Wall clock time and date at job start Tue Mar 31 2020 21:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46566 * 2 1 4 4 C 1.50698 * 109.47116 * 120.00135 * 2 1 3 5 5 N 1.31064 * 126.66535 * 300.03977 * 4 2 1 6 6 N 1.28834 * 107.99477 * 179.97438 * 5 4 2 7 7 N 1.28745 * 109.39520 * 359.73849 * 6 5 4 8 8 N 1.29013 * 108.80430 * 0.43438 * 7 6 5 9 9 C 1.46504 * 126.43149 * 179.83530 * 8 7 6 10 10 C 1.50703 * 109.47301 * 269.68650 * 9 8 7 11 11 O 1.21287 * 119.99910 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00086 * 180.02562 * 10 9 8 13 13 C 1.46932 * 120.63347 * 354.21637 * 12 10 9 14 14 C 1.53196 * 108.77427 * 126.36579 * 13 12 10 15 15 C 1.53044 * 109.31025 * 54.63992 * 14 13 12 16 16 H 1.09000 * 109.45924 * 178.62450 * 15 14 13 17 17 N 1.46497 * 109.46187 * 58.65146 * 15 14 13 18 18 C 1.36938 * 120.00093 * 84.99850 * 17 15 14 19 19 H 1.08000 * 119.99728 * 0.02562 * 18 17 15 20 20 C 1.38811 * 120.00262 * 180.02562 * 18 17 15 21 21 N 1.31625 * 120.00021 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99991 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47329 * 89.99616 * 22 20 18 24 24 H 1.48505 * 109.47131 * 209.99574 * 22 20 18 25 25 H 1.48502 * 109.47277 * 329.99562 * 22 20 18 26 26 C 1.53043 * 109.53716 * 298.63342 * 15 14 13 27 27 C 1.46930 * 120.62867 * 174.19368 * 12 10 9 28 28 H 1.09005 * 109.58147 * 113.70482 * 27 12 10 29 29 C 1.52994 * 109.58761 * 353.42114 * 27 12 10 30 30 H 1.08996 * 109.47789 * 59.99834 * 1 2 3 31 31 H 1.09008 * 109.47086 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47044 * 299.99423 * 1 2 3 33 33 H 1.09001 * 109.46734 * 240.00187 * 2 1 3 34 34 H 1.09006 * 109.46480 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47521 * 300.00151 * 3 2 1 36 36 H 1.09001 * 109.47441 * 60.00620 * 3 2 1 37 37 H 1.09003 * 109.47005 * 149.69371 * 9 8 7 38 38 H 1.08997 * 109.47292 * 29.69194 * 9 8 7 39 39 H 1.09003 * 109.58069 * 6.58374 * 13 12 10 40 40 H 1.08993 * 109.58481 * 246.15629 * 13 12 10 41 41 H 1.09000 * 109.49609 * 294.68744 * 14 13 12 42 42 H 1.08999 * 109.52008 * 174.60229 * 14 13 12 43 43 H 0.97006 * 120.00298 * 264.99940 * 17 15 14 44 44 H 0.96999 * 119.99750 * 179.97438 * 21 20 18 45 45 H 1.09005 * 109.49209 * 181.31997 * 26 15 14 46 46 H 1.09006 * 109.49241 * 301.41362 * 26 15 14 47 47 H 1.08993 * 109.47382 * 65.78413 * 29 27 12 48 48 H 1.08999 * 109.47237 * 185.78701 * 29 27 12 49 49 H 1.09000 * 109.47104 * 305.78413 * 29 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7971 -0.3789 2.4764 6 7 2.3981 -1.2294 3.2349 7 7 3.0063 -2.0982 2.5049 8 7 2.8094 -1.8089 1.2631 9 6 3.3289 -2.5422 0.1060 10 6 4.6670 -1.9730 -0.2900 11 8 5.1403 -1.0464 0.3333 12 7 5.3376 -2.4936 -1.3367 13 6 4.8400 -3.6941 -2.0224 14 6 4.7263 -3.3947 -3.5205 15 6 6.0740 -2.8878 -4.0391 16 1 6.0026 -2.6972 -5.1099 17 7 7.1042 -3.8994 -3.7910 18 6 7.2919 -4.9192 -4.6855 19 1 6.6807 -4.9773 -5.5740 20 6 8.2676 -5.8780 -4.4503 21 7 9.0128 -5.8068 -3.3676 22 14 8.5241 -7.2686 -5.6708 23 1 9.5257 -6.8569 -6.6870 24 1 9.0134 -8.4732 -4.9532 25 1 7.2371 -7.5813 -6.3426 26 6 6.4468 -1.5923 -3.3145 27 6 6.5800 -1.8711 -1.8141 28 1 7.4176 -2.5462 -1.6387 29 6 6.8152 -0.5569 -1.0670 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6765 1.9564 -0.8899 36 1 1.6766 1.9564 0.8900 37 1 2.6326 -2.4466 -0.7271 38 1 3.4439 -3.5947 0.3646 39 1 3.8596 -3.9604 -1.6275 40 1 5.5355 -4.5186 -1.8663 41 1 3.9642 -2.6324 -3.6823 42 1 4.4501 -4.3043 -4.0537 43 1 7.6534 -3.8470 -2.9931 44 1 9.6944 -6.4771 -3.2031 45 1 7.3954 -1.2194 -3.7010 46 1 5.6684 -0.8470 -3.4784 47 1 6.9993 -0.7659 -0.0133 48 1 7.6793 -0.0467 -1.4926 49 1 5.9346 0.0783 -1.1630 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044778564.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:16:02 Heat of formation + Delta-G solvation = 83.731310 kcal Electronic energy + Delta-G solvation = -30849.558527 eV Core-core repulsion = 26849.435590 eV Total energy + Delta-G solvation = -4000.122937 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -45.28767 -41.74181 -39.05091 -37.16527 -36.52159 -35.92423 -34.13359 -33.63304 -32.47787 -30.94695 -29.95020 -28.29484 -28.08809 -25.78403 -25.46663 -25.28810 -24.60678 -23.10965 -21.85558 -21.31247 -19.93095 -19.17810 -18.80871 -18.42564 -17.42808 -17.22464 -16.73794 -16.49849 -16.24086 -15.72859 -15.57354 -15.42922 -15.03458 -14.82935 -14.70722 -14.37771 -14.25449 -14.17266 -13.77028 -13.48375 -13.37625 -13.16463 -13.06760 -12.96928 -12.84416 -12.68167 -12.66594 -12.48401 -12.31763 -12.27629 -12.25856 -12.10382 -11.97580 -11.94629 -11.87311 -11.59616 -11.37578 -11.08401 -10.87896 -10.26301 -9.62449 -8.93446 -7.89157 -5.15804 0.11339 0.82759 1.14440 1.31797 1.50466 1.51730 1.59027 1.86487 2.60330 2.89207 3.12084 3.15338 3.45725 3.58380 3.80904 3.87333 3.91419 4.02516 4.04185 4.07724 4.08743 4.20047 4.28601 4.36203 4.39499 4.49957 4.64888 4.66345 4.76606 4.80169 4.80369 4.86156 4.91134 4.92543 4.96178 5.07272 5.12510 5.17810 5.23602 5.28839 5.31315 5.37476 5.38912 5.41550 5.61147 5.69122 6.32111 6.33240 6.92604 7.40457 7.49926 8.18077 8.38684 9.34110 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.019474 B = 0.002872 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.457369 B = 9747.111375 C = 9876.661895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.011 4.011 3 C -0.140 4.140 4 C 0.211 3.789 5 N -0.328 5.328 6 N -0.107 5.107 7 N -0.108 5.108 8 N -0.289 5.289 9 C 0.085 3.915 10 C 0.501 3.499 11 O -0.558 6.558 12 N -0.584 5.584 13 C 0.110 3.890 14 C -0.140 4.140 15 C 0.162 3.838 16 H 0.050 0.950 17 N -0.733 5.733 18 C -0.225 4.225 19 H 0.080 0.920 20 C -0.076 4.076 21 N -0.971 5.971 22 Si 0.962 3.038 23 H -0.295 1.295 24 H -0.304 1.304 25 H -0.265 1.265 26 C -0.120 4.120 27 C 0.150 3.850 28 H 0.048 0.952 29 C -0.122 4.122 30 H 0.100 0.900 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.120 0.880 34 H 0.040 0.960 35 H 0.101 0.899 36 H 0.056 0.944 37 H 0.189 0.811 38 H 0.162 0.838 39 H 0.118 0.882 40 H 0.053 0.947 41 H 0.092 0.908 42 H 0.070 0.930 43 H 0.371 0.629 44 H 0.246 0.754 45 H 0.065 0.935 46 H 0.092 0.908 47 H 0.050 0.950 48 H 0.052 0.948 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.086 11.005 -0.332 22.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.033 4.033 3 C -0.199 4.199 4 C -0.067 4.067 5 N -0.177 5.177 6 N -0.101 5.101 7 N -0.094 5.094 8 N -0.090 5.090 9 C -0.039 4.039 10 C 0.287 3.713 11 O -0.438 6.438 12 N -0.316 5.316 13 C -0.012 4.012 14 C -0.180 4.180 15 C 0.054 3.946 16 H 0.068 0.932 17 N -0.375 5.375 18 C -0.357 4.357 19 H 0.097 0.903 20 C -0.268 4.268 21 N -0.622 5.622 22 Si 0.793 3.207 23 H -0.223 1.223 24 H -0.232 1.232 25 H -0.190 1.190 26 C -0.159 4.159 27 C 0.047 3.953 28 H 0.066 0.934 29 C -0.179 4.179 30 H 0.119 0.881 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.138 0.862 34 H 0.059 0.941 35 H 0.120 0.880 36 H 0.075 0.925 37 H 0.206 0.794 38 H 0.179 0.821 39 H 0.136 0.864 40 H 0.072 0.928 41 H 0.111 0.889 42 H 0.088 0.912 43 H 0.204 0.796 44 H 0.055 0.945 45 H 0.084 0.916 46 H 0.110 0.890 47 H 0.069 0.931 48 H 0.070 0.930 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.740 11.197 1.256 21.866 hybrid contribution 1.504 -1.256 -0.835 2.130 sum -17.236 9.941 0.422 19.902 Atomic orbital electron populations 1.21854 0.90392 1.03281 1.04214 1.20128 0.98433 0.96101 0.88635 1.21810 1.00477 0.93465 1.04115 1.26801 0.93500 0.88120 0.98314 1.74841 1.21630 1.21522 0.99742 1.78554 1.08103 0.99790 1.23636 1.78816 1.19544 1.22291 0.88705 1.48090 1.33277 1.21002 1.06617 1.22575 0.95820 0.99011 0.86502 1.20616 0.86826 0.83441 0.80381 1.90854 1.68667 1.30800 1.53444 1.48099 1.24342 1.28716 1.30454 1.21911 1.00483 0.85386 0.93407 1.22387 0.98715 1.02442 0.94498 1.20507 0.88810 0.87823 0.97447 0.93199 1.42721 1.40672 1.28244 1.25822 1.19598 1.13000 1.01677 1.01429 0.90252 1.25411 0.99713 1.02157 0.99481 1.69804 1.25737 1.37813 1.28890 0.85299 0.77984 0.79120 0.78309 1.22312 1.23153 1.19016 1.22128 1.02737 0.98062 0.92959 1.21124 0.85140 0.94503 0.94553 0.93396 1.22014 1.01176 0.95308 0.99408 0.88101 0.91785 0.92545 0.86226 0.94110 0.87998 0.92476 0.79390 0.82098 0.86378 0.92804 0.88942 0.91184 0.79561 0.94479 0.91646 0.88954 0.93121 0.92958 0.91764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 9.18 71.98 0.66 -0.56 16 2 C -0.01 -0.14 3.26 -11.54 -0.04 -0.18 16 3 C -0.14 -1.92 9.18 71.98 0.66 -1.26 16 4 C 0.21 4.60 6.64 138.14 0.92 5.52 16 5 N -0.33 -9.52 12.36 -50.46 -0.62 -10.14 16 6 N -0.11 -3.55 13.43 37.01 0.50 -3.05 16 7 N -0.11 -3.27 13.29 37.02 0.49 -2.77 16 8 N -0.29 -6.58 2.83 -341.98 -0.97 -7.55 16 9 C 0.08 1.25 4.92 85.63 0.42 1.67 16 10 C 0.50 11.49 7.57 87.66 0.66 12.16 16 11 O -0.56 -17.32 12.00 -3.05 -0.04 -17.36 16 12 N -0.58 -13.75 2.97 -795.01 -2.36 -16.11 16 13 C 0.11 2.34 6.09 86.36 0.53 2.87 16 14 C -0.14 -3.11 5.78 30.67 0.18 -2.93 16 15 C 0.16 4.93 3.10 45.02 0.14 5.07 16 16 H 0.05 1.56 8.08 -2.39 -0.02 1.54 16 17 N -0.73 -31.28 4.31 -322.81 -1.39 -32.67 16 18 C -0.22 -11.00 9.93 84.03 0.83 -10.16 16 19 H 0.08 3.68 7.83 -2.91 -0.02 3.65 16 20 C -0.08 -4.01 5.50 84.86 0.47 -3.55 16 21 N -0.97 -56.28 13.06 21.65 0.28 -56.00 16 22 Si 0.96 43.32 29.55 68.60 2.03 45.35 16 23 H -0.30 -13.39 7.11 99.48 0.71 -12.69 16 24 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 25 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 26 C -0.12 -3.15 5.07 30.67 0.16 -2.99 16 27 C 0.15 4.28 3.19 44.97 0.14 4.43 16 28 H 0.05 1.73 6.65 -2.38 -0.02 1.72 16 29 C -0.12 -3.43 7.61 71.98 0.55 -2.88 16 30 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.06 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.06 0.69 8.14 -2.38 -0.02 0.67 16 33 H 0.12 0.80 6.85 -2.39 -0.02 0.78 16 34 H 0.04 0.74 8.14 -2.38 -0.02 0.73 16 35 H 0.10 0.78 8.14 -2.39 -0.02 0.77 16 36 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.19 0.79 6.91 -2.39 -0.02 0.77 16 38 H 0.16 1.81 7.71 -2.39 -0.02 1.79 16 39 H 0.12 1.32 5.93 -2.39 -0.01 1.31 16 40 H 0.05 1.63 7.74 -2.39 -0.02 1.61 16 41 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.37 17.74 6.07 -92.70 -0.56 17.17 16 44 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 45 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 46 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 47 H 0.05 1.68 6.54 -2.39 -0.02 1.67 16 48 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 49 H 0.06 1.74 6.96 -2.39 -0.02 1.72 16 Total: -1.00 -75.02 387.26 4.59 -70.43 By element: Atomic # 1 Polarization: 22.25 SS G_CDS: 0.40 Total: 22.65 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 6.28 Total: 7.21 kcal Atomic # 7 Polarization: -124.21 SS G_CDS: -4.07 Total: -128.29 kcal Atomic # 8 Polarization: -17.32 SS G_CDS: -0.04 Total: -17.36 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Total: -75.02 4.59 -70.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044778564.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.160 kcal (2) G-P(sol) polarization free energy of solvation -75.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds