Wall clock time and date at job start Tue Mar 31 2020 21:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46566 * 2 1 4 4 C 1.50698 * 109.47116 * 120.00135 * 2 1 3 5 5 N 1.31064 * 126.66535 * 300.03977 * 4 2 1 6 6 N 1.28834 * 107.99477 * 179.97438 * 5 4 2 7 7 N 1.28745 * 109.39520 * 359.73849 * 6 5 4 8 8 N 1.29013 * 108.80430 * 0.43438 * 7 6 5 9 9 C 1.46504 * 126.43149 * 179.83530 * 8 7 6 10 10 C 1.50703 * 109.47301 * 269.68650 * 9 8 7 11 11 O 1.21287 * 119.99910 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00086 * 180.02562 * 10 9 8 13 13 C 1.46932 * 120.63347 * 354.21637 * 12 10 9 14 14 C 1.53196 * 108.77427 * 126.36579 * 13 12 10 15 15 C 1.53044 * 109.31025 * 54.63992 * 14 13 12 16 16 H 1.09000 * 109.45924 * 178.62450 * 15 14 13 17 17 N 1.46497 * 109.46187 * 58.65146 * 15 14 13 18 18 C 1.36938 * 120.00093 * 84.99850 * 17 15 14 19 19 H 1.08000 * 119.99728 * 0.02562 * 18 17 15 20 20 C 1.38811 * 120.00262 * 180.02562 * 18 17 15 21 21 N 1.31625 * 120.00021 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99991 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47329 * 89.99616 * 22 20 18 24 24 H 1.48505 * 109.47131 * 209.99574 * 22 20 18 25 25 H 1.48502 * 109.47277 * 329.99562 * 22 20 18 26 26 C 1.53043 * 109.53716 * 298.63342 * 15 14 13 27 27 C 1.46930 * 120.62867 * 174.19368 * 12 10 9 28 28 H 1.09005 * 109.58147 * 113.70482 * 27 12 10 29 29 C 1.52994 * 109.58761 * 353.42114 * 27 12 10 30 30 H 1.08996 * 109.47789 * 59.99834 * 1 2 3 31 31 H 1.09008 * 109.47086 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47044 * 299.99423 * 1 2 3 33 33 H 1.09001 * 109.46734 * 240.00187 * 2 1 3 34 34 H 1.09006 * 109.46480 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47521 * 300.00151 * 3 2 1 36 36 H 1.09001 * 109.47441 * 60.00620 * 3 2 1 37 37 H 1.09003 * 109.47005 * 149.69371 * 9 8 7 38 38 H 1.08997 * 109.47292 * 29.69194 * 9 8 7 39 39 H 1.09003 * 109.58069 * 6.58374 * 13 12 10 40 40 H 1.08993 * 109.58481 * 246.15629 * 13 12 10 41 41 H 1.09000 * 109.49609 * 294.68744 * 14 13 12 42 42 H 1.08999 * 109.52008 * 174.60229 * 14 13 12 43 43 H 0.97006 * 120.00298 * 264.99940 * 17 15 14 44 44 H 0.96999 * 119.99750 * 179.97438 * 21 20 18 45 45 H 1.09005 * 109.49209 * 181.31997 * 26 15 14 46 46 H 1.09006 * 109.49241 * 301.41362 * 26 15 14 47 47 H 1.08993 * 109.47382 * 65.78413 * 29 27 12 48 48 H 1.08999 * 109.47237 * 185.78701 * 29 27 12 49 49 H 1.09000 * 109.47104 * 305.78413 * 29 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7971 -0.3789 2.4764 6 7 2.3981 -1.2294 3.2349 7 7 3.0063 -2.0982 2.5049 8 7 2.8094 -1.8089 1.2631 9 6 3.3289 -2.5422 0.1060 10 6 4.6670 -1.9730 -0.2900 11 8 5.1403 -1.0464 0.3333 12 7 5.3376 -2.4936 -1.3367 13 6 4.8400 -3.6941 -2.0224 14 6 4.7263 -3.3947 -3.5205 15 6 6.0740 -2.8878 -4.0391 16 1 6.0026 -2.6972 -5.1099 17 7 7.1042 -3.8994 -3.7910 18 6 7.2919 -4.9192 -4.6855 19 1 6.6807 -4.9773 -5.5740 20 6 8.2676 -5.8780 -4.4503 21 7 9.0128 -5.8068 -3.3676 22 14 8.5241 -7.2686 -5.6708 23 1 9.5257 -6.8569 -6.6870 24 1 9.0134 -8.4732 -4.9532 25 1 7.2371 -7.5813 -6.3426 26 6 6.4468 -1.5923 -3.3145 27 6 6.5800 -1.8711 -1.8141 28 1 7.4176 -2.5462 -1.6387 29 6 6.8152 -0.5569 -1.0670 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6765 1.9564 -0.8899 36 1 1.6766 1.9564 0.8900 37 1 2.6326 -2.4466 -0.7271 38 1 3.4439 -3.5947 0.3646 39 1 3.8596 -3.9604 -1.6275 40 1 5.5355 -4.5186 -1.8663 41 1 3.9642 -2.6324 -3.6823 42 1 4.4501 -4.3043 -4.0537 43 1 7.6534 -3.8470 -2.9931 44 1 9.6944 -6.4771 -3.2031 45 1 7.3954 -1.2194 -3.7010 46 1 5.6684 -0.8470 -3.4784 47 1 6.9993 -0.7659 -0.0133 48 1 7.6793 -0.0467 -1.4926 49 1 5.9346 0.0783 -1.1630 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044778564.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:03 Heat of formation + Delta-G solvation = 104.802634 kcal Electronic energy + Delta-G solvation = -30848.644806 eV Core-core repulsion = 26849.435590 eV Total energy + Delta-G solvation = -3999.209216 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -44.28269 -40.66078 -37.86122 -36.43148 -35.57075 -34.44925 -32.93922 -32.09212 -31.53384 -29.52031 -28.85078 -27.56065 -27.11513 -24.60008 -24.42587 -23.72871 -23.51803 -22.05599 -20.98148 -20.28302 -18.74898 -17.89416 -17.42880 -17.34154 -16.39874 -16.21237 -15.72191 -15.43728 -14.96298 -14.70761 -14.21675 -14.09709 -13.95243 -13.79158 -13.59459 -13.48242 -13.31534 -12.92055 -12.70179 -12.55154 -12.32430 -12.21323 -12.12523 -11.94321 -11.69316 -11.67175 -11.50518 -11.37597 -11.27602 -11.08760 -11.03398 -10.94070 -10.83884 -10.63853 -10.38998 -10.12881 -10.09051 -9.77499 -9.18374 -9.07417 -8.47430 -7.13156 -5.90845 -3.21041 1.09229 1.68003 2.18590 2.28915 2.86889 3.33606 3.39126 3.41371 3.64421 3.93693 4.05283 4.20966 4.46621 4.48300 4.61256 4.73868 4.87775 4.92173 5.09521 5.16600 5.26327 5.27775 5.28592 5.39763 5.41646 5.48136 5.51003 5.52572 5.54195 5.61732 5.69012 5.79466 5.82529 5.88027 5.92247 5.96361 5.98854 6.11378 6.19489 6.29687 6.36261 6.53810 6.58290 6.65009 6.81530 7.33589 7.56830 7.93873 8.27082 8.54543 9.38831 9.93686 10.28002 11.31225 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.019474 B = 0.002872 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.457369 B = 9747.111375 C = 9876.661895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.011 4.011 3 C -0.143 4.143 4 C 0.201 3.799 5 N -0.303 5.303 6 N -0.077 5.077 7 N -0.084 5.084 8 N -0.290 5.290 9 C 0.088 3.912 10 C 0.500 3.500 11 O -0.522 6.522 12 N -0.587 5.587 13 C 0.107 3.893 14 C -0.150 4.150 15 C 0.173 3.827 16 H 0.053 0.947 17 N -0.722 5.722 18 C -0.244 4.244 19 H 0.071 0.929 20 C -0.010 4.010 21 N -0.931 5.931 22 Si 0.906 3.094 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.282 1.282 26 C -0.133 4.133 27 C 0.147 3.853 28 H 0.085 0.915 29 C -0.137 4.137 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.136 0.864 38 H 0.141 0.859 39 H 0.067 0.933 40 H 0.094 0.906 41 H 0.050 0.950 42 H 0.077 0.923 43 H 0.384 0.616 44 H 0.256 0.744 45 H 0.077 0.923 46 H 0.061 0.939 47 H 0.075 0.925 48 H 0.046 0.954 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.848 10.413 1.940 19.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.032 4.032 3 C -0.201 4.201 4 C -0.077 4.077 5 N -0.151 5.151 6 N -0.070 5.070 7 N -0.070 5.070 8 N -0.091 5.091 9 C -0.038 4.038 10 C 0.285 3.715 11 O -0.399 6.399 12 N -0.320 5.320 13 C -0.015 4.015 14 C -0.191 4.191 15 C 0.063 3.937 16 H 0.071 0.929 17 N -0.365 5.365 18 C -0.375 4.375 19 H 0.089 0.911 20 C -0.206 4.206 21 N -0.578 5.578 22 Si 0.737 3.263 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.172 4.172 27 C 0.045 3.955 28 H 0.103 0.897 29 C -0.194 4.194 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.154 0.846 38 H 0.159 0.841 39 H 0.086 0.914 40 H 0.112 0.888 41 H 0.069 0.931 42 H 0.096 0.904 43 H 0.219 0.781 44 H 0.066 0.934 45 H 0.096 0.904 46 H 0.080 0.920 47 H 0.093 0.907 48 H 0.065 0.935 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -15.439 10.589 3.565 19.058 hybrid contribution 0.521 -1.192 -1.501 1.986 sum -14.918 9.397 2.064 17.752 Atomic orbital electron populations 1.21852 0.92002 1.02676 1.03640 1.19779 0.97244 0.96580 0.89634 1.21818 1.02001 0.93019 1.03275 1.26029 0.94938 0.88833 0.97911 1.74916 1.20765 1.21087 0.98354 1.78590 1.07038 0.98939 1.22461 1.78903 1.19012 1.21805 0.87271 1.47902 1.33574 1.20721 1.06887 1.22178 0.96935 0.98705 0.85940 1.20126 0.85910 0.84096 0.81408 1.90845 1.67480 1.29013 1.52585 1.48154 1.25015 1.28642 1.30175 1.21892 0.99069 0.87035 0.93459 1.22539 1.00255 1.01732 0.94569 1.20191 0.88356 0.88111 0.97092 0.92878 1.42520 1.39391 1.27734 1.26835 1.19206 1.14712 1.02046 1.01540 0.91142 1.24739 0.98704 0.99392 0.97778 1.69647 1.24480 1.36961 1.26752 0.86227 0.77826 0.81925 0.80368 1.21718 1.21796 1.20761 1.22259 1.02279 0.98559 0.94080 1.21345 0.85090 0.95176 0.93885 0.89699 1.22197 1.00765 0.95410 1.01054 0.90789 0.92392 0.90967 0.89165 0.91847 0.90957 0.91122 0.84592 0.84140 0.91449 0.88820 0.93125 0.90393 0.78135 0.93371 0.90444 0.92005 0.90662 0.93492 0.92297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 9.18 37.16 0.34 -0.57 16 2 C -0.01 -0.09 3.26 -91.77 -0.30 -0.38 16 3 C -0.14 -1.16 9.18 37.16 0.34 -0.82 16 4 C 0.20 2.41 6.64 -155.44 -1.03 1.38 16 5 N -0.30 -4.45 12.36 32.70 0.40 -4.05 16 6 N -0.08 -1.26 13.43 60.35 0.81 -0.45 16 7 N -0.08 -1.31 13.29 60.35 0.80 -0.51 16 8 N -0.29 -3.64 2.83 -59.44 -0.17 -3.80 16 9 C 0.09 0.83 4.92 -5.19 -0.03 0.81 16 10 C 0.50 6.39 7.57 -10.99 -0.08 6.30 16 11 O -0.52 -8.36 12.00 5.55 0.07 -8.30 16 12 N -0.59 -7.59 2.97 -165.21 -0.49 -8.08 16 13 C 0.11 1.32 6.09 -3.71 -0.02 1.30 16 14 C -0.15 -1.97 5.78 -26.61 -0.15 -2.12 16 15 C 0.17 2.81 3.10 -67.89 -0.21 2.60 16 16 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 17 N -0.72 -15.46 4.31 -53.38 -0.23 -15.69 16 18 C -0.24 -6.02 9.93 -15.06 -0.15 -6.17 16 19 H 0.07 1.69 7.83 -52.49 -0.41 1.28 16 20 C -0.01 -0.25 5.50 -17.43 -0.10 -0.35 16 21 N -0.93 -26.13 13.06 55.49 0.72 -25.40 16 22 Si 0.91 20.90 29.55 -169.99 -5.02 15.88 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 26 C -0.13 -1.87 5.07 -26.61 -0.13 -2.01 16 27 C 0.15 2.15 3.19 -67.60 -0.22 1.93 16 28 H 0.09 1.46 6.65 -51.93 -0.35 1.12 16 29 C -0.14 -1.95 7.61 37.15 0.28 -1.67 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.58 6.85 -51.93 -0.36 0.22 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.14 0.76 6.91 -51.93 -0.36 0.41 16 38 H 0.14 1.10 7.71 -51.93 -0.40 0.70 16 39 H 0.07 0.57 5.93 -51.93 -0.31 0.26 16 40 H 0.09 1.47 7.74 -51.93 -0.40 1.07 16 41 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.38 8.90 6.07 -40.82 -0.25 8.65 16 44 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 45 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.07 1.22 6.54 -51.93 -0.34 0.88 16 48 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.06 0.84 6.96 -51.93 -0.36 0.48 16 LS Contribution 387.26 15.07 5.84 5.84 Total: -1.00 -31.93 387.26 -6.46 -38.39 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -7.73 Total: 5.95 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -1.46 Total: 0.23 kcal Atomic # 7 Polarization: -59.83 SS G_CDS: 1.85 Total: -57.98 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.07 Total: -8.30 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.93 -6.46 -38.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044778564.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.193 kcal (2) G-P(sol) polarization free energy of solvation -31.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds