 H 0.093 0.907 38 H 0.063 0.937 39 H 0.143 0.857 40 H 0.103 0.897 41 H 0.088 0.912 42 H 0.110 0.890 43 H 0.098 0.902 44 H 0.095 0.905 45 H 0.108 0.892 46 H 0.096 0.904 47 H 0.098 0.902 48 H 0.110 0.890 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -10.648 -16.670 -16.077 25.490 hybrid contribution 0.780 0.709 0.486 1.161 sum -9.868 -15.961 -15.591 24.396 Atomic orbital electron populations 1.22229 0.93132 1.03265 1.01007 1.21384 0.94911 0.96268 0.83001 0.89497 1.22253 0.97605 1.00226 0.97073 1.20233 0.90271 0.88184 0.95180 0.93119 1.42505 1.13793 1.04678 1.75430 1.19275 0.89759 0.94113 1.33527 0.91143 1.24718 0.98215 0.95950 1.02049 1.69661 1.36372 1.00554 1.51507 0.86154 0.84820 0.77590 0.77848 1.20615 1.21977 1.22025 1.22391 1.01506 0.97714 0.96968 1.22699 0.77519 1.03389 1.01104 1.48001 1.08482 1.54693 1.19006 1.16317 0.85379 0.79362 0.80034 1.90863 1.16141 1.56466 1.75632 1.25633 0.87025 1.03018 0.98979 1.75899 1.18423 1.11605 1.06571 1.78936 1.05153 1.13336 1.07836 1.50701 1.02050 1.31846 1.19526 1.21486 0.97801 0.91389 0.79724 1.22257 1.01301 0.99582 0.98729 1.22107 0.95272 1.02646 1.01110 1.22254 0.99774 0.96275 1.03520 1.74959 1.22770 1.10534 1.02057 0.91904 0.93385 0.90753 0.90439 0.92040 0.78173 0.93615 0.90662 0.93662 0.85704 0.89681 0.91240 0.89042 0.90213 0.90454 0.89174 0.90425 0.90245 0.89047 0.91278 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 7.61 37.16 0.28 -1.94 16 2 C 0.15 2.55 3.20 -67.60 -0.22 2.33 16 3 H 0.09 1.69 6.64 -51.93 -0.34 1.34 16 4 C -0.13 -2.24 5.07 -26.61 -0.13 -2.37 16 5 C 0.17 3.34 3.10 -67.89 -0.21 3.13 16 6 H 0.05 1.00 8.08 -51.93 -0.42 0.59 16 7 N -0.72 -17.34 4.31 -53.38 -0.23 -17.57 16 8 C -0.24 -6.34 9.93 -15.06 -0.15 -6.49 16 9 H 0.07 1.86 7.83 -52.49 -0.41 1.44 16 10 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 11 N -0.93 -27.76 13.06 55.49 0.72 -27.03 16 12 Si 0.90 22.25 29.55 -169.99 -5.02 17.23 16 13 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 14 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 15 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 16 C -0.14 -2.60 5.76 -26.83 -0.15 -2.75 16 17 C 0.08 1.37 6.04 -3.93 -0.02 1.34 16 18 N -0.57 -10.05 2.98 -166.52 -0.50 -10.54 16 19 C 0.61 10.78 7.52 -12.26 -0.09 10.69 16 20 O -0.52 -9.75 12.65 5.33 0.07 -9.68 16 21 C 0.14 2.26 7.89 -156.24 -1.23 1.03 16 22 N -0.25 -4.03 8.90 32.10 0.29 -3.74 16 23 N -0.06 -0.84 12.21 60.35 0.74 -0.10 16 24 N -0.13 -1.52 3.72 0.52 0.00 -1.51 16 25 C 0.18 1.28 1.30 -131.82 -0.17 1.11 16 26 C -0.16 -0.95 8.66 37.16 0.32 -0.63 16 27 C -0.15 -0.81 7.90 37.16 0.29 -0.52 16 28 C -0.16 -0.91 8.66 37.16 0.32 -0.59 16 29 N -0.25 -3.67 11.85 32.11 0.38 -3.29 16 30 H 0.06 1.03 6.83 -51.93 -0.35 0.68 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 1.27 6.66 -51.93 -0.35 0.92 16 33 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.06 0.95 8.14 -51.92 -0.42 0.52 16 35 H 0.38 9.81 6.06 -40.82 -0.25 9.57 16 36 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 37 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 38 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.13 2.17 3.69 -115.43 -0.43 1.75 16 40 H 0.08 1.78 7.74 -51.93 -0.40 1.38 16 41 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 42 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 43 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 46 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 49 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 384.52 15.07 5.79 5.79 Total: -1.00 -32.09 384.52 -7.02 -39.12 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -8.00 Total: 7.47 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -1.26 Total: 3.86 kcal Atomic # 7 Polarization: -65.20 SS G_CDS: 1.40 Total: -63.79 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.07 Total: -9.68 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.09 -7.02 -39.12 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044606769.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.593 kcal (2) G-P(sol) polarization free energy of solvation -32.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds