Wall clock time and date at job start Tue Mar 31 2020 21:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08999 * 109.69936 * 2 1 4 4 C 1.53190 * 109.58553 * 120.34938 * 2 1 3 5 5 C 1.53039 * 109.31229 * 174.42369 * 4 2 1 6 6 H 1.09002 * 109.46048 * 178.61774 * 5 4 2 7 7 N 1.46503 * 109.46048 * 58.65852 * 5 4 2 8 8 C 1.36930 * 119.99953 * 154.99891 * 7 5 4 9 9 H 1.07998 * 120.00617 * 0.02562 * 8 7 5 10 10 C 1.38820 * 119.99870 * 179.97438 * 8 7 5 11 11 N 1.31614 * 119.99735 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 119.99973 * 180.02562 * 10 8 7 13 13 H 1.48500 * 109.47210 * 0.02562 * 12 10 8 14 14 H 1.48498 * 109.46993 * 120.00252 * 12 10 8 15 15 H 1.48496 * 109.46783 * 240.00137 * 12 10 8 16 16 C 1.53042 * 109.53910 * 298.63756 * 5 4 2 17 17 C 1.52764 * 109.38275 * 61.24009 * 16 5 4 18 18 N 1.46923 * 109.58636 * 239.64154 * 2 1 3 19 19 C 1.34772 * 120.63294 * 6.58191 * 18 2 1 20 20 O 1.21539 * 120.00078 * 5.28686 * 19 18 2 21 21 C 1.48004 * 120.00179 * 185.00926 * 19 18 2 22 22 N 1.34188 * 126.69562 * 352.91625 * 21 19 18 23 23 N 1.28989 * 107.25352 * 179.83197 * 22 21 19 24 24 N 1.28727 * 108.98392 * 0.43325 * 23 22 21 25 25 C 1.46494 * 125.31887 * 179.72203 * 24 23 22 26 26 C 1.52998 * 109.47409 * 240.00000 * 25 24 23 27 27 C 1.53001 * 109.47414 * 0.02562 * 25 24 23 28 28 C 1.53003 * 109.46946 * 119.99918 * 25 24 23 29 29 N 1.28866 * 109.35833 * 359.72222 * 24 23 22 30 30 H 1.09002 * 109.46565 * 173.06286 * 1 2 3 31 31 H 1.08991 * 109.47468 * 293.06589 * 1 2 3 32 32 H 1.09004 * 109.47028 * 53.06501 * 1 2 3 33 33 H 1.08999 * 109.50122 * 294.38087 * 4 2 1 34 34 H 1.09008 * 109.49395 * 54.44236 * 4 2 1 35 35 H 0.97005 * 119.99525 * 335.00001 * 7 5 4 36 36 H 0.97000 * 120.00012 * 179.97438 * 11 10 8 37 37 H 1.09002 * 109.49652 * 181.31585 * 16 5 4 38 38 H 1.09005 * 109.49983 * 301.41294 * 16 5 4 39 39 H 1.08998 * 109.51169 * 185.70799 * 17 16 5 40 40 H 1.08996 * 109.43381 * 65.42498 * 17 16 5 41 41 H 1.09008 * 109.46596 * 60.00017 * 26 25 24 42 42 H 1.08999 * 109.47685 * 179.97438 * 26 25 24 43 43 H 1.08992 * 109.47125 * 300.00285 * 26 25 24 44 44 H 1.09004 * 109.47249 * 59.99835 * 27 25 24 45 45 H 1.09002 * 109.47374 * 179.97438 * 27 25 24 46 46 H 1.09000 * 109.47249 * 300.00417 * 27 25 24 47 47 H 1.09001 * 109.47007 * 60.00334 * 28 25 24 48 48 H 1.08999 * 109.46711 * 179.97438 * 28 25 24 49 49 H 1.08998 * 109.47654 * 300.00187 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7292 1.2455 5 6 3.5675 -0.8478 1.1703 6 1 3.9378 -1.3446 2.0670 7 7 4.1571 0.4900 1.0750 8 6 5.4413 0.7039 1.4991 9 1 6.0199 -0.1135 1.9034 10 6 6.0001 1.9715 1.4083 11 7 5.2953 2.9676 0.9152 12 14 7.7524 2.2633 1.9862 13 1 8.3245 0.9906 2.4944 14 1 8.5727 2.7554 0.8503 15 1 7.7532 3.2756 3.0725 16 6 3.9570 -1.6656 -0.0633 17 6 3.4646 -0.9519 -1.3210 18 7 2.0226 -0.6996 -1.1944 19 6 1.1675 -1.1071 -2.1531 20 8 -0.0098 -0.8134 -2.0821 21 6 1.6630 -1.9069 -3.2955 22 7 2.9434 -2.1891 -3.5814 23 7 2.9466 -2.9098 -4.6512 24 7 1.7331 -3.0792 -5.0457 25 6 1.3259 -3.8380 -6.2308 26 6 0.5727 -2.9166 -7.1924 27 6 2.5666 -4.3993 -6.9282 28 6 0.4129 -4.9911 -5.8092 29 7 0.9324 -2.4771 -4.2351 30 1 -0.3632 -1.0202 -0.1241 31 1 -0.3634 0.4026 0.9454 32 1 -0.3633 0.6176 -0.8215 33 1 1.7660 -0.1667 2.1369 34 1 1.6025 -1.7250 1.2917 35 1 3.6375 1.2241 0.7116 36 1 5.6856 3.8533 0.8521 37 1 5.0413 -1.7695 -0.1035 38 1 3.4984 -2.6528 -0.0051 39 1 3.6505 -1.5798 -2.1923 40 1 3.9929 -0.0049 -1.4310 41 1 1.2233 -2.0951 -7.4927 42 1 0.2701 -3.4810 -8.0744 43 1 -0.3112 -2.5171 -6.6954 44 1 3.1028 -5.0559 -6.2429 45 1 2.2636 -4.9643 -7.8098 46 1 3.2174 -3.5781 -7.2284 47 1 -0.4711 -4.5916 -5.3122 48 1 0.1096 -5.5554 -6.6911 49 1 0.9494 -5.6476 -5.1241 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044606769.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:57 Heat of formation + Delta-G solvation = 112.957296 kcal Electronic energy + Delta-G solvation = -30626.489041 eV Core-core repulsion = 26627.633437 eV Total energy + Delta-G solvation = -3998.855603 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -45.61976 -41.65236 -38.99085 -38.63533 -35.98970 -34.74250 -34.48813 -33.69587 -32.89907 -30.88914 -28.75857 -28.52985 -28.38980 -26.63045 -25.87161 -25.64860 -24.93363 -23.13356 -22.04591 -21.46195 -20.05165 -19.19766 -18.56668 -18.31536 -17.73847 -17.32687 -16.79455 -16.36365 -15.77232 -15.69799 -15.58804 -15.30148 -15.14497 -14.97874 -14.79464 -14.44217 -14.23864 -14.03007 -13.52691 -13.49806 -13.38276 -13.27575 -13.22393 -12.96028 -12.89554 -12.84392 -12.76943 -12.63832 -12.52993 -12.37138 -12.13179 -12.10533 -12.05245 -11.96788 -11.68106 -11.47848 -11.40281 -11.34845 -10.81247 -10.49908 -9.65504 -8.93472 -7.88207 -5.15197 -0.15447 0.23265 0.65797 1.49945 1.50596 1.58076 1.59974 1.86841 2.60571 2.68481 2.91581 3.45605 3.48228 3.49270 3.62784 3.74840 3.87422 3.96746 4.04686 4.09725 4.20507 4.38591 4.42326 4.43820 4.48417 4.53234 4.57582 4.61080 4.63085 4.72993 4.73407 4.83406 4.91739 5.02507 5.04688 5.07370 5.11667 5.16247 5.18705 5.21104 5.23365 5.32083 5.37842 5.42472 5.60090 5.68831 6.20528 6.33886 6.76579 7.07678 7.40782 8.16491 8.40075 9.35452 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.016213 B = 0.003025 C = 0.002735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.620634 B = 9254.133764 C =10234.438757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.146 3.854 3 H 0.061 0.939 4 C -0.121 4.121 5 C 0.165 3.835 6 H 0.053 0.947 7 N -0.730 5.730 8 C -0.227 4.227 9 H 0.077 0.923 10 C -0.076 4.076 11 N -0.970 5.970 12 Si 0.966 3.034 13 H -0.266 1.266 14 H -0.299 1.299 15 H -0.298 1.298 16 C -0.136 4.136 17 C 0.085 3.915 18 N -0.571 5.571 19 C 0.609 3.391 20 O -0.531 6.531 21 C 0.119 3.881 22 N -0.272 5.272 23 N -0.061 5.061 24 N -0.107 5.107 25 C 0.158 3.842 26 C -0.157 4.157 27 C -0.150 4.150 28 C -0.156 4.156 29 N -0.253 5.253 30 H 0.061 0.939 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.373 0.627 36 H 0.248 0.752 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.138 0.862 40 H 0.050 0.950 41 H 0.058 0.942 42 H 0.131 0.869 43 H 0.064 0.936 44 H 0.070 0.930 45 H 0.128 0.872 46 H 0.067 0.933 47 H 0.064 0.936 48 H 0.130 0.870 49 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.133 -19.237 -16.955 27.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.044 3.956 3 H 0.079 0.921 4 C -0.160 4.160 5 C 0.057 3.943 6 H 0.071 0.929 7 N -0.371 5.371 8 C -0.359 4.359 9 H 0.095 0.905 10 C -0.268 4.268 11 N -0.621 5.621 12 Si 0.797 3.203 13 H -0.190 1.190 14 H -0.226 1.226 15 H -0.225 1.225 16 C -0.176 4.176 17 C -0.038 4.038 18 N -0.303 5.303 19 C 0.391 3.609 20 O -0.406 6.406 21 C -0.165 4.165 22 N -0.145 5.145 23 N -0.052 5.052 24 N -0.024 5.024 25 C 0.080 3.920 26 C -0.216 4.216 27 C -0.208 4.208 28 C -0.214 4.214 29 N -0.107 5.107 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.206 0.794 36 H 0.056 0.944 37 H 0.083 0.917 38 H 0.088 0.912 39 H 0.154 0.846 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.149 0.851 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.147 0.853 46 H 0.086 0.914 47 H 0.083 0.917 48 H 0.148 0.852 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.176 -19.427 -17.227 28.268 hybrid contribution 0.855 1.410 0.686 1.786 sum -10.321 -18.017 -16.541 26.547 Atomic orbital electron populations 1.22081 0.91723 1.02993 1.01492 1.21352 0.95875 0.95050 0.83345 0.92132 1.22151 0.95569 1.01498 0.96787 1.20463 0.91887 0.86166 0.95801 0.92887 1.42663 1.13064 1.06257 1.75134 1.19637 0.90771 0.93991 1.31537 0.90525 1.25452 1.01833 0.96094 1.03463 1.69816 1.37910 1.00652 1.53752 0.85166 0.80703 0.77664 0.76815 1.18994 1.22628 1.22529 1.22262 1.01022 0.98488 0.95859 1.22540 0.77598 1.01751 1.01891 1.47969 1.08210 1.54813 1.19258 1.16417 0.85163 0.79151 0.80153 1.90851 1.16647 1.57052 1.76084 1.25354 0.87495 1.04177 0.99462 1.75748 1.18512 1.12535 1.07693 1.78856 1.05922 1.13112 1.07329 1.51337 1.01203 1.30298 1.19522 1.22250 0.99391 0.91858 0.78525 1.22312 1.00130 0.99583 0.99553 1.22184 0.94120 1.02427 1.02108 1.22304 0.98515 0.95573 1.05038 1.74924 1.23147 1.10579 1.02062 0.91957 0.91449 0.92162 0.90060 0.89652 0.79375 0.94357 0.91661 0.91211 0.84590 0.93194 0.92241 0.85104 0.91720 0.91130 0.85332 0.91413 0.91688 0.85175 0.91908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.95 7.61 71.98 0.55 -3.40 16 2 C 0.15 5.10 3.20 44.98 0.14 5.24 16 3 H 0.06 2.45 6.64 -2.39 -0.02 2.43 16 4 C -0.12 -3.96 5.07 30.67 0.16 -3.81 16 5 C 0.17 6.34 3.10 45.02 0.14 6.48 16 6 H 0.05 2.03 8.08 -2.39 -0.02 2.01 16 7 N -0.73 -35.56 4.31 -322.80 -1.39 -36.96 16 8 C -0.23 -12.30 9.93 84.04 0.83 -11.46 16 9 H 0.08 3.98 7.83 -2.91 -0.02 3.96 16 10 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 11 N -0.97 -59.37 13.06 21.65 0.28 -59.09 16 12 Si 0.97 46.34 29.55 68.60 2.03 48.37 16 13 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 14 H -0.30 -14.49 7.11 99.48 0.71 -13.79 16 15 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 16 C -0.14 -4.78 5.76 30.53 0.18 -4.61 16 17 C 0.09 3.13 6.04 86.22 0.52 3.65 16 18 N -0.57 -20.32 2.98 -799.04 -2.38 -22.70 16 19 C 0.61 21.71 7.52 86.83 0.65 22.36 16 20 O -0.53 -20.09 12.65 -3.84 -0.05 -20.14 16 21 C 0.12 3.91 7.89 137.15 1.08 4.99 16 22 N -0.27 -8.70 8.90 -52.36 -0.47 -9.17 16 23 N -0.06 -1.65 12.21 37.02 0.45 -1.20 16 24 N -0.11 -2.45 3.72 -152.26 -0.57 -3.01 16 25 C 0.16 1.94 1.30 3.61 0.00 1.94 16 26 C -0.16 -1.50 8.66 71.98 0.62 -0.87 16 27 C -0.15 -1.19 7.90 71.98 0.57 -0.62 16 28 C -0.16 -1.35 8.66 71.98 0.62 -0.73 16 29 N -0.25 -7.30 11.85 -52.32 -0.62 -7.92 16 30 H 0.06 1.97 6.83 -2.39 -0.02 1.95 16 31 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.06 2.07 6.66 -2.39 -0.02 2.05 16 33 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 34 H 0.08 2.42 8.14 -2.38 -0.02 2.40 16 35 H 0.37 19.73 6.06 -92.70 -0.56 19.17 16 36 H 0.25 14.83 8.31 -92.71 -0.77 14.05 16 37 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 38 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 39 H 0.14 4.79 3.69 -84.49 -0.31 4.48 16 40 H 0.05 2.19 7.74 -2.39 -0.02 2.17 16 41 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 42 H 0.13 0.21 8.14 -2.39 -0.02 0.19 16 43 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.13 0.04 8.14 -2.39 -0.02 0.02 16 46 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 48 H 0.13 0.13 8.14 -2.39 -0.02 0.11 16 49 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -70.97 384.52 3.92 -67.05 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: 0.10 Total: 29.50 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: 6.54 Total: 15.28 kcal Atomic # 7 Polarization: -135.36 SS G_CDS: -4.69 Total: -140.05 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.05 Total: -20.14 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -70.97 3.92 -67.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044606769.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.004 kcal (2) G-P(sol) polarization free energy of solvation -70.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds